Wall clock time and date at job start Mon Mar 30 2020 00:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46949 * 2 1 4 4 C 1.52996 * 109.46824 * 240.00146 * 2 1 3 5 5 C 1.52998 * 109.46929 * 175.00282 * 4 2 1 6 6 C 1.50706 * 109.47348 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99758 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00102 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00217 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99766 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47057 * 179.97438 * 10 8 6 12 12 H 1.48500 * 109.47389 * 300.00068 * 10 8 6 13 13 H 1.48504 * 109.47102 * 60.00417 * 10 8 6 14 14 N 1.46898 * 109.47040 * 120.00320 * 2 1 3 15 15 C 1.46843 * 111.00093 * 59.20777 * 14 2 1 16 16 C 1.53033 * 109.52606 * 174.16234 * 15 14 2 17 17 C 1.53118 * 109.27954 * 59.17617 * 16 15 14 18 18 C 1.53006 * 109.52635 * 182.44254 * 17 16 15 19 19 F 1.39902 * 109.57328 * 62.28499 * 17 16 15 20 20 C 1.53119 * 109.16300 * 302.35126 * 17 16 15 21 21 H 1.08999 * 109.49843 * 297.70830 * 20 17 16 22 22 F 1.39895 * 109.53561 * 177.61496 * 20 17 16 23 23 C 1.46846 * 110.99732 * 294.99915 * 14 2 1 24 24 H 1.09004 * 109.46871 * 59.99523 * 1 2 3 25 25 H 1.08990 * 109.47144 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46582 * 299.99965 * 1 2 3 27 27 H 1.09000 * 109.47441 * 55.00371 * 4 2 1 28 28 H 1.09002 * 109.47087 * 294.99817 * 4 2 1 29 29 H 1.09001 * 109.47671 * 60.00109 * 5 4 2 30 30 H 1.09006 * 109.47297 * 299.99829 * 5 4 2 31 31 H 0.97001 * 119.99646 * 359.97438 * 9 8 6 32 32 H 1.09003 * 109.46560 * 294.17606 * 15 14 2 33 33 H 1.08998 * 109.46559 * 54.14088 * 15 14 2 34 34 H 1.09003 * 109.50449 * 299.23755 * 16 15 14 35 35 H 1.08997 * 109.54007 * 179.13995 * 16 15 14 36 36 H 1.08996 * 109.47196 * 179.68235 * 18 17 16 37 37 H 1.09000 * 109.47027 * 299.68659 * 18 17 16 38 38 H 1.08998 * 109.46737 * 59.68196 * 18 17 16 39 39 H 1.09001 * 109.46484 * 305.85210 * 23 14 2 40 40 H 1.08996 * 109.46578 * 65.83854 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0672 -1.3243 -2.5439 7 1 3.3688 -1.8053 -3.2126 8 6 5.4184 -1.3605 -2.8156 9 7 6.2690 -0.7752 -2.0010 10 14 6.0411 -2.2424 -4.3401 11 1 7.5210 -2.1365 -4.4033 12 1 5.6489 -3.6733 -4.2792 13 1 5.4486 -1.6177 -5.5500 14 7 2.0197 -0.6926 1.1994 15 6 1.5335 -2.0775 1.2428 16 6 2.1776 -2.8090 2.4225 17 6 1.8222 -2.0826 3.7228 18 6 2.5132 -2.7738 4.9000 19 9 0.4363 -2.1111 3.9119 20 6 2.2965 -0.6295 3.6325 21 1 3.3810 -0.6067 3.5254 22 9 1.9275 0.0561 4.7947 23 6 1.6489 0.0388 2.4176 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.6054 -0.2617 -2.1370 28 1 1.7516 -1.7715 -1.2056 29 1 3.9995 -1.0729 -0.4260 30 1 3.8532 0.4370 -1.3573 31 1 5.9456 -0.3176 -1.2092 32 1 0.4500 -2.0785 1.3627 33 1 1.7963 -2.5840 0.3141 34 1 3.2602 -2.8205 2.2964 35 1 1.8052 -3.8325 2.4641 36 1 2.2642 -2.2526 5.8244 37 1 2.1750 -3.8080 4.9635 38 1 3.5927 -2.7531 4.7507 39 1 1.9957 1.0694 2.3422 40 1 0.5650 0.0278 2.5321 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492421.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:41 Heat of formation + Delta-G solvation = -118.838340 kcal Electronic energy + Delta-G solvation = -21131.649920 eV Core-core repulsion = 17809.164118 eV Total energy + Delta-G solvation = -3322.485802 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 261.160 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.33960 -47.18562 -39.09092 -35.28181 -33.44901 -31.58198 -30.46722 -29.11030 -27.35183 -24.75498 -23.42490 -22.89926 -21.49223 -20.29071 -19.08463 -16.84995 -16.58769 -16.33097 -15.94209 -15.73894 -15.37644 -14.75197 -14.01326 -13.84877 -13.72796 -13.60336 -13.27909 -12.84453 -12.77028 -12.57255 -12.44558 -12.30180 -12.18597 -11.89304 -11.57309 -11.38125 -11.14929 -11.02577 -10.75967 -10.43644 -10.26961 -10.17594 -10.07154 -9.77758 -9.59299 -8.43145 -8.25328 -8.02598 -6.27602 -3.95604 3.46461 3.48357 3.67064 3.82446 4.00268 4.27551 4.38464 4.50434 4.59740 4.70094 4.94612 5.21206 5.23416 5.30585 5.33022 5.42264 5.45565 5.49682 5.54669 5.60995 5.63505 5.66441 5.85526 5.93298 5.99210 6.10568 6.13233 6.18874 6.26835 6.48508 6.68271 7.05038 7.26281 7.29533 7.59011 7.76616 8.32611 8.56664 8.98685 9.76388 11.13316 Molecular weight = 261.16amu Principal moments of inertia in cm(-1) A = 0.025853 B = 0.005202 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.798494 B = 5381.007272 C = 5741.176234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.083 3.917 3 H 0.080 0.920 4 C -0.097 4.097 5 C 0.017 3.983 6 C -0.602 4.602 7 H 0.044 0.956 8 C 0.014 3.986 9 N -0.915 5.915 10 Si 1.065 2.935 11 H -0.283 1.283 12 H -0.289 1.289 13 H -0.290 1.290 14 N -0.516 5.516 15 C 0.044 3.956 16 C -0.134 4.134 17 C 0.094 3.906 18 C -0.173 4.173 19 F -0.203 7.203 20 C 0.078 3.922 21 H 0.110 0.890 22 F -0.205 7.205 23 C 0.029 3.971 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.022 0.978 30 H 0.001 0.999 31 H 0.270 0.730 32 H 0.039 0.961 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.903 -2.005 11.604 15.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.025 4.025 3 H 0.098 0.902 4 C -0.135 4.135 5 C -0.020 4.020 6 C -0.641 4.641 7 H 0.062 0.938 8 C -0.189 4.189 9 N -0.552 5.552 10 Si 0.894 3.106 11 H -0.209 1.209 12 H -0.216 1.216 13 H -0.216 1.216 14 N -0.240 5.240 15 C -0.083 4.083 16 C -0.172 4.172 17 C 0.075 3.925 18 C -0.230 4.230 19 F -0.184 7.184 20 C 0.041 3.959 21 H 0.128 0.872 22 F -0.186 7.186 23 C -0.100 4.100 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.040 0.960 30 H 0.019 0.981 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.056 -2.390 10.766 13.657 hybrid contribution -2.479 0.500 0.973 2.709 sum -10.535 -1.890 11.739 15.886 Atomic orbital electron populations 1.22504 0.98408 1.01920 1.01647 1.21890 0.91519 0.98623 0.90468 0.90193 1.21645 1.00008 0.98566 0.93263 1.19126 0.89701 0.96027 0.97191 1.22123 0.94538 1.37791 1.09605 0.93790 1.25759 0.93537 0.96956 1.02672 1.70762 1.37285 1.33345 1.13818 0.83600 0.76161 0.75813 0.75006 1.20864 1.21599 1.21618 1.62023 1.59488 1.01619 1.00909 1.22209 0.97090 0.89594 0.99417 1.22183 1.03871 0.99236 0.91897 1.21597 0.76778 0.96038 0.98044 1.22347 1.01746 1.01503 0.97452 1.92845 1.31568 1.97522 1.96474 1.22130 1.02005 0.89761 0.82042 0.87243 1.92804 1.93705 1.81316 1.50788 1.22554 0.98923 0.98867 0.89683 0.92011 0.92510 0.93223 0.92877 0.92955 0.95963 0.98110 0.91975 0.94258 0.88454 0.88510 0.89758 0.91042 0.90921 0.90161 0.89348 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.58 8.50 37.16 0.32 -2.26 16 2 C 0.08 1.36 2.35 -67.71 -0.16 1.20 16 3 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 4 C -0.10 -1.94 4.44 -26.73 -0.12 -2.06 16 5 C 0.02 0.42 4.17 -27.88 -0.12 0.30 16 6 C -0.60 -17.10 9.11 -34.44 -0.31 -17.41 16 7 H 0.04 1.23 7.74 -52.48 -0.41 0.83 16 8 C 0.01 0.41 5.46 -17.82 -0.10 0.32 16 9 N -0.92 -28.15 13.65 55.43 0.76 -27.39 16 10 Si 1.07 25.40 29.90 -169.99 -5.08 20.32 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 14 N -0.52 -8.11 4.10 -226.70 -0.93 -9.04 16 15 C 0.04 0.65 4.53 -3.84 -0.02 0.63 16 16 C -0.13 -1.69 5.17 -26.65 -0.14 -1.82 16 17 C 0.09 1.17 1.04 -90.49 -0.09 1.08 16 18 C -0.17 -1.75 8.84 37.16 0.33 -1.43 16 19 F -0.20 -2.92 15.94 2.25 0.04 -2.89 16 20 C 0.08 1.02 3.22 -26.65 -0.09 0.94 16 21 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 22 F -0.21 -2.89 16.63 2.25 0.04 -2.86 16 23 C 0.03 0.40 4.65 -3.83 -0.02 0.38 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.78 6.52 -51.93 -0.34 0.44 16 26 H 0.05 0.64 6.65 -51.93 -0.35 0.30 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 1.03 6.05 -51.93 -0.31 0.72 16 29 H 0.02 0.58 7.62 -51.93 -0.40 0.19 16 30 H 0.00 0.02 8.01 -51.93 -0.42 -0.40 16 31 H 0.27 8.28 7.22 -40.82 -0.29 7.98 16 32 H 0.04 0.56 6.36 -51.93 -0.33 0.23 16 33 H 0.10 1.57 5.93 -51.93 -0.31 1.26 16 34 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.73 7.87 -51.93 -0.41 0.32 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 1.20 8.08 -51.93 -0.42 0.78 16 40 H 0.05 0.69 6.46 -51.93 -0.34 0.36 16 LS Contribution 312.61 15.07 4.71 4.71 Total: -1.00 -30.77 312.61 -7.47 -38.24 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.49 Total: -0.96 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -0.51 Total: -20.13 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: -0.17 Total: -36.43 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 0.07 Total: -5.74 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.32 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.77 -7.47 -38.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492421.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.601 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds