Wall clock time and date at job start Mon Mar 30 2020 00:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46904 * 109.46661 * 119.99547 * 2 1 3 13 13 C 1.46901 * 110.99540 * 176.04541 * 12 2 1 14 14 C 1.46895 * 111.00014 * 299.99855 * 12 2 1 15 15 C 1.53009 * 109.47118 * 170.00092 * 14 12 2 16 16 C 1.52993 * 109.47136 * 180.02562 * 15 14 12 17 17 H 1.09010 * 110.01927 * 306.39121 * 16 15 14 18 18 C 1.54266 * 110.03366 * 184.99999 * 16 15 14 19 19 C 1.54891 * 104.19819 * 217.10365 * 18 16 15 20 20 C 1.54886 * 102.74791 * 37.93934 * 19 18 16 21 21 C 1.53871 * 110.03706 * 67.83245 * 16 15 14 22 22 F 1.39904 * 110.03638 * 238.57034 * 21 16 15 23 23 F 1.39902 * 110.02910 * 359.97438 * 21 16 15 24 24 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 26 26 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 27 27 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 28 28 H 1.08995 * 109.47220 * 60.00355 * 13 12 2 29 29 H 1.09003 * 109.46694 * 180.02562 * 13 12 2 30 30 H 1.08998 * 109.47259 * 299.99701 * 13 12 2 31 31 H 1.09000 * 109.47501 * 290.00119 * 14 12 2 32 32 H 1.08998 * 109.47177 * 50.00407 * 14 12 2 33 33 H 1.08996 * 109.46679 * 299.99959 * 15 14 12 34 34 H 1.08998 * 109.46839 * 60.00108 * 15 14 12 35 35 H 1.08999 * 110.48338 * 335.78396 * 18 16 15 36 36 H 1.09004 * 110.48730 * 98.28982 * 18 16 15 37 37 H 1.08993 * 110.75511 * 156.25610 * 19 18 16 38 38 H 1.09003 * 110.75527 * 279.44161 * 19 18 16 39 39 H 1.09003 * 110.48647 * 80.73224 * 20 19 18 40 40 H 1.08995 * 110.49168 * 203.37526 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 7 2.0196 -0.6924 1.1996 13 6 3.4850 -0.7945 1.1872 14 6 1.5486 -0.0262 2.4211 15 6 1.8625 -0.9041 3.6343 16 6 1.3714 -0.2105 4.9064 17 1 1.7819 0.7977 4.9641 18 6 1.7919 -1.0240 6.1479 19 6 0.5926 -0.8838 7.1181 20 6 -0.6266 -0.9381 6.1644 21 6 -0.1663 -0.1558 4.9170 22 9 -0.5982 1.1724 4.9980 23 9 -0.6751 -0.7555 3.7599 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 0.7173 1.1669 -3.4844 28 1 3.9186 0.2051 1.1592 29 1 3.8208 -1.3116 2.0861 30 1 3.8029 -1.3532 0.3069 31 1 2.0518 0.9347 2.5280 32 1 0.4722 0.1326 2.3563 33 1 1.3592 -1.8650 3.5273 34 1 2.9389 -1.0629 3.6990 35 1 1.9485 -2.0698 5.8835 36 1 2.6949 -0.6043 6.5912 37 1 0.5680 -1.7137 7.8242 38 1 0.6319 0.0692 7.6456 39 1 -0.8606 -1.9700 5.9026 40 1 -1.4900 -0.4543 6.6210 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878188564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:18:52 Heat of formation + Delta-G solvation = -108.806301 kcal Electronic energy + Delta-G solvation = -20979.804387 eV Core-core repulsion = 17657.753607 eV Total energy + Delta-G solvation = -3322.050780 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 261.160 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.78879 -46.81702 -38.04150 -36.76051 -33.20417 -31.63162 -29.07086 -28.10411 -27.06236 -24.98035 -24.01219 -21.81665 -21.22089 -19.98836 -19.14435 -17.56422 -16.74819 -16.26852 -16.06299 -15.18684 -14.68589 -14.36505 -14.20420 -13.77433 -13.63441 -13.41828 -13.17829 -12.86534 -12.70321 -12.20949 -12.05365 -11.85628 -11.61519 -11.46717 -11.31202 -11.00111 -10.98336 -10.87179 -10.73581 -10.59164 -10.49247 -10.03902 -9.96418 -9.94091 -9.56425 -8.76080 -8.36171 -7.07222 -5.94972 -3.99310 3.33072 3.40612 3.45091 3.79228 3.91747 4.15328 4.31138 4.46263 4.86778 4.88046 5.03160 5.19279 5.20779 5.30058 5.37976 5.46328 5.50405 5.59506 5.70486 5.82376 5.91179 5.93403 6.06853 6.14339 6.27733 6.41384 6.60136 6.65926 6.84215 6.99251 7.17611 7.26410 7.62097 7.82915 7.89705 8.30839 8.40903 8.69539 9.07773 9.65426 11.12008 Molecular weight = 261.16amu Principal moments of inertia in cm(-1) A = 0.039019 B = 0.004785 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.430733 B = 5850.347991 C = 6235.398808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.212 3.788 3 H -0.004 1.004 4 C -0.501 4.501 5 H 0.064 0.936 6 C 0.057 3.943 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.535 5.535 13 C 0.036 3.964 14 C 0.041 3.959 15 C -0.106 4.106 16 C -0.131 4.131 17 H 0.096 0.904 18 C -0.117 4.117 19 C -0.123 4.123 20 C -0.162 4.162 21 C 0.281 3.719 22 F -0.202 7.202 23 F -0.185 7.185 24 H 0.034 0.966 25 H 0.009 0.991 26 H 0.083 0.917 27 H 0.259 0.741 28 H 0.009 0.991 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.014 0.986 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.000 -2.930 18.970 19.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.106 3.894 3 H 0.013 0.987 4 C -0.540 4.540 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.260 5.260 13 C -0.112 4.112 14 C -0.088 4.088 15 C -0.144 4.144 16 C -0.150 4.150 17 H 0.114 0.886 18 C -0.155 4.155 19 C -0.160 4.160 20 C -0.200 4.200 21 C 0.245 3.755 22 F -0.183 7.183 23 F -0.165 7.165 24 H 0.053 0.947 25 H 0.028 0.972 26 H 0.102 0.898 27 H 0.069 0.931 28 H 0.027 0.973 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.032 0.968 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.116 0.884 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.299 -3.268 18.766 19.051 hybrid contribution 0.480 0.640 -1.051 1.321 sum 0.181 -2.628 17.715 17.909 Atomic orbital electron populations 1.21824 0.97671 0.99647 0.99773 1.19242 0.92398 0.91848 0.85945 0.98673 1.21209 1.30863 1.12091 0.89805 0.91839 1.24943 0.95293 0.95103 0.99008 1.69915 1.37129 1.23080 1.23190 0.86475 0.78584 0.79564 0.82976 1.19771 1.21050 1.21217 1.62115 1.08888 1.52736 1.02238 1.22239 0.89230 0.98889 1.00892 1.22359 1.02068 0.93933 0.90405 1.21627 1.01228 0.99961 0.91574 1.22841 0.91558 1.02705 0.97943 0.88603 1.22418 0.98255 1.00880 0.93904 1.22465 0.93478 1.02838 0.97251 1.23354 1.00129 1.02129 0.94378 1.21823 0.93599 0.76109 0.83956 1.93002 1.91495 1.37292 1.96477 1.93032 1.88759 1.83034 1.51698 0.94696 0.97225 0.89839 0.93114 0.97288 0.93874 0.90780 0.96764 0.89535 0.90382 0.91241 0.90316 0.90464 0.90218 0.90697 0.88396 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 8.77 37.16 0.33 -3.10 16 2 C 0.21 5.63 2.06 -68.86 -0.14 5.49 16 3 H 0.00 -0.13 8.14 -51.93 -0.42 -0.55 16 4 C -0.50 -14.16 7.92 -34.44 -0.27 -14.43 16 5 H 0.06 1.78 6.39 -52.49 -0.34 1.45 16 6 C 0.06 1.63 5.31 -17.82 -0.09 1.53 16 7 N -0.89 -26.25 11.33 55.43 0.63 -25.62 16 8 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 12 N -0.54 -12.14 4.62 -236.28 -1.09 -13.24 16 13 C 0.04 0.74 9.05 60.07 0.54 1.28 16 14 C 0.04 0.80 4.49 -3.82 -0.02 0.78 16 15 C -0.11 -1.59 4.06 -26.73 -0.11 -1.70 16 16 C -0.13 -1.60 2.78 -89.51 -0.25 -1.85 16 17 H 0.10 1.18 8.02 -51.92 -0.42 0.76 16 18 C -0.12 -1.03 6.36 -25.07 -0.16 -1.19 16 19 C -0.12 -0.94 6.91 -24.74 -0.17 -1.11 16 20 C -0.16 -1.56 6.40 -25.07 -0.16 -1.72 16 21 C 0.28 3.77 2.29 -25.62 -0.06 3.71 16 22 F -0.20 -3.03 17.04 2.25 0.04 -2.99 16 23 F -0.18 -3.07 13.39 2.25 0.03 -3.04 16 24 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.01 0.22 6.20 -51.93 -0.32 -0.10 16 26 H 0.08 2.35 6.08 -51.93 -0.32 2.04 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.04 0.73 6.30 -51.93 -0.33 0.41 16 30 H 0.07 1.60 6.23 -51.93 -0.32 1.28 16 31 H 0.01 0.28 8.12 -51.93 -0.42 -0.14 16 32 H 0.09 1.81 3.64 -51.93 -0.19 1.62 16 33 H 0.08 1.22 7.63 -51.93 -0.40 0.83 16 34 H 0.07 0.97 6.47 -51.93 -0.34 0.64 16 35 H 0.08 0.67 7.85 -51.93 -0.41 0.26 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.88 8.12 -51.93 -0.42 0.46 16 40 H 0.09 0.78 8.11 -51.93 -0.42 0.36 16 LS Contribution 309.97 15.07 4.67 4.67 Total: -1.00 -30.51 309.97 -7.62 -38.12 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -6.31 Total: -2.34 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -0.56 Total: -12.31 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: -0.46 Total: -38.86 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.07 Total: -6.03 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.51 -7.62 -38.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878188564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.683 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds