Wall clock time and date at job start Mon Mar 30 2020 00:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99493 * 359.97438 * 4 3 2 6 6 C 1.38214 * 120.00052 * 0.02562 * 5 4 3 7 7 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 8 8 C 1.50695 * 119.99818 * 0.02562 * 7 2 1 9 9 H 1.08996 * 109.47270 * 39.99688 * 8 7 2 10 10 C 1.53004 * 109.47134 * 279.99404 * 8 7 2 11 11 N 1.46899 * 109.46843 * 159.99827 * 8 7 2 12 12 C 1.46906 * 110.99943 * 204.99449 * 11 8 7 13 13 C 1.52998 * 109.46997 * 179.97438 * 12 11 8 14 14 C 1.52996 * 109.47530 * 300.00119 * 13 12 11 15 15 C 1.53007 * 109.47223 * 60.00651 * 13 12 11 16 16 C 1.50694 * 109.46975 * 180.02562 * 13 12 11 17 17 H 1.08005 * 120.00194 * 0.02562 * 16 13 12 18 18 C 1.37880 * 120.00355 * 179.97438 * 16 13 12 19 19 N 1.31518 * 119.99707 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 120.00367 * 180.02562 * 18 16 13 21 21 H 1.48495 * 109.47347 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47169 * 120.00547 * 20 18 16 23 23 H 1.48504 * 109.47155 * 240.00383 * 20 18 16 24 24 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 27 27 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 28 28 H 1.07994 * 120.00533 * 180.02562 * 4 3 2 29 29 H 1.08001 * 119.99773 * 180.02562 * 5 4 3 30 30 H 1.08000 * 120.00080 * 180.02562 * 6 5 4 31 31 H 1.09001 * 109.47090 * 180.02562 * 10 8 7 32 32 H 1.08992 * 109.47398 * 300.00789 * 10 8 7 33 33 H 1.09003 * 109.46614 * 60.00553 * 10 8 7 34 34 H 1.00893 * 111.00185 * 328.95381 * 11 8 7 35 35 H 1.08997 * 109.47256 * 299.99978 * 12 11 8 36 36 H 1.09001 * 109.46488 * 60.00285 * 12 11 8 37 37 H 1.09005 * 109.46813 * 59.99900 * 14 13 12 38 38 H 1.08998 * 109.47517 * 179.97438 * 14 13 12 39 39 H 1.09001 * 109.47448 * 300.00535 * 14 13 12 40 40 H 1.08997 * 109.47227 * 59.99164 * 15 13 12 41 41 H 1.08999 * 109.47060 * 180.02562 * 15 13 12 42 42 H 1.09005 * 109.46710 * 299.99848 * 15 13 12 43 43 H 0.96997 * 119.99724 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5806 -1.1969 0.0016 7 6 2.1981 -1.1970 0.0058 8 6 1.4446 -2.5020 0.0116 9 1 0.5814 -2.4261 -0.6496 10 6 0.9722 -2.8119 1.4335 11 7 2.3270 -3.5790 -0.4568 12 6 1.5486 -4.6879 -1.0246 13 6 2.5000 -5.7874 -1.5010 14 6 3.4376 -5.2227 -2.5699 15 6 3.3244 -6.2968 -0.3169 16 6 1.7015 -6.9247 -2.0839 17 1 0.6233 -6.8687 -2.1123 18 6 2.3474 -8.0363 -2.5822 19 7 3.6604 -8.1043 -2.5481 20 14 1.3577 -9.4458 -3.3055 21 1 -0.0902 -9.1256 -3.2266 22 1 1.7437 -9.6441 -4.7257 23 1 1.6328 -10.6880 -2.5397 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 1.6583 2.1327 -0.0004 28 1 4.1204 2.1326 0.0010 29 1 5.3517 0.0001 0.0024 30 1 4.1206 -2.1322 0.0029 31 1 0.4276 -3.7561 1.4377 32 1 1.8353 -2.8877 2.0947 33 1 0.3174 -2.0128 1.7810 34 1 2.9999 -3.2310 -1.1233 35 1 0.8803 -5.0900 -0.2632 36 1 0.9617 -4.3251 -1.8684 37 1 4.0152 -4.3998 -2.1486 38 1 4.1157 -6.0059 -2.9090 39 1 2.8504 -4.8598 -3.4134 40 1 2.6564 -6.6991 0.4447 41 1 4.0025 -7.0798 -0.6564 42 1 3.9019 -5.4739 0.1044 43 1 4.1147 -8.8864 -2.8983 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414166607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:22 Heat of formation + Delta-G solvation = 11.715208 kcal Electronic energy + Delta-G solvation = -20013.597246 eV Core-core repulsion = 17251.002200 eV Total energy + Delta-G solvation = -2762.595046 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 261.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.73929 -37.00743 -34.80046 -32.85017 -31.59878 -29.94237 -28.57317 -26.93944 -25.54336 -25.20785 -24.21904 -22.99972 -21.19217 -19.95808 -18.41070 -16.66208 -15.90299 -15.60490 -15.10368 -14.62077 -14.46394 -14.03728 -13.75541 -13.39328 -13.04860 -12.73499 -12.65920 -12.32106 -12.23290 -11.98385 -11.73429 -11.64218 -11.36191 -11.12787 -11.02205 -10.83723 -10.67243 -10.55137 -10.33496 -10.12312 -10.03709 -9.36544 -9.06561 -8.69454 -8.59593 -8.47765 -8.27688 -7.70257 -5.89706 -3.99824 1.42403 1.48926 3.31254 3.39660 3.43147 3.83666 4.44493 4.70955 4.85258 4.92068 5.01796 5.17931 5.28678 5.35907 5.50183 5.56117 5.62807 5.71401 5.75625 5.79802 6.03865 6.11289 6.19892 6.23186 6.35395 6.41983 6.54761 6.56017 6.62875 6.74456 6.75386 6.92412 7.10171 7.11071 7.19501 7.40389 7.50234 7.76780 7.78116 7.85700 7.99582 8.23272 8.36640 8.57921 9.01792 9.65125 11.10845 Molecular weight = 261.18amu Principal moments of inertia in cm(-1) A = 0.033365 B = 0.004475 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.013385 B = 6256.067748 C = 6616.332013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.085 4.085 3 C -0.125 4.125 4 C -0.126 4.126 5 C -0.126 4.126 6 C -0.103 4.103 7 C -0.079 4.079 8 C 0.119 3.881 9 H 0.048 0.952 10 C -0.133 4.133 11 N -0.681 5.681 12 C 0.075 3.925 13 C 0.069 3.931 14 C -0.132 4.132 15 C -0.118 4.118 16 C -0.505 4.505 17 H 0.052 0.948 18 C 0.065 3.935 19 N -0.884 5.884 20 Si 0.888 3.112 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.285 1.285 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.136 0.864 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.339 0.661 35 H 0.057 0.943 36 H 0.012 0.988 37 H 0.010 0.990 38 H 0.083 0.917 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.073 0.927 42 H 0.020 0.980 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.219 16.065 5.381 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.144 4.144 5 C -0.144 4.144 6 C -0.122 4.122 7 C -0.079 4.079 8 C 0.009 3.991 9 H 0.065 0.935 10 C -0.190 4.190 11 N -0.315 5.315 12 C -0.053 4.053 13 C 0.068 3.932 14 C -0.190 4.190 15 C -0.176 4.176 16 C -0.544 4.544 17 H 0.070 0.930 18 C -0.136 4.136 19 N -0.523 5.523 20 Si 0.716 3.284 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.211 1.211 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.135 0.865 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.154 0.846 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.160 0.840 35 H 0.075 0.925 36 H 0.031 0.969 37 H 0.029 0.971 38 H 0.102 0.898 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.092 0.908 42 H 0.039 0.961 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.029 15.636 5.943 16.850 hybrid contribution -0.774 -0.369 -1.315 1.570 sum -2.803 15.267 4.628 16.198 Atomic orbital electron populations 1.20917 0.91569 1.02921 1.02347 1.19737 0.95902 0.92637 1.00246 1.20932 0.94270 0.97118 1.01975 1.21072 0.94273 0.97902 1.01164 1.21154 0.99806 0.92545 1.00928 1.21203 0.93833 0.98676 0.98447 1.19972 0.94009 0.94295 0.99629 1.20415 0.94004 0.87591 0.97066 0.93472 1.21772 1.00961 1.00830 0.95483 1.60783 1.17372 1.08687 1.44662 1.22198 0.96044 0.91382 0.95659 1.18094 0.91923 0.90833 0.92358 1.21834 1.00014 0.98957 0.98177 1.21629 0.99545 0.99761 0.96632 1.21147 0.92734 1.01548 1.38949 0.92992 1.24885 0.94826 0.98035 0.95844 1.69847 1.06930 1.28952 1.46614 0.86612 0.80405 0.82615 0.78770 1.19973 1.21198 1.21120 0.91329 0.91830 0.90794 0.86528 0.86552 0.86263 0.84622 0.92193 0.92040 0.93055 0.84000 0.92465 0.96941 0.97146 0.89817 0.96257 0.96325 0.90806 0.96140 0.93284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.25 36.01 0.33 -0.94 16 2 C -0.08 -1.07 5.88 -104.62 -0.61 -1.68 16 3 C -0.12 -1.43 9.70 -39.58 -0.38 -1.82 16 4 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 5 C -0.13 -1.55 10.05 -39.58 -0.40 -1.95 16 6 C -0.10 -1.46 8.87 -39.58 -0.35 -1.81 16 7 C -0.08 -1.12 4.99 -104.63 -0.52 -1.64 16 8 C 0.12 1.82 2.15 -68.87 -0.15 1.67 16 9 H 0.05 0.74 6.94 -51.93 -0.36 0.38 16 10 C -0.13 -1.88 9.15 37.16 0.34 -1.54 16 11 N -0.68 -12.19 4.82 -107.95 -0.52 -12.71 16 12 C 0.08 1.58 4.38 -3.82 -0.02 1.56 16 13 C 0.07 1.66 0.57 -155.66 -0.09 1.57 16 14 C -0.13 -3.14 7.92 37.16 0.29 -2.84 16 15 C -0.12 -2.87 8.09 37.16 0.30 -2.57 16 16 C -0.50 -13.62 8.01 -34.44 -0.28 -13.89 16 17 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 18 C 0.06 1.76 5.15 -17.82 -0.09 1.67 16 19 N -0.88 -24.52 9.35 55.43 0.52 -24.01 16 20 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 26 H 0.07 0.78 5.00 -51.93 -0.26 0.52 16 27 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 28 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.14 1.99 6.69 -52.49 -0.35 1.64 16 31 H 0.06 0.89 7.45 -51.93 -0.39 0.50 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.62 6.39 -51.93 -0.33 0.29 16 34 H 0.34 6.12 5.00 -39.30 -0.20 5.92 16 35 H 0.06 1.22 7.43 -51.93 -0.39 0.83 16 36 H 0.01 0.26 8.06 -51.93 -0.42 -0.15 16 37 H 0.01 0.21 6.57 -51.93 -0.34 -0.13 16 38 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.07 1.97 6.07 -51.93 -0.32 1.66 16 42 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 43 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 329.40 15.07 4.96 4.96 Total: -1.00 -27.59 329.40 -9.06 -36.65 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.98 Total: 5.00 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: -2.02 Total: -26.03 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.00 Total: -36.72 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.59 -9.06 -36.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414166607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.361 kcal (2) G-P(sol) polarization free energy of solvation -27.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds