Wall clock time and date at job start Mon Mar 30 2020 00:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38236 * 119.99775 * 2 1 4 4 C 1.38238 * 119.99939 * 179.97438 * 3 2 1 5 5 C 1.38236 * 119.99742 * 359.95907 * 4 3 2 6 6 C 1.50707 * 119.99615 * 180.02562 * 5 4 3 7 7 C 1.52993 * 109.47074 * 90.00061 * 6 5 4 8 8 C 1.53002 * 109.46916 * 179.97438 * 7 6 5 9 9 H 1.08995 * 109.47033 * 54.99726 * 8 7 6 10 10 C 1.52999 * 109.46958 * 174.99989 * 8 7 6 11 11 N 1.46904 * 109.46849 * 294.99354 * 8 7 6 12 12 C 1.46899 * 110.99754 * 155.91699 * 11 8 7 13 13 H 1.09007 * 109.46842 * 33.66445 * 12 11 8 14 14 C 1.52996 * 109.47200 * 153.66277 * 12 11 8 15 15 C 1.50701 * 109.47223 * 273.66501 * 12 11 8 16 16 H 1.08002 * 119.99658 * 0.02562 * 15 12 11 17 17 C 1.37879 * 120.00059 * 179.97438 * 15 12 11 18 18 N 1.31515 * 120.00094 * 179.97438 * 17 15 12 19 19 Si 1.86799 * 120.00046 * 359.97438 * 17 15 12 20 20 H 1.48503 * 109.46922 * 89.99990 * 19 17 15 21 21 H 1.48496 * 109.47352 * 209.99803 * 19 17 15 22 22 H 1.48497 * 109.46969 * 330.00248 * 19 17 15 23 23 C 1.38233 * 120.00096 * 0.27544 * 5 4 3 24 24 C 1.38225 * 120.00020 * 179.97438 * 2 1 3 25 25 H 1.09004 * 109.47254 * 89.99964 * 1 2 3 26 26 H 1.08997 * 109.47132 * 209.99858 * 1 2 3 27 27 H 1.09007 * 109.47245 * 330.00170 * 1 2 3 28 28 H 1.08003 * 120.00196 * 359.97438 * 3 2 1 29 29 H 1.07998 * 119.99786 * 179.97438 * 4 3 2 30 30 H 1.08998 * 109.47382 * 329.99721 * 6 5 4 31 31 H 1.09000 * 109.46718 * 209.99704 * 6 5 4 32 32 H 1.08998 * 109.47294 * 59.99605 * 7 6 5 33 33 H 1.09000 * 109.47057 * 299.99436 * 7 6 5 34 34 H 1.09008 * 109.47285 * 295.22506 * 10 8 7 35 35 H 1.09006 * 109.47419 * 55.22292 * 10 8 7 36 36 H 1.09001 * 109.47221 * 175.22084 * 10 8 7 37 37 H 1.00898 * 111.00530 * 279.86936 * 11 8 7 38 38 H 1.08992 * 109.47186 * 306.14287 * 14 12 11 39 39 H 1.08999 * 109.46690 * 66.14031 * 14 12 11 40 40 H 1.09001 * 109.47300 * 186.13728 * 14 12 11 41 41 H 0.96996 * 120.00175 * 179.97438 * 18 17 15 42 42 H 1.07998 * 119.99981 * 179.73224 * 23 5 4 43 43 H 1.07998 * 120.00358 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2716 0.0001 0.0019 6 6 5.7787 0.0001 0.0031 7 6 6.2875 0.0012 1.4459 8 6 7.8176 0.0006 1.4471 9 1 8.1816 0.8417 0.8572 10 6 8.3265 0.1274 2.8844 11 7 8.3071 -1.2554 0.8633 12 6 9.6635 -1.0915 0.3236 13 1 10.2155 -0.3802 0.9380 14 6 10.3835 -2.4414 0.3349 15 6 9.5827 -0.5771 -1.0906 16 1 8.6200 -0.3902 -1.5430 17 6 10.7378 -0.3441 -1.8065 18 7 10.6673 0.1044 -3.0408 19 14 12.4029 -0.6653 -1.0233 20 1 12.8144 -2.0667 -1.2922 21 1 13.4080 0.2646 -1.5979 22 1 12.3101 -0.4494 0.4430 23 6 3.5805 -1.1971 -0.0030 24 6 2.1981 -1.1971 0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6581 2.1325 -0.0004 29 1 4.1204 2.1325 0.0001 30 1 6.1424 0.8897 -0.5111 31 1 6.1424 -0.8902 -0.5098 32 1 5.9238 -0.8884 1.9601 33 1 5.9238 0.8916 1.9588 34 1 8.0347 1.0966 3.2890 35 1 7.8942 -0.6660 3.4942 36 1 9.4131 0.0418 2.8939 37 1 8.2747 -2.0048 1.5382 38 1 10.3463 -2.8646 1.3386 39 1 9.8941 -3.1200 -0.3638 40 1 11.4228 -2.3014 0.0378 41 1 11.4799 0.2686 -3.5443 42 1 4.1205 -2.1323 -0.0063 43 1 1.6582 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171663204.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:33 Heat of formation + Delta-G solvation = 4.638850 kcal Electronic energy + Delta-G solvation = -19363.669245 eV Core-core repulsion = 16600.767346 eV Total energy + Delta-G solvation = -2762.901899 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 261.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.31842 -37.26140 -34.45239 -32.98124 -31.41827 -30.75046 -29.71863 -27.40942 -26.29304 -25.04629 -22.94417 -22.53379 -20.48647 -20.12819 -19.88448 -16.59272 -15.84433 -15.53042 -14.99629 -14.91285 -14.39790 -14.27792 -13.76168 -13.46031 -13.25300 -13.02228 -12.80106 -12.68818 -12.40981 -12.18389 -12.15816 -12.09956 -11.69553 -11.16234 -11.05503 -10.92644 -10.69039 -10.54362 -10.39396 -10.24389 -10.15210 -10.03290 -9.49579 -9.18505 -8.75792 -8.50992 -8.25926 -7.30539 -6.00759 -3.97014 1.52039 1.57017 3.27856 3.36806 3.39670 3.91891 4.43531 4.90162 4.92306 5.03596 5.10301 5.18923 5.29780 5.30834 5.48178 5.51751 5.63255 5.68291 5.73924 5.76751 5.84571 5.85424 6.06637 6.11923 6.17068 6.24978 6.30464 6.31465 6.38577 6.42739 6.54282 6.56520 6.64190 6.70680 6.75350 6.84473 6.91698 7.04760 7.22427 7.22936 7.76308 8.03475 8.32528 8.80549 9.11984 9.62992 11.12824 Molecular weight = 261.18amu Principal moments of inertia in cm(-1) A = 0.028442 B = 0.004110 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.232881 B = 6810.829133 C = 7191.802836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.105 4.105 3 C -0.122 4.122 4 C -0.118 4.118 5 C -0.071 4.071 6 C -0.076 4.076 7 C -0.091 4.091 8 C 0.085 3.915 9 H 0.085 0.915 10 C -0.180 4.180 11 N -0.667 5.667 12 C 0.182 3.818 13 H 0.000 1.000 14 C -0.156 4.156 15 C -0.492 4.492 16 H 0.082 0.918 17 C 0.066 3.934 18 N -0.902 5.902 19 Si 0.883 3.117 20 H -0.281 1.281 21 H -0.298 1.298 22 H -0.271 1.271 23 C -0.113 4.113 24 C -0.121 4.121 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.317 0.683 38 H 0.026 0.974 39 H 0.061 0.939 40 H 0.041 0.959 41 H 0.262 0.738 42 H 0.123 0.877 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.875 -0.356 9.533 17.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.105 4.105 3 C -0.140 4.140 4 C -0.136 4.136 5 C -0.071 4.071 6 C -0.113 4.113 7 C -0.129 4.129 8 C -0.026 4.026 9 H 0.104 0.896 10 C -0.239 4.239 11 N -0.296 5.296 12 C 0.073 3.927 13 H 0.018 0.982 14 C -0.213 4.213 15 C -0.530 4.530 16 H 0.100 0.900 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.714 3.286 20 H -0.208 1.208 21 H -0.226 1.226 22 H -0.197 1.197 23 C -0.131 4.131 24 C -0.139 4.139 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.134 0.866 29 H 0.138 0.862 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.133 0.867 38 H 0.045 0.955 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.141 0.859 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.070 -0.193 8.751 17.428 hybrid contribution 1.635 -0.142 1.113 1.983 sum -13.435 -0.335 9.864 16.671 Atomic orbital electron populations 1.20740 0.91725 1.02286 1.01954 1.19822 0.95681 0.93395 1.01613 1.20967 0.94280 0.97181 1.01558 1.21098 0.93918 0.97959 1.00628 1.20228 0.96944 0.92721 0.97158 1.20579 0.88386 1.04723 0.97646 1.21466 0.95044 1.00548 0.95825 1.21549 0.93908 0.94806 0.92300 0.89639 1.22526 1.01307 1.01184 0.98884 1.60577 1.26640 1.04725 1.37666 1.19619 0.84590 0.92084 0.96408 0.98214 1.22331 0.99926 1.00204 0.98867 1.21041 0.94795 1.41767 0.95447 0.89988 1.24951 0.98621 0.95204 0.94740 1.69885 1.28272 1.46393 1.09599 0.86942 0.84749 0.77296 0.79612 1.20763 1.22598 1.19654 1.21120 0.93829 0.98107 1.00078 1.20986 0.94327 0.97182 1.01450 0.91558 0.91903 0.91930 0.86635 0.86222 0.91212 0.88899 0.92682 0.92925 0.92951 0.93263 0.92888 0.86666 0.95468 0.92013 0.94018 0.92821 0.85931 0.86589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 36.00 0.36 -0.60 16 2 C -0.11 -1.24 5.88 -104.63 -0.62 -1.86 16 3 C -0.12 -1.49 9.70 -39.58 -0.38 -1.87 16 4 C -0.12 -1.60 9.70 -39.58 -0.38 -1.99 16 5 C -0.07 -1.04 5.13 -104.62 -0.54 -1.57 16 6 C -0.08 -1.23 5.23 -27.88 -0.15 -1.38 16 7 C -0.09 -1.37 4.87 -26.73 -0.13 -1.50 16 8 C 0.09 1.47 2.40 -67.71 -0.16 1.31 16 9 H 0.09 1.72 7.69 -51.93 -0.40 1.32 16 10 C -0.18 -2.69 9.16 37.16 0.34 -2.35 16 11 N -0.67 -12.92 5.50 -100.95 -0.55 -13.47 16 12 C 0.18 4.18 1.99 -68.87 -0.14 4.04 16 13 H 0.00 0.01 6.09 -51.93 -0.32 -0.31 16 14 C -0.16 -3.33 8.63 37.16 0.32 -3.01 16 15 C -0.49 -13.61 9.14 -34.44 -0.31 -13.93 16 16 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 17 C 0.07 1.89 5.45 -17.82 -0.10 1.79 16 18 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 19 Si 0.88 21.97 24.31 -169.99 -4.13 17.84 16 20 H -0.28 -6.83 6.92 56.52 0.39 -6.44 16 21 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 22 H -0.27 -6.48 6.53 56.52 0.37 -6.11 16 23 C -0.11 -1.57 9.70 -39.58 -0.38 -1.95 16 24 C -0.12 -1.50 9.70 -39.59 -0.38 -1.88 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.48 8.08 -51.93 -0.42 0.07 16 27 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 28 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 29 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 31 H 0.09 1.71 7.69 -51.93 -0.40 1.31 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.85 7.33 -51.93 -0.38 0.47 16 37 H 0.32 5.50 8.01 -39.29 -0.31 5.18 16 38 H 0.03 0.49 8.00 -51.93 -0.42 0.07 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.04 0.93 3.46 -51.93 -0.18 0.75 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 43 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 341.00 15.07 5.14 5.14 Total: -1.00 -29.81 341.00 -8.92 -38.73 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -7.49 Total: 5.37 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: -2.65 Total: -26.76 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.22 Total: -40.32 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.13 Total: 17.84 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.81 -8.92 -38.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171663204.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.368 kcal (2) G-P(sol) polarization free energy of solvation -29.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds