Wall clock time and date at job start Mon Mar 30 2020 00:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47294 * 179.97438 * 10 9 7 12 12 N 1.28380 * 119.14370 * 269.73185 * 11 10 9 13 13 C 1.30363 * 122.49153 * 179.75137 * 12 11 10 14 14 C 1.40615 * 120.44078 * 0.51203 * 13 12 11 15 15 Cl 1.73606 * 120.86338 * 179.73396 * 14 13 12 16 16 C 1.36865 * 118.26617 * 359.75648 * 14 13 12 17 17 Cl 1.73604 * 121.11238 * 179.97438 * 16 14 13 18 18 C 1.34659 * 119.14332 * 89.99569 * 11 10 9 19 19 O 1.22087 * 120.34866 * 0.02562 * 18 11 10 20 20 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 22 22 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 23 23 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 24 24 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 25 25 H 1.08001 * 119.78064 * 180.25007 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5128 -4.9308 -0.0020 12 7 1.2042 -5.4750 1.1191 13 6 0.5497 -6.5999 1.1948 14 6 0.1591 -7.2769 0.0259 15 17 -0.7068 -8.7790 0.1139 16 6 0.4799 -6.7211 -1.1830 17 17 0.0347 -7.4942 -2.6723 18 6 1.1853 -5.4985 -1.1783 19 8 1.4960 -4.9618 -2.2299 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6246 -2.5563 -0.8919 23 1 2.8725 -3.6039 -0.8910 24 1 2.8713 -3.6047 0.8890 25 1 0.3095 -7.0167 2.1617 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078819877.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:59 Heat of formation + Delta-G solvation = -8.608047 kcal Electronic energy + Delta-G solvation = -15011.017111 eV Core-core repulsion = 12077.058809 eV Total energy + Delta-G solvation = -2933.958302 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 262.002 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.28479 -39.18520 -38.55767 -37.79320 -36.44019 -34.89353 -32.76282 -31.67787 -27.79934 -25.97950 -25.25535 -23.14279 -20.14176 -19.29698 -18.46876 -17.99238 -17.67516 -16.60773 -16.44157 -15.73122 -15.16131 -14.79152 -14.62684 -14.50760 -14.19290 -13.49480 -13.32603 -12.95686 -12.84728 -12.62723 -12.30255 -12.14572 -12.06372 -11.93899 -11.53012 -11.13283 -10.82107 -10.61781 -9.71870 -8.26147 -6.39431 -1.05320 0.28845 0.31669 0.52748 1.19157 1.42303 1.45643 1.53302 1.97265 2.39671 2.75800 3.08909 3.33568 3.53564 3.97065 4.30760 4.34750 4.39953 4.63246 4.78635 5.33229 5.40044 5.69986 6.03919 6.22333 6.74697 6.92680 7.30798 8.86372 Molecular weight = 262.00amu Principal moments of inertia in cm(-1) A = 0.037545 B = 0.004916 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.598189 B = 5694.782957 C = 6031.748795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.026 3.974 10 C 0.127 3.873 11 N -0.334 5.334 12 N -0.202 5.202 13 C 0.054 3.946 14 C 0.034 3.966 15 Cl 0.016 6.984 16 C -0.138 4.138 17 Cl 0.005 6.995 18 C 0.479 3.521 19 O -0.545 6.545 20 H 0.266 0.734 21 H 0.005 0.995 22 H -0.018 1.018 23 H 0.093 0.907 24 H 0.119 0.881 25 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.170 -18.342 3.732 18.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.797 3.203 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.582 4.582 8 H 0.093 0.907 9 C -0.012 4.012 10 C 0.008 3.992 11 N -0.154 5.154 12 N -0.025 5.025 13 C -0.136 4.136 14 C -0.001 4.001 15 Cl 0.046 6.954 16 C -0.178 4.178 17 Cl 0.034 6.966 18 C 0.276 3.724 19 O -0.424 6.424 20 H 0.074 0.926 21 H 0.024 0.976 22 H 0.000 1.000 23 H 0.111 0.889 24 H 0.137 0.863 25 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 0.518 -17.409 3.483 17.762 hybrid contribution -0.477 0.233 -1.046 1.173 sum 0.041 -17.176 2.437 17.349 Atomic orbital electron populations 1.70110 1.08078 1.28179 1.50826 1.26017 0.95761 1.03674 0.94179 0.85378 0.78146 0.77344 0.79467 1.19294 1.21052 1.18296 1.21405 0.94038 0.90968 1.51823 0.90675 1.19182 0.94307 0.92464 0.95276 1.22306 0.94672 0.77167 1.05040 1.47202 1.44863 1.21577 1.01756 1.71062 1.09513 1.10341 1.11580 1.24313 0.98930 0.90392 0.99936 1.22527 0.93693 0.91058 0.92833 1.98443 1.72342 1.26239 1.98401 1.22189 1.08069 0.96964 0.90619 1.98382 1.90191 1.77578 1.30400 1.17751 0.83025 0.86448 0.85202 1.91028 1.56105 1.65022 1.30255 0.92580 0.97630 0.99953 0.88858 0.86302 0.73324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.76 13.29 21.45 0.28 -56.47 15 2 C 0.00 0.13 5.46 84.65 0.46 0.59 15 3 Si 0.97 43.51 29.54 68.60 2.03 45.54 15 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 15 5 H -0.29 -12.58 7.11 99.48 0.71 -11.87 15 6 H -0.26 -10.82 7.11 99.48 0.71 -10.12 15 7 C -0.54 -30.24 9.11 25.60 0.23 -30.00 15 8 H 0.08 3.86 7.74 -2.91 -0.02 3.83 15 9 C 0.03 1.36 5.30 29.85 0.16 1.52 15 10 C 0.13 5.23 5.50 86.38 0.47 5.71 15 11 N -0.33 -12.39 3.22 -472.41 -1.52 -13.91 15 12 N -0.20 -6.03 10.89 -56.78 -0.62 -6.65 15 13 C 0.05 1.12 11.15 85.49 0.95 2.08 15 14 C 0.03 0.77 6.37 22.53 0.14 0.92 15 15 Cl 0.02 0.27 28.16 -2.72 -0.08 0.19 15 16 C -0.14 -4.21 6.40 22.66 0.15 -4.07 15 17 Cl 0.01 0.15 27.80 -2.72 -0.08 0.08 15 18 C 0.48 18.55 7.47 84.97 0.63 19.19 15 19 O -0.54 -25.27 16.21 -5.60 -0.09 -25.36 15 20 H 0.27 15.19 8.31 -92.71 -0.77 14.42 15 21 H 0.01 0.30 8.14 -2.39 -0.02 0.28 15 22 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 15 23 H 0.09 3.94 7.37 -2.39 -0.02 3.93 15 24 H 0.12 4.28 8.14 -2.38 -0.02 4.26 15 25 H 0.25 2.47 8.06 -2.91 -0.02 2.45 15 Total: -1.00 -69.86 263.07 4.36 -65.50 By element: Atomic # 1 Polarization: -6.07 SS G_CDS: 1.23 Total: -4.84 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 3.20 Total: -4.07 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -1.85 Total: -77.04 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.09 Total: -25.36 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 17 Polarization: 0.42 SS G_CDS: -0.15 Total: 0.27 kcal Total: -69.86 4.36 -65.50 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078819877.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.889 kcal (2) G-P(sol) polarization free energy of solvation -69.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds