Wall clock time and date at job start Sun Mar 29 2020 23:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47080 * 2 1 4 4 C 1.37101 * 120.00587 * 94.60896 * 3 2 1 5 5 H 1.07995 * 119.99772 * 217.77886 * 4 3 2 6 6 C 1.38954 * 119.99583 * 37.77204 * 4 3 2 7 7 N 1.31408 * 120.00152 * 19.68823 * 6 4 3 8 8 Si 1.86798 * 119.99468 * 199.68460 * 6 4 3 9 9 H 1.48502 * 109.47332 * 60.00449 * 8 6 4 10 10 H 1.48497 * 109.46913 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47564 * 300.00241 * 8 6 4 12 12 C 1.34783 * 119.99712 * 274.33122 * 3 2 1 13 13 O 1.21292 * 119.99953 * 180.27795 * 12 3 2 14 14 C 1.50704 * 119.99658 * 0.27428 * 12 3 2 15 15 C 1.50702 * 109.46885 * 179.97438 * 14 12 3 16 16 C 1.38257 * 119.99908 * 89.99820 * 15 14 12 17 17 C 1.38210 * 119.99871 * 179.97438 * 16 15 14 18 18 C 1.38256 * 120.00100 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99837 * 180.02562 * 18 17 16 20 20 C 1.38207 * 120.00055 * 359.97438 * 18 17 16 21 21 C 1.50699 * 119.99946 * 180.02562 * 20 18 17 22 22 C 1.38207 * 120.00020 * 269.72924 * 15 14 12 23 23 H 1.08998 * 109.47252 * 60.00681 * 1 2 3 24 24 H 1.09005 * 109.46948 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47259 * 300.00190 * 1 2 3 26 26 H 1.08999 * 109.47089 * 239.99284 * 2 1 3 27 27 H 1.09005 * 109.46947 * 119.99597 * 2 1 3 28 28 H 0.97000 * 120.00028 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47093 * 299.99888 * 14 12 3 30 30 H 1.08991 * 109.47182 * 60.00334 * 14 12 3 31 31 H 1.07999 * 119.99868 * 0.02562 * 16 15 14 32 32 H 1.08000 * 119.99944 * 180.02562 * 17 16 15 33 33 H 1.08995 * 109.47382 * 89.99863 * 19 18 17 34 34 H 1.09007 * 109.46907 * 209.99942 * 19 18 17 35 35 H 1.08996 * 109.47416 * 329.99236 * 19 18 17 36 36 H 1.09000 * 109.47683 * 89.99929 * 21 20 18 37 37 H 1.09004 * 109.47229 * 209.99642 * 21 20 18 38 38 H 1.09000 * 109.47413 * 329.99493 * 21 20 18 39 39 H 1.08001 * 120.00137 * 359.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3368 1.9958 1.1834 5 1 2.1091 3.0417 1.3270 6 6 2.9523 1.2729 2.1980 7 7 3.5737 0.1489 1.9200 8 14 2.8965 1.8992 3.9570 9 1 1.4831 2.0065 4.3997 10 1 3.6226 0.9535 4.8423 11 1 3.5401 3.2356 4.0274 12 6 2.1598 2.0459 -1.1640 13 8 2.5689 3.1877 -1.1644 14 6 1.8098 1.3703 -2.4648 15 6 2.0553 2.3221 -3.6071 16 6 3.2918 2.3566 -4.2246 17 6 3.5167 3.2292 -5.2726 18 6 2.5054 4.0679 -5.7030 19 6 2.7506 5.0189 -6.8461 20 6 1.2694 4.0334 -5.0858 21 6 0.1669 4.9472 -5.5554 22 6 1.0426 3.1566 -4.0411 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 4.0037 -0.3555 2.6282 29 1 2.4295 0.4826 -2.5914 30 1 0.7590 1.0811 -2.4528 31 1 4.0816 1.7011 -3.8886 32 1 4.4825 3.2558 -5.7552 33 1 2.4969 4.5298 -7.7865 34 1 2.1308 5.9066 -6.7195 35 1 3.8014 5.3083 -6.8589 36 1 -0.4111 4.4492 -6.3338 37 1 -0.4861 5.1895 -4.7169 38 1 0.6003 5.8640 -5.9550 39 1 0.0752 3.1263 -3.5618 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050164708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:20 Heat of formation + Delta-G solvation = -21.631044 kcal Electronic energy + Delta-G solvation = -19486.488151 eV Core-core repulsion = 16586.614008 eV Total energy + Delta-G solvation = -2899.874142 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.51990 -38.23035 -35.00135 -33.69968 -32.07849 -31.86806 -29.42723 -29.24193 -27.00917 -25.54793 -24.10609 -22.22144 -21.75820 -20.15398 -18.57351 -16.73432 -15.87051 -15.67270 -15.46909 -14.87699 -14.52796 -14.13494 -13.92959 -13.76846 -12.91315 -12.83526 -12.77429 -12.68530 -12.42260 -12.34636 -11.89715 -11.80138 -11.69055 -11.30985 -11.10401 -11.03122 -10.92498 -10.60243 -10.53750 -10.33597 -10.26718 -10.05725 -8.88846 -8.45957 -8.32836 -7.95951 -7.40178 -6.28260 -3.93544 1.72141 1.78235 3.21965 3.27157 3.31018 3.97647 4.04483 4.23381 4.94585 5.02095 5.03769 5.11450 5.23261 5.27295 5.40591 5.55673 5.59655 5.74244 5.79511 5.86021 5.87458 5.93342 5.96381 6.01050 6.06373 6.14087 6.25784 6.35585 6.48315 6.53083 6.56375 6.80498 6.90899 6.93904 7.08892 7.27890 7.41285 7.62604 8.32205 8.57343 9.25008 9.46055 10.08617 10.76096 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.030617 B = 0.004743 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.298761 B = 5902.491835 C = 6065.130163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.098 3.902 3 N -0.444 5.444 4 C -0.306 4.306 5 H 0.088 0.912 6 C 0.036 3.964 7 N -0.873 5.873 8 Si 0.918 3.082 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.464 3.536 13 O -0.573 6.573 14 C -0.102 4.102 15 C -0.043 4.043 16 C -0.108 4.108 17 C -0.117 4.117 18 C -0.102 4.102 19 C -0.111 4.111 20 C -0.090 4.090 21 C -0.113 4.113 22 C -0.105 4.105 23 H 0.041 0.959 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.109 0.891 28 H 0.267 0.733 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.101 1.171 -12.778 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.026 4.026 3 N -0.164 5.164 4 C -0.434 4.434 5 H 0.106 0.894 6 C -0.167 4.167 7 N -0.511 5.511 8 Si 0.744 3.256 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.252 3.748 13 O -0.456 6.456 14 C -0.143 4.143 15 C -0.044 4.044 16 C -0.126 4.126 17 C -0.135 4.135 18 C -0.102 4.102 19 C -0.168 4.168 20 C -0.090 4.090 21 C -0.169 4.169 22 C -0.123 4.123 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.126 0.874 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.787 1.592 -12.647 13.617 hybrid contribution 0.088 -0.023 1.037 1.041 sum -4.699 1.569 -11.610 12.623 Atomic orbital electron populations 1.22215 0.98326 1.00280 1.01458 1.21523 0.91617 0.85675 1.03767 1.43490 1.56376 1.11879 1.04653 1.19363 1.37559 0.96824 0.89624 0.89434 1.25363 0.94318 0.96577 1.00481 1.69904 1.31533 1.16380 1.33320 0.86143 0.78452 0.78800 0.82182 1.19943 1.20999 1.19793 1.20203 0.82160 0.87983 0.84457 1.90542 1.49439 1.18761 1.86817 1.20764 1.02823 0.97987 0.92685 1.19435 0.93649 0.96523 0.94750 1.20950 0.96409 0.99375 0.95898 1.20872 0.98343 0.96596 0.97684 1.19608 0.93659 0.98564 0.98401 1.20786 1.01978 0.97993 0.96021 1.19610 0.94827 0.97847 0.96741 1.20805 0.96640 0.98249 1.01242 1.20793 0.99004 0.95930 0.96579 0.93962 0.93134 0.92455 0.93424 0.87364 0.92279 0.89330 0.89618 0.86413 0.86587 0.91736 0.91519 0.92007 0.91637 0.91797 0.91494 0.86608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 10.16 37.16 0.38 -2.58 16 2 C 0.10 2.14 5.43 -4.04 -0.02 2.11 16 3 N -0.44 -11.37 2.53 -114.81 -0.29 -11.66 16 4 C -0.31 -8.60 8.90 -14.93 -0.13 -8.74 16 5 H 0.09 2.59 7.77 -52.49 -0.41 2.18 16 6 C 0.04 0.97 4.95 -17.47 -0.09 0.89 16 7 N -0.87 -23.73 11.44 55.50 0.63 -23.10 16 8 Si 0.92 20.86 29.60 -169.99 -5.03 15.83 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 C 0.46 11.59 7.60 -10.98 -0.08 11.50 16 13 O -0.57 -16.54 15.91 5.55 0.09 -16.45 16 14 C -0.10 -1.97 4.44 -29.03 -0.13 -2.09 16 15 C -0.04 -0.80 4.37 -104.63 -0.46 -1.26 16 16 C -0.11 -1.90 9.70 -39.58 -0.38 -2.29 16 17 C -0.12 -1.81 9.70 -39.59 -0.38 -2.20 16 18 C -0.10 -1.50 5.88 -104.63 -0.62 -2.11 16 19 C -0.11 -1.21 9.60 36.01 0.35 -0.87 16 20 C -0.09 -1.37 5.88 -104.63 -0.62 -1.99 16 21 C -0.11 -1.31 9.60 36.01 0.35 -0.97 16 22 C -0.10 -1.80 9.36 -39.58 -0.37 -2.17 16 23 H 0.04 0.70 6.69 -51.93 -0.35 0.36 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.05 0.94 6.62 -51.93 -0.34 0.59 16 27 H 0.11 2.60 5.53 -51.93 -0.29 2.31 16 28 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 29 H 0.09 1.57 7.34 -51.93 -0.38 1.19 16 30 H 0.09 1.45 6.56 -51.93 -0.34 1.11 16 31 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 32 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.66 5.95 -51.92 -0.31 0.35 16 35 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 38 H 0.07 0.69 5.95 -51.93 -0.31 0.38 16 39 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 320.01 15.07 4.82 4.82 Total: -1.00 -32.15 320.01 -7.65 -39.80 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.66 Total: 3.52 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -2.21 Total: -12.76 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.34 Total: -34.76 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.09 Total: -16.45 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.15 -7.65 -39.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050164708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.164 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds