Wall clock time and date at job start Mon Mar 30 2020 00:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47327 * 2 1 4 4 H 1.09002 * 109.46792 * 56.41602 * 3 2 1 5 5 C 1.50700 * 109.46725 * 176.41042 * 3 2 1 6 6 H 1.08002 * 120.00148 * 120.00482 * 5 3 2 7 7 C 1.37876 * 120.00264 * 299.72157 * 5 3 2 8 8 N 1.31518 * 120.00038 * 0.27987 * 7 5 3 9 9 Si 1.86801 * 120.00089 * 180.28019 * 7 5 3 10 10 H 1.48497 * 109.47101 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47322 * 120.00144 * 9 7 5 12 12 H 1.48508 * 109.46905 * 240.00426 * 9 7 5 13 13 N 1.46897 * 109.47200 * 296.41284 * 3 2 1 14 14 C 1.46850 * 110.99860 * 174.61720 * 13 3 2 15 15 C 1.53041 * 109.52043 * 185.83814 * 14 13 3 16 16 C 1.53119 * 109.27872 * 300.81800 * 15 14 13 17 17 F 1.39903 * 109.52122 * 297.74970 * 16 15 14 18 18 F 1.39896 * 109.57532 * 177.58988 * 16 15 14 19 19 C 1.53121 * 109.16195 * 57.65323 * 16 15 14 20 20 C 1.52995 * 109.50469 * 182.40517 * 19 16 15 21 21 C 1.53004 * 109.50245 * 62.28772 * 19 16 15 22 22 C 1.46850 * 110.99565 * 298.82234 * 13 3 2 23 23 H 1.09004 * 109.46647 * 65.07402 * 1 2 3 24 24 H 1.08994 * 109.47254 * 185.07599 * 1 2 3 25 25 H 1.09001 * 109.46966 * 305.07606 * 1 2 3 26 26 H 1.08995 * 109.47173 * 239.99594 * 2 1 3 27 27 H 1.09004 * 109.47116 * 120.00030 * 2 1 3 28 28 H 0.97003 * 119.99726 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.45686 * 305.84800 * 14 13 3 30 30 H 1.08994 * 109.46621 * 65.81880 * 14 13 3 31 31 H 1.08993 * 109.50268 * 180.87607 * 15 14 13 32 32 H 1.09003 * 109.53255 * 60.77622 * 15 14 13 33 33 H 1.08997 * 109.47364 * 179.80565 * 20 19 16 34 34 H 1.09002 * 109.46864 * 299.80781 * 20 19 16 35 35 H 1.08999 * 109.47069 * 59.80397 * 20 19 16 36 36 H 1.09002 * 109.46922 * 300.19998 * 21 19 16 37 37 H 1.09003 * 109.47014 * 60.19176 * 21 19 16 38 38 H 1.08991 * 109.46995 * 180.19757 * 21 19 16 39 39 H 1.09002 * 109.46200 * 294.17381 * 22 13 3 40 40 H 1.08999 * 109.46167 * 54.15739 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6252 1.9745 0.8562 5 6 3.5444 1.4432 0.0890 6 1 4.1317 1.8942 -0.6973 7 6 4.1710 0.8734 1.1769 8 7 3.4560 0.3242 2.1344 9 14 6.0355 0.8813 1.2909 10 1 6.6017 1.5545 0.0945 11 1 6.4536 1.6114 2.5146 12 1 6.5335 -0.5163 1.3539 13 7 1.6225 2.1095 -1.2404 14 6 1.9841 3.5326 -1.2200 15 6 1.4078 4.2245 -2.4575 16 6 1.9655 3.5550 -3.7167 17 9 3.3555 3.7095 -3.7517 18 9 1.4005 4.1466 -4.8515 19 6 1.6168 2.0642 -3.6896 20 6 2.2218 1.3758 -4.9146 21 6 0.0963 1.8948 -3.7063 22 6 2.1870 1.4350 -2.4163 23 1 -0.3633 0.4331 -0.9320 24 1 -0.3633 -1.0236 0.0909 25 1 -0.3633 0.5906 0.8410 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.8969 -0.0770 2.8997 29 1 1.5778 3.9977 -0.3218 30 1 3.0695 3.6316 -1.2209 31 1 1.6895 5.2773 -2.4501 32 1 0.3212 4.1383 -2.4504 33 1 1.9763 0.3140 -4.8930 34 1 1.8154 1.8244 -5.8211 35 1 3.3048 1.4986 -4.9026 36 1 -0.3337 2.3872 -2.8341 37 1 -0.3092 2.3432 -4.6133 38 1 -0.1513 0.8336 -3.6835 39 1 3.2715 1.5439 -2.4117 40 1 1.9280 0.3766 -2.3870 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166314.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:12:26 Heat of formation + Delta-G solvation = -113.158639 kcal Electronic energy + Delta-G solvation = -22084.120217 eV Core-core repulsion = 18761.880706 eV Total energy + Delta-G solvation = -3322.239512 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 261.160 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.64150 -46.59596 -38.72271 -35.20932 -32.98245 -31.75913 -30.15952 -27.01395 -26.62198 -25.93820 -23.82611 -22.73879 -21.25150 -19.28891 -18.69924 -16.92718 -16.81391 -16.02259 -15.55731 -15.27251 -14.61474 -14.03221 -13.80991 -13.43849 -13.03309 -13.01896 -12.91021 -12.76765 -12.55636 -12.35030 -11.99709 -11.83242 -11.66876 -11.44779 -11.20448 -11.16226 -10.97057 -10.85670 -10.80082 -10.55314 -10.23617 -9.93747 -9.81675 -9.68275 -9.39030 -9.12554 -8.40216 -7.21910 -6.02928 -4.16040 3.23912 3.33101 3.37508 4.08844 4.37382 4.42741 4.62747 4.71286 5.05116 5.18973 5.26578 5.44832 5.53510 5.73282 5.82244 5.89805 5.91226 6.04287 6.09293 6.19386 6.23468 6.34751 6.39029 6.40571 6.51303 6.57043 6.64458 6.66179 6.73967 7.04859 7.14069 7.26651 7.55502 7.71674 7.88862 8.09246 8.22587 8.39198 8.93452 9.52168 10.96446 Molecular weight = 261.16amu Principal moments of inertia in cm(-1) A = 0.022431 B = 0.007946 C = 0.006860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.970661 B = 3522.885474 C = 4080.749435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.215 3.785 4 H 0.041 0.959 5 C -0.544 4.544 6 H 0.057 0.943 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.531 5.531 14 C 0.063 3.937 15 C -0.154 4.154 16 C 0.293 3.707 17 F -0.201 7.201 18 F -0.209 7.209 19 C -0.098 4.098 20 C -0.145 4.145 21 C -0.131 4.131 22 C 0.071 3.929 23 H 0.046 0.954 24 H 0.025 0.975 25 H 0.040 0.960 26 H 0.033 0.967 27 H 0.093 0.907 28 H 0.261 0.739 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.048 0.952 38 H 0.062 0.938 39 H 0.047 0.953 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.388 3.246 -9.428 11.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C 0.109 3.891 4 H 0.059 0.941 5 C -0.583 4.583 6 H 0.076 0.924 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.255 5.255 14 C -0.066 4.066 15 C -0.193 4.193 16 C 0.257 3.743 17 F -0.182 7.182 18 F -0.190 7.190 19 C -0.099 4.099 20 C -0.203 4.203 21 C -0.188 4.188 22 C -0.058 4.058 23 H 0.065 0.935 24 H 0.044 0.956 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.111 0.889 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.862 3.141 -9.294 11.428 hybrid contribution 2.157 0.142 0.065 2.163 sum -3.704 3.283 -9.229 10.472 Atomic orbital electron populations 1.21710 0.98756 0.98428 1.00600 1.21628 0.92269 0.99070 1.02063 1.19290 0.92969 0.91070 0.85724 0.94086 1.21773 0.92712 1.37901 1.05946 0.92442 1.24889 0.97869 0.94970 0.95569 1.69881 1.34832 1.38007 1.09567 0.86646 0.86283 0.77745 0.78013 1.19869 1.21024 1.21002 1.62469 1.58212 1.00798 1.04047 1.21809 0.99145 0.90441 0.95233 1.22665 1.03132 0.99980 0.93492 1.21237 0.74572 0.94640 0.83897 1.92965 1.31713 1.96693 1.96827 1.92930 1.84981 1.86079 1.55047 1.21609 0.98727 0.91257 0.98295 1.21831 1.01216 1.00928 0.96293 1.21760 0.92402 1.02605 1.02006 1.21973 0.97587 0.98743 0.87451 0.93474 0.95622 0.94117 0.94807 0.88922 0.92931 0.90421 0.93489 0.90348 0.88557 0.91516 0.92388 0.92112 0.90505 0.93285 0.91879 0.93524 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.72 37.16 0.36 -2.26 16 2 C -0.11 -2.50 5.03 -26.73 -0.13 -2.63 16 3 C 0.22 4.98 1.75 -68.87 -0.12 4.86 16 4 H 0.04 1.06 8.07 -51.93 -0.42 0.64 16 5 C -0.54 -14.00 7.18 -34.44 -0.25 -14.25 16 6 H 0.06 1.52 5.84 -52.49 -0.31 1.21 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 8 N -0.88 -24.14 11.31 55.43 0.63 -23.51 16 9 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.53 -10.30 3.41 -228.07 -0.78 -11.08 16 14 C 0.06 1.15 5.01 -3.83 -0.02 1.13 16 15 C -0.15 -2.36 5.27 -26.65 -0.14 -2.51 16 16 C 0.29 4.76 1.30 -26.61 -0.03 4.73 16 17 F -0.20 -3.69 15.62 2.25 0.04 -3.65 16 18 F -0.21 -3.34 16.06 2.25 0.04 -3.31 16 19 C -0.10 -1.52 0.48 -154.43 -0.07 -1.59 16 20 C -0.14 -2.04 8.24 37.15 0.31 -1.73 16 21 C -0.13 -1.81 7.89 37.16 0.29 -1.51 16 22 C 0.07 1.31 3.41 -3.83 -0.01 1.30 16 23 H 0.05 0.84 7.86 -51.93 -0.41 0.43 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.74 6.13 -51.93 -0.32 0.42 16 27 H 0.09 2.35 5.99 -51.93 -0.31 2.04 16 28 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 30 H 0.05 0.97 6.72 -51.93 -0.35 0.62 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.10 1.35 6.58 -51.93 -0.34 1.01 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.76 7.88 -51.93 -0.41 0.35 16 35 H 0.06 0.89 7.75 -51.93 -0.40 0.49 16 36 H 0.08 1.11 6.01 -51.93 -0.31 0.80 16 37 H 0.05 0.62 7.76 -51.93 -0.40 0.22 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.99 6.34 -51.93 -0.33 0.66 16 40 H 0.08 1.58 5.97 -51.93 -0.31 1.27 16 LS Contribution 303.83 15.07 4.58 4.58 Total: -1.00 -26.29 303.83 -6.73 -33.02 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.29 Total: 0.81 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 0.08 Total: -12.71 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: -0.15 Total: -34.59 kcal Atomic # 9 Polarization: -7.03 SS G_CDS: 0.07 Total: -6.96 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -26.29 -6.73 -33.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166314.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.138 kcal (2) G-P(sol) polarization free energy of solvation -26.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds