Wall clock time and date at job start Mon Mar 30 2020 00:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38233 * 120.00207 * 2 1 4 4 C 1.38234 * 120.00037 * 179.72405 * 3 2 1 5 5 C 1.38234 * 120.00240 * 0.26327 * 4 3 2 6 6 C 1.50701 * 120.00243 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.47057 * 89.99949 * 6 5 4 8 8 C 1.52997 * 109.46937 * 179.97438 * 7 6 5 9 9 H 1.08990 * 109.47616 * 305.00030 * 8 7 6 10 10 C 1.52998 * 109.46786 * 184.99761 * 8 7 6 11 11 N 1.46903 * 109.47040 * 65.00350 * 8 7 6 12 12 C 1.46899 * 111.00056 * 204.99627 * 11 8 7 13 13 H 1.08994 * 109.47106 * 325.00144 * 12 11 8 14 14 C 1.53002 * 109.46969 * 84.99967 * 12 11 8 15 15 C 1.50696 * 109.47246 * 204.99673 * 12 11 8 16 16 H 1.08004 * 119.99985 * 0.02562 * 15 12 11 17 17 C 1.37872 * 120.00280 * 179.97438 * 15 12 11 18 18 N 1.31517 * 120.00423 * 180.02562 * 17 15 12 19 19 Si 1.86808 * 119.99684 * 0.02562 * 17 15 12 20 20 H 1.48498 * 109.46943 * 90.00229 * 19 17 15 21 21 H 1.48498 * 109.46978 * 209.99771 * 19 17 15 22 22 H 1.48496 * 109.47121 * 330.00064 * 19 17 15 23 23 C 1.38238 * 119.99693 * 359.97438 * 5 4 3 24 24 C 1.38234 * 120.00082 * 0.02562 * 23 5 4 25 25 H 1.09000 * 109.47363 * 89.99511 * 1 2 3 26 26 H 1.09000 * 109.47097 * 209.99342 * 1 2 3 27 27 H 1.09001 * 109.47081 * 329.99847 * 1 2 3 28 28 H 1.08002 * 120.00157 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.00009 * 180.28389 * 4 3 2 30 30 H 1.08996 * 109.47280 * 210.00015 * 6 5 4 31 31 H 1.08999 * 109.46887 * 329.99909 * 6 5 4 32 32 H 1.08996 * 109.47130 * 300.00158 * 7 6 5 33 33 H 1.09006 * 109.47018 * 59.99966 * 7 6 5 34 34 H 1.09001 * 109.47249 * 60.00805 * 10 8 7 35 35 H 1.09005 * 109.46909 * 180.02562 * 10 8 7 36 36 H 1.08997 * 109.47797 * 300.00074 * 10 8 7 37 37 H 1.00899 * 111.00102 * 81.03823 * 11 8 7 38 38 H 1.08995 * 109.47171 * 59.99608 * 14 12 11 39 39 H 1.08996 * 109.46978 * 180.02562 * 14 12 11 40 40 H 1.09000 * 109.46935 * 299.99941 * 14 12 11 41 41 H 0.96998 * 120.00030 * 180.02562 * 18 17 15 42 42 H 1.08001 * 119.99643 * 179.97438 * 23 5 4 43 43 H 1.07999 * 120.00025 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.2717 -0.0001 0.0060 6 6 5.7787 -0.0001 0.0129 7 6 6.2821 -0.0036 1.4577 8 6 7.8120 -0.0043 1.4647 9 1 8.1777 -0.8448 0.8751 10 6 8.3154 -0.1334 2.9037 11 7 8.3049 1.2521 0.8845 12 6 9.6547 1.0823 0.3303 13 1 10.2155 0.3810 0.9481 14 6 9.5555 0.5387 -1.0964 15 6 10.3617 2.4130 0.3129 16 1 9.8587 3.2965 0.6774 17 6 11.6509 2.5024 -0.1675 18 7 12.2681 3.6637 -0.1823 19 14 12.5211 0.9741 -0.7973 20 1 12.2555 0.8165 -2.2499 21 1 13.9828 1.1090 -0.5732 22 1 12.0166 -0.2180 -0.0697 23 6 3.5805 -1.1972 0.0011 24 6 2.1981 -1.1972 -0.0047 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5139 28 1 1.6582 2.1325 0.0004 29 1 4.1205 2.1324 0.0104 30 1 6.1443 -0.8888 -0.5014 31 1 6.1443 0.8911 -0.4971 32 1 5.9164 0.8851 1.9720 33 1 5.9164 -0.8948 1.9678 34 1 7.9498 -1.0656 3.3343 35 1 9.4054 -0.1334 2.9087 36 1 7.9498 0.7072 3.4934 37 1 8.2843 1.9971 1.5647 38 1 8.9947 1.2400 -1.7142 39 1 10.5571 0.4123 -1.5075 40 1 9.0442 -0.4238 -1.0838 41 1 13.1750 3.7266 -0.5206 42 1 4.1205 -2.1325 0.0009 43 1 1.6581 -2.1325 -0.0090 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171663203.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:30 Heat of formation + Delta-G solvation = 2.357509 kcal Electronic energy + Delta-G solvation = -19264.168136 eV Core-core repulsion = 16501.167310 eV Total energy + Delta-G solvation = -2763.000826 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 261.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.45366 -37.33181 -34.53001 -33.06444 -31.37024 -30.87646 -29.83109 -27.48468 -26.40453 -25.02775 -23.07707 -22.66414 -20.67217 -20.31813 -19.65942 -16.69917 -15.99578 -15.63265 -15.32172 -15.04109 -14.51869 -13.99588 -13.72920 -13.60334 -13.38746 -13.10587 -12.82215 -12.69623 -12.38627 -12.28456 -12.24033 -12.09069 -11.71536 -11.31406 -11.15527 -11.04272 -10.91452 -10.69092 -10.55123 -10.34800 -10.13334 -10.07645 -9.45621 -9.01225 -8.88387 -8.60677 -8.39440 -7.41624 -6.09274 -4.08664 1.38544 1.44435 3.27099 3.36323 3.38775 3.78627 4.38939 4.78709 4.80531 4.97376 5.02881 5.06602 5.18825 5.24957 5.34655 5.42349 5.53443 5.57584 5.60157 5.68101 5.74010 5.79754 5.95881 6.01246 6.05249 6.17804 6.19692 6.28893 6.39337 6.46765 6.49356 6.51503 6.59433 6.60506 6.68396 6.76832 6.86620 6.89032 7.08847 7.42213 7.60372 7.99084 8.39732 8.64357 8.96194 9.53562 11.03846 Molecular weight = 261.18amu Principal moments of inertia in cm(-1) A = 0.034322 B = 0.003719 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.599009 B = 7527.493011 C = 7666.491854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.103 4.103 3 C -0.120 4.120 4 C -0.112 4.112 5 C -0.074 4.074 6 C -0.076 4.076 7 C -0.094 4.094 8 C 0.078 3.922 9 H 0.069 0.931 10 C -0.179 4.179 11 N -0.671 5.671 12 C 0.182 3.818 13 H 0.000 1.000 14 C -0.137 4.137 15 C -0.518 4.518 16 H 0.078 0.922 17 C 0.071 3.929 18 N -0.900 5.900 19 Si 0.891 3.109 20 H -0.278 1.278 21 H -0.299 1.299 22 H -0.269 1.269 23 C -0.119 4.119 24 C -0.122 4.122 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.339 0.661 38 H 0.057 0.943 39 H 0.035 0.965 40 H 0.025 0.975 41 H 0.264 0.736 42 H 0.118 0.882 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.216 -9.701 1.830 21.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.103 4.103 3 C -0.138 4.138 4 C -0.130 4.130 5 C -0.074 4.074 6 C -0.113 4.113 7 C -0.132 4.132 8 C -0.033 4.033 9 H 0.087 0.913 10 C -0.238 4.238 11 N -0.302 5.302 12 C 0.073 3.927 13 H 0.018 0.982 14 C -0.195 4.195 15 C -0.556 4.556 16 H 0.096 0.904 17 C -0.131 4.131 18 N -0.538 5.538 19 Si 0.721 3.279 20 H -0.205 1.205 21 H -0.226 1.226 22 H -0.194 1.194 23 C -0.137 4.137 24 C -0.140 4.140 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.136 0.864 29 H 0.143 0.857 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.157 0.843 38 H 0.076 0.924 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.136 0.864 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -19.357 -9.695 1.175 21.681 hybrid contribution 1.170 -0.814 0.387 1.477 sum -18.187 -10.510 1.562 21.063 Atomic orbital electron populations 1.20750 0.91628 1.02426 1.02005 1.19851 0.95772 0.93366 1.01266 1.21020 0.94333 0.97289 1.01172 1.21146 0.93903 0.98151 0.99784 1.20156 0.96676 0.92809 0.97784 1.20580 0.88921 1.03917 0.97931 1.21504 0.95044 1.01029 0.95609 1.21598 0.94033 0.94612 0.93014 0.91268 1.22490 1.01822 1.01125 0.98377 1.60606 1.26689 1.04697 1.38245 1.19500 0.85324 0.96667 0.91180 0.98209 1.22079 0.98917 0.98511 0.99950 1.21122 0.98407 0.93616 1.42472 0.90424 1.24936 0.97184 0.95768 0.95240 1.69894 1.13163 1.23879 1.46853 0.86808 0.77673 0.84017 0.79356 1.20542 1.22642 1.19412 1.21060 0.93964 0.97785 1.00886 1.20966 0.94250 0.97233 1.01563 0.91513 0.91868 0.91780 0.86423 0.85744 0.91843 0.89042 0.92112 0.92841 0.93256 0.92425 0.92755 0.84266 0.92405 0.94665 0.95631 0.92628 0.86357 0.86594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.00 0.36 -0.51 16 2 C -0.10 -1.10 5.88 -104.63 -0.62 -1.71 16 3 C -0.12 -1.36 9.70 -39.58 -0.38 -1.75 16 4 C -0.11 -1.41 9.70 -39.58 -0.38 -1.80 16 5 C -0.07 -0.96 5.13 -104.62 -0.54 -1.50 16 6 C -0.08 -1.05 5.23 -27.88 -0.15 -1.20 16 7 C -0.09 -1.29 4.87 -26.73 -0.13 -1.42 16 8 C 0.08 1.27 2.40 -67.71 -0.16 1.10 16 9 H 0.07 1.17 7.11 -51.93 -0.37 0.80 16 10 C -0.18 -2.71 9.15 37.16 0.34 -2.37 16 11 N -0.67 -13.11 5.50 -100.96 -0.56 -13.66 16 12 C 0.18 4.24 2.00 -68.87 -0.14 4.10 16 13 H 0.00 0.01 6.17 -51.93 -0.32 -0.31 16 14 C -0.14 -3.03 8.88 37.16 0.33 -2.70 16 15 C -0.52 -14.36 9.17 -34.44 -0.32 -14.68 16 16 H 0.08 2.32 7.86 -52.48 -0.41 1.91 16 17 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 18 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 19 Si 0.89 22.14 24.37 -169.99 -4.14 17.99 16 20 H -0.28 -6.77 6.87 56.52 0.39 -6.39 16 21 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 22 H -0.27 -6.43 6.53 56.52 0.37 -6.07 16 23 C -0.12 -1.41 9.70 -39.58 -0.38 -1.79 16 24 C -0.12 -1.33 9.70 -39.58 -0.38 -1.71 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 27 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 28 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 31 H 0.09 1.44 7.70 -51.93 -0.40 1.04 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.97 7.43 -51.93 -0.39 0.59 16 36 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 37 H 0.34 6.75 7.96 -39.29 -0.31 6.43 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.03 0.81 3.27 -51.93 -0.17 0.64 16 40 H 0.02 0.49 7.43 -51.93 -0.39 0.10 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 43 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 339.89 15.07 5.12 5.12 Total: -1.00 -29.55 339.89 -8.88 -38.42 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -7.42 Total: 4.81 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -2.65 Total: -26.01 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.22 Total: -40.34 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.14 Total: 17.99 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.55 -8.88 -38.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171663203.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.782 kcal (2) G-P(sol) polarization free energy of solvation -29.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds