Wall clock time and date at job start Mon Mar 30 2020 00:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.50270 * 2 1 4 4 C 1.53039 * 109.50209 * 239.91959 * 2 1 3 5 5 N 1.46856 * 109.51787 * 180.84076 * 4 2 1 6 6 C 1.46902 * 110.99619 * 185.84053 * 5 4 2 7 7 C 1.46846 * 111.19871 * 61.74404 * 5 4 2 8 8 C 1.53030 * 109.52435 * 298.25760 * 7 5 4 9 9 C 1.53123 * 109.50117 * 120.07749 * 2 1 3 10 10 H 1.08997 * 109.52263 * 57.73077 * 9 2 1 11 11 N 1.46502 * 109.52268 * 297.53993 * 9 2 1 12 12 S 1.65600 * 119.99814 * 144.99918 * 11 9 2 13 13 O 1.42099 * 106.40078 * 178.53892 * 12 11 9 14 14 O 1.42100 * 106.40266 * 311.46329 * 12 11 9 15 15 C 1.76202 * 107.21773 * 65.00027 * 12 11 9 16 16 H 1.08006 * 119.99947 * 359.97438 * 15 12 11 17 17 C 1.37877 * 119.99939 * 179.97438 * 15 12 11 18 18 N 1.31516 * 120.00156 * 0.02562 * 17 15 12 19 19 Si 1.86806 * 119.99975 * 179.97438 * 17 15 12 20 20 H 1.48502 * 109.46979 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46933 * 120.00494 * 19 17 15 22 22 H 1.48494 * 109.47089 * 240.00586 * 19 17 15 23 23 H 1.09003 * 109.47116 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47415 * 300.00340 * 1 2 3 25 25 H 1.09000 * 109.47041 * 60.00201 * 1 2 3 26 26 H 1.09000 * 109.46148 * 300.85528 * 4 2 1 27 27 H 1.09002 * 109.46208 * 60.83238 * 4 2 1 28 28 H 1.09000 * 109.47170 * 59.99990 * 6 5 4 29 29 H 1.09003 * 109.47055 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.46954 * 300.00161 * 6 5 4 31 31 H 1.09004 * 109.46012 * 58.27074 * 7 5 4 32 32 H 1.08994 * 109.46057 * 178.23653 * 7 5 4 33 33 H 1.08997 * 109.50569 * 179.12357 * 8 7 5 34 34 H 1.09007 * 109.50504 * 299.19535 * 8 7 5 35 35 H 0.96998 * 119.99946 * 324.99988 * 11 9 2 36 36 H 0.96997 * 120.00209 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7231 -1.2483 5 7 3.5093 -0.7409 -1.2385 6 6 4.0373 -1.3042 -2.4883 7 6 4.0238 -1.4716 -0.0733 8 6 3.5720 -0.7710 1.2100 9 6 2.0412 -0.7234 1.2490 10 1 1.6458 -1.7389 1.2693 11 7 1.6028 -0.0020 2.4464 12 16 1.2082 -0.8394 3.8195 13 8 0.8622 0.1324 4.7967 14 8 0.3312 -1.8820 3.4156 15 6 2.6790 -1.6213 4.3943 16 1 3.6049 -1.4946 3.8529 17 6 2.6478 -2.3947 5.5353 18 7 1.5202 -2.5493 6.1943 19 14 4.2068 -3.2242 6.1443 20 1 5.3313 -2.8955 5.2317 21 1 4.5227 -2.7407 7.5125 22 1 4.0060 -4.6952 6.1732 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6653 -1.7463 -1.2546 27 1 1.6900 -0.2019 -2.1390 28 1 3.7006 -0.6992 -3.3303 29 1 5.1268 -1.3060 -2.4544 30 1 3.6761 -2.3257 -2.6075 31 1 3.6388 -2.4913 -0.0852 32 1 5.1128 -1.4942 -0.1107 33 1 3.9409 -1.3223 2.0749 34 1 3.9686 0.2442 1.2295 35 1 1.5437 0.9661 2.4349 36 1 1.4981 -3.0937 6.9968 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252725708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:10:22 Heat of formation + Delta-G solvation = -100.866356 kcal Electronic energy + Delta-G solvation = -19103.410038 eV Core-core repulsion = 16134.284941 eV Total energy + Delta-G solvation = -2969.125097 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.19915 -35.37063 -35.00465 -33.90621 -33.07780 -32.28394 -30.47397 -26.79909 -26.15070 -25.43894 -22.47908 -21.42044 -19.78137 -18.85436 -17.33401 -16.28128 -15.92717 -15.20014 -14.99434 -14.71177 -14.42128 -14.14063 -13.79956 -13.43168 -12.95216 -12.54288 -12.37397 -12.30702 -11.99663 -11.75672 -11.58139 -11.23312 -11.16483 -10.98218 -10.72820 -10.64839 -10.56610 -10.37860 -10.24653 -10.13181 -9.81789 -9.24298 -8.89291 -8.45180 -8.29381 -6.68445 -5.29536 2.39650 3.05735 3.14426 3.20918 3.97183 4.07283 4.65376 4.70130 4.92483 5.01563 5.11573 5.27289 5.42090 5.46154 5.55305 5.64078 5.73064 5.78528 5.79664 5.85927 5.88464 5.97056 6.12099 6.16459 6.27489 6.37689 6.51206 6.53272 6.71615 6.98021 7.11067 7.13967 7.36225 7.97103 8.03339 8.91333 10.25789 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.023701 B = 0.007548 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.102451 B = 3708.773352 C = 4578.721226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.081 0.919 4 C 0.062 3.938 5 N -0.545 5.545 6 C 0.026 3.974 7 C 0.056 3.944 8 C -0.142 4.142 9 C 0.164 3.836 10 H 0.087 0.913 11 N -1.130 6.130 12 S 2.714 3.286 13 O -1.009 7.009 14 O -1.008 7.008 15 C -1.020 5.020 16 H 0.106 0.894 17 C 0.133 3.867 18 N -0.846 5.846 19 Si 0.918 3.082 20 H -0.262 1.262 21 H -0.271 1.271 22 H -0.272 1.272 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.036 0.964 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.023 0.977 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.401 0.599 36 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.379 2.358 -13.913 14.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 H 0.099 0.901 4 C -0.066 4.066 5 N -0.270 5.270 6 C -0.123 4.123 7 C -0.072 4.072 8 C -0.181 4.181 9 C 0.055 3.945 10 H 0.105 0.895 11 N -0.882 5.882 12 S 2.814 3.186 13 O -1.000 7.000 14 O -0.998 6.998 15 C -1.153 5.153 16 H 0.124 0.876 17 C -0.085 4.085 18 N -0.476 5.476 19 Si 0.742 3.258 20 H -0.186 1.186 21 H -0.196 1.196 22 H -0.197 1.197 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.232 0.768 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.544 2.529 -13.346 14.038 hybrid contribution 1.194 -1.027 0.263 1.597 sum 4.738 1.502 -13.083 13.995 Atomic orbital electron populations 1.21784 0.94578 1.02449 1.01623 1.21427 0.95763 1.00438 0.93573 0.90087 1.22142 0.86968 0.99240 0.98275 1.61957 1.08260 1.54296 1.02474 1.22331 1.00417 0.97455 0.92066 1.22112 0.99748 0.95281 0.90060 1.22302 0.96553 1.02193 0.97050 1.20628 0.93180 0.96153 0.84505 0.89473 1.55992 1.86090 1.17949 1.28173 1.00409 0.75573 0.72574 0.70081 1.93370 1.85401 1.63028 1.58183 1.93354 1.66652 1.57401 1.82381 1.30696 1.17330 1.46123 1.21145 0.87617 1.24742 0.97752 0.92371 0.93613 1.69909 1.26420 1.34383 1.16860 0.86175 0.81551 0.79014 0.79082 1.18568 1.19650 1.19691 0.92326 0.91862 0.93016 0.94551 0.90780 0.91627 0.91537 0.95812 0.94537 0.90725 0.89446 0.90817 0.76812 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.06 37.16 0.34 -1.67 16 2 C -0.09 -1.28 2.50 -90.54 -0.23 -1.51 16 3 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.06 0.77 4.75 -3.83 -0.02 0.75 16 5 N -0.55 -6.82 4.91 -242.95 -1.19 -8.01 16 6 C 0.03 0.25 9.59 60.07 0.58 0.83 16 7 C 0.06 0.76 5.46 -3.84 -0.02 0.74 16 8 C -0.14 -2.24 5.71 -26.61 -0.15 -2.39 16 9 C 0.16 2.82 2.28 -67.76 -0.15 2.67 16 10 H 0.09 1.67 7.51 -51.93 -0.39 1.28 16 11 N -1.13 -22.14 4.83 -4.75 -0.02 -22.16 16 12 S 2.71 71.42 5.00 -107.50 -0.54 70.88 16 13 O -1.01 -29.70 18.02 -57.17 -1.03 -30.73 16 14 O -1.01 -29.21 17.36 -57.17 -0.99 -30.20 16 15 C -1.02 -27.56 9.60 30.60 0.29 -27.27 16 16 H 0.11 2.58 5.70 -52.48 -0.30 2.28 16 17 C 0.13 3.69 5.46 -17.82 -0.10 3.59 16 18 N -0.85 -24.89 13.19 55.43 0.73 -24.16 16 19 Si 0.92 20.44 29.54 -169.99 -5.02 15.42 16 20 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.06 0.93 7.68 -51.93 -0.40 0.53 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.80 8.12 -51.93 -0.42 0.37 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 33 H 0.09 1.52 5.87 -51.93 -0.30 1.22 16 34 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 35 H 0.40 6.86 8.84 -34.47 -0.30 6.55 16 36 H 0.29 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 301.93 15.07 4.55 4.55 Total: -1.00 -34.09 301.93 -8.46 -42.54 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.48 Total: 6.13 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: 0.54 Total: -24.26 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: -0.48 Total: -54.33 kcal Atomic # 8 Polarization: -58.90 SS G_CDS: -2.02 Total: -60.93 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 71.42 SS G_CDS: -0.54 Total: 70.88 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.09 -8.46 -42.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252725708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.323 kcal (2) G-P(sol) polarization free energy of solvation -34.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds