Wall clock time and date at job start Mon Mar 30 2020 00:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 120.00262 * 2 1 4 4 H 1.48499 * 109.46897 * 273.80048 * 3 2 1 5 5 H 1.48497 * 109.46950 * 33.79823 * 3 2 1 6 6 H 1.48496 * 109.47098 * 153.79552 * 3 2 1 7 7 C 1.38955 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99876 * 341.97781 * 7 2 1 9 9 N 1.37097 * 119.99962 * 161.97436 * 7 2 1 10 10 C 1.34773 * 119.99876 * 320.10421 * 9 7 2 11 11 O 1.21293 * 120.00342 * 0.02562 * 10 9 7 12 12 C 1.50709 * 119.99944 * 179.72368 * 10 9 7 13 13 C 1.53001 * 109.47218 * 180.02562 * 12 10 9 14 14 C 1.50695 * 109.47106 * 180.02562 * 13 12 10 15 15 N 1.31799 * 119.12276 * 269.72962 * 14 13 12 16 16 C 1.32330 * 120.81601 * 179.75837 * 15 14 13 17 17 C 1.38599 * 119.10740 * 0.50891 * 16 15 14 18 18 C 1.38606 * 118.39535 * 359.74661 * 17 16 15 19 19 N 1.31790 * 119.12153 * 90.00002 * 14 13 12 20 20 C 1.46500 * 119.99940 * 140.10640 * 9 7 2 21 21 C 1.53002 * 117.49950 * 2.28904 * 20 9 7 22 22 C 1.52999 * 59.99991 * 252.51017 * 21 20 9 23 23 H 0.96999 * 119.99876 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47006 * 300.00453 * 12 10 9 25 25 H 1.08996 * 109.46678 * 60.00455 * 12 10 9 26 26 H 1.08998 * 109.46876 * 300.00582 * 13 12 10 27 27 H 1.09008 * 109.46954 * 60.00193 * 13 12 10 28 28 H 1.08001 * 120.44964 * 180.23348 * 16 15 14 29 29 H 1.07995 * 120.80499 * 179.76762 * 17 16 15 30 30 H 1.08005 * 120.44327 * 180.02562 * 18 17 16 31 31 H 1.09004 * 115.54618 * 147.99378 * 20 9 7 32 32 H 1.09003 * 117.49487 * 359.97438 * 21 20 9 33 33 H 1.08997 * 117.49623 * 145.01553 * 21 20 9 34 34 H 1.09006 * 117.49903 * 252.51277 * 22 21 20 35 35 H 1.08998 * 117.51651 * 107.47935 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4153 2.0927 -1.3970 5 1 1.4882 2.6281 0.7788 6 1 3.5835 1.4182 0.6182 7 6 2.0089 -1.2034 0.0005 8 1 1.5086 -2.1156 0.2903 9 7 3.3294 -1.2327 -0.3668 10 6 3.7588 -0.4788 -1.3982 11 8 2.9771 0.2259 -2.0011 12 6 5.2116 -0.5063 -1.7981 13 6 5.4312 0.4318 -2.9867 14 6 6.8838 0.4039 -3.3869 15 7 7.7175 1.2634 -2.8363 16 6 9.0007 1.2653 -3.1596 17 6 9.4610 0.3548 -4.0978 18 6 8.5531 -0.5297 -4.6586 19 7 7.2855 -0.4759 -4.2822 20 6 4.2737 -2.0835 0.3616 21 6 3.7151 -2.9558 1.4877 22 6 4.5645 -1.7277 1.8210 23 1 -0.4850 0.8400 -0.0004 24 1 5.8256 -0.1791 -0.9591 25 1 5.4918 -1.5214 -2.0794 26 1 4.8171 0.1050 -3.8258 27 1 5.1510 1.4469 -2.7050 28 1 9.6794 1.9698 -2.7020 29 1 10.5019 0.3348 -4.3847 30 1 8.8759 -1.2533 -5.3925 31 1 5.0938 -2.4897 -0.2305 32 1 2.6450 -2.8963 1.6867 33 1 4.1676 -3.9362 1.6365 34 1 5.5759 -1.9001 2.1891 35 1 4.0535 -0.8604 2.2389 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584694354.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:12:04 Heat of formation + Delta-G solvation = 31.661696 kcal Electronic energy + Delta-G solvation = -19325.085384 eV Core-core repulsion = 16323.981845 eV Total energy + Delta-G solvation = -3001.103539 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.00615 -40.97682 -38.16067 -35.45467 -34.74834 -34.67514 -33.44264 -31.80983 -27.99666 -25.79124 -25.44098 -23.62099 -23.09738 -22.73625 -20.95632 -19.06191 -18.54636 -18.10126 -17.58999 -17.27641 -16.36884 -16.21819 -15.97199 -15.60987 -15.22973 -15.00742 -14.68607 -14.47947 -14.13404 -13.91959 -13.50563 -13.19708 -12.85272 -12.48207 -12.20702 -12.15928 -11.99188 -11.85348 -11.74953 -11.60207 -11.22965 -10.71621 -10.53711 -10.32942 -10.19237 -9.42617 -8.41708 -6.16395 -0.08119 0.20301 1.19486 1.33414 1.51789 1.89544 2.43895 2.50393 2.81098 2.93917 2.98108 3.21731 3.27490 3.79434 3.80083 4.00767 4.07313 4.12096 4.18287 4.23310 4.26091 4.31415 4.49988 4.59558 4.76855 4.86607 4.97549 5.01323 5.03034 5.22418 5.44102 5.48542 5.69327 5.83153 6.10998 6.72387 6.87478 7.15214 7.32998 7.83716 8.65293 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.024104 B = 0.006043 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.368820 B = 4632.307309 C = 5173.963863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.040 3.960 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.314 1.314 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.074 0.926 9 N -0.450 5.450 10 C 0.442 3.558 11 O -0.585 6.585 12 C -0.102 4.102 13 C -0.033 4.033 14 C 0.311 3.689 15 N -0.546 5.546 16 C 0.135 3.865 17 C -0.215 4.215 18 C 0.136 3.864 19 N -0.541 5.541 20 C 0.040 3.960 21 C -0.166 4.166 22 C -0.185 4.185 23 H 0.272 0.728 24 H 0.097 0.903 25 H 0.109 0.891 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.200 0.800 29 H 0.192 0.808 30 H 0.202 0.798 31 H 0.149 0.851 32 H 0.076 0.924 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.243 -2.406 -4.377 24.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.163 4.163 3 Si 0.801 3.199 4 H -0.198 1.198 5 H -0.245 1.245 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.092 0.908 9 N -0.170 5.170 10 C 0.234 3.766 11 O -0.471 6.471 12 C -0.143 4.143 13 C -0.072 4.072 14 C 0.044 3.956 15 N -0.261 5.261 16 C -0.030 4.030 17 C -0.236 4.236 18 C -0.029 4.029 19 N -0.255 5.255 20 C -0.064 4.064 21 C -0.203 4.203 22 C -0.223 4.223 23 H 0.081 0.919 24 H 0.115 0.885 25 H 0.127 0.873 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.217 0.783 29 H 0.209 0.791 30 H 0.219 0.781 31 H 0.166 0.834 32 H 0.095 0.905 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 22.738 -1.989 -4.406 23.246 hybrid contribution 0.219 0.875 -0.135 0.912 sum 22.957 -1.114 -4.541 23.428 Atomic orbital electron populations 1.69814 1.07949 1.28596 1.48639 1.25944 0.95495 1.02138 0.92755 0.85415 0.78264 0.79389 0.76810 1.19812 1.24469 1.19554 1.18711 0.85071 0.94659 1.48067 0.90828 1.43332 1.07220 1.39820 1.26632 1.21106 0.91568 0.83192 0.80709 1.90480 1.57954 1.43180 1.55503 1.21339 0.92167 1.02120 0.98689 1.19940 0.88071 1.00756 0.98464 1.22782 0.96337 0.87407 0.89107 1.68270 1.05912 1.24369 1.27545 1.23951 0.90937 0.95879 0.92207 1.23352 1.04439 0.97097 0.98705 1.23982 0.87175 0.96082 0.95617 1.68268 1.20128 1.23094 1.14039 1.22233 0.96076 0.99219 0.88843 1.23160 1.00094 0.96000 1.01047 1.23316 1.01897 0.99059 0.98048 0.91902 0.88488 0.87282 0.89833 0.90964 0.78341 0.79096 0.78110 0.83374 0.90533 0.85178 0.85055 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.02 13.96 21.66 0.30 -58.71 16 2 C 0.04 2.50 4.90 84.93 0.42 2.92 16 3 Si 0.97 53.85 24.53 68.60 1.68 55.54 16 4 H -0.27 -15.87 6.10 99.48 0.61 -15.26 16 5 H -0.31 -17.03 7.11 99.48 0.71 -16.32 16 6 H -0.27 -14.14 7.11 99.48 0.71 -13.44 16 7 C -0.34 -19.72 8.77 84.04 0.74 -18.98 16 8 H 0.07 4.53 6.96 -2.91 -0.02 4.51 16 9 N -0.45 -21.87 2.56 -613.11 -1.57 -23.44 16 10 C 0.44 21.34 5.87 87.66 0.51 21.86 16 11 O -0.58 -33.44 10.83 -3.07 -0.03 -33.47 16 12 C -0.10 -3.67 4.32 29.85 0.13 -3.54 16 13 C -0.03 -1.17 4.94 29.85 0.15 -1.02 16 14 C 0.31 9.41 6.90 138.75 0.96 10.36 16 15 N -0.55 -15.03 10.33 -187.85 -1.94 -16.97 16 16 C 0.13 2.33 11.30 84.70 0.96 3.29 16 17 C -0.21 -2.62 10.17 22.44 0.23 -2.39 16 18 C 0.14 2.27 11.31 84.71 0.96 3.23 16 19 N -0.54 -14.42 10.33 -187.84 -1.94 -16.36 16 20 C 0.04 1.45 5.85 44.99 0.26 1.71 16 21 C -0.17 -5.42 9.80 30.59 0.30 -5.12 16 22 C -0.18 -5.91 10.37 30.59 0.32 -5.59 16 23 H 0.27 16.69 8.31 -92.71 -0.77 15.92 16 24 H 0.10 3.21 8.11 -2.39 -0.02 3.19 16 25 H 0.11 3.36 7.56 -2.39 -0.02 3.34 16 26 H 0.08 3.18 8.10 -2.39 -0.02 3.16 16 27 H 0.07 2.86 8.10 -2.38 -0.02 2.84 16 28 H 0.20 1.87 8.06 -2.91 -0.02 1.85 16 29 H 0.19 0.54 8.06 -2.91 -0.02 0.52 16 30 H 0.20 1.72 8.06 -2.91 -0.02 1.70 16 31 H 0.15 4.15 6.99 -2.38 -0.02 4.13 16 32 H 0.08 3.07 6.49 -2.39 -0.02 3.06 16 33 H 0.13 3.13 8.14 -2.39 -0.02 3.11 16 34 H 0.13 3.04 8.14 -2.38 -0.02 3.02 16 35 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -82.25 296.57 3.42 -78.83 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 0.99 Total: 7.87 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 5.92 Total: 6.72 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -5.15 Total: -115.48 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -0.03 Total: -33.47 kcal Atomic # 14 Polarization: 53.85 SS G_CDS: 1.68 Total: 55.54 kcal Total: -82.25 3.42 -78.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584694354.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.496 kcal (2) G-P(sol) polarization free energy of solvation -82.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds