Wall clock time and date at job start Mon Mar 30 2020 00:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99824 * 2 1 4 4 C 1.53006 * 109.46752 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47070 * 64.99887 * 4 3 2 6 6 C 1.46502 * 119.99978 * 90.00127 * 5 4 3 7 7 C 1.50699 * 109.47155 * 89.99983 * 6 5 4 8 8 H 1.07990 * 120.00240 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99650 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00416 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99798 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47113 * 59.99521 * 11 9 7 13 13 H 1.48503 * 109.46960 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47225 * 299.99509 * 11 9 7 15 15 C 1.38537 * 120.00204 * 269.99642 * 5 4 3 16 16 C 1.39708 * 120.49886 * 4.99998 * 15 5 4 17 17 C 1.39258 * 118.18752 * 179.97438 * 16 15 5 18 18 C 1.43192 * 120.51936 * 180.02562 * 17 16 15 19 19 N 5.12212 * 109.71418 * 161.94702 * 2 1 3 20 20 N 1.33452 * 118.95576 * 0.02562 * 17 16 15 21 21 C 1.31542 * 120.90311 * 0.02562 * 20 17 16 22 22 N 1.31858 * 122.01236 * 359.73303 * 21 20 17 23 23 H 1.09008 * 109.46688 * 300.00244 * 1 2 3 24 24 H 1.09002 * 109.47367 * 59.99723 * 1 2 3 25 25 H 1.08993 * 109.47444 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47732 * 60.00254 * 3 2 1 27 27 H 1.09000 * 109.47141 * 299.99893 * 3 2 1 28 28 H 1.09004 * 109.46579 * 184.99441 * 4 3 2 29 29 H 1.08992 * 109.47046 * 304.99625 * 4 3 2 30 30 H 1.09007 * 109.47120 * 209.99665 * 6 5 4 31 31 H 1.09002 * 109.47467 * 329.99439 * 6 5 4 32 32 H 0.96998 * 120.00322 * 180.02562 * 10 9 7 33 33 H 1.08002 * 120.90036 * 359.96078 * 16 15 5 34 34 H 1.08005 * 118.99407 * 180.02562 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.2864 1.4006 -2.4148 7 6 5.7442 1.7810 -2.3846 8 1 6.3760 1.4349 -1.5801 9 6 6.2712 2.5718 -3.3836 10 7 5.5017 2.9937 -4.3631 11 14 8.0782 3.0438 -3.3458 12 1 8.9116 1.8154 -3.3833 13 1 8.3931 3.8914 -4.5238 14 1 8.3664 3.7997 -2.1004 15 6 4.0982 -0.8129 -1.3378 16 6 3.7062 -1.6268 -0.2721 17 6 3.8500 -3.0051 -0.4096 18 6 3.4637 -3.8860 0.6512 19 7 3.1568 -4.5845 1.4943 20 7 4.3534 -3.4921 -1.5456 21 6 4.7111 -2.6898 -2.5246 22 7 4.5869 -1.3801 -2.4359 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6887 1.8465 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.9785 2.1766 0.0888 29 1 3.8514 0.5683 0.8409 30 1 4.0745 0.8457 -3.3288 31 1 3.6749 2.3026 -2.3874 32 1 5.8725 3.5497 -5.0661 33 1 3.3030 -1.1987 0.6337 34 1 5.1147 -3.1171 -3.4308 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383441233.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:16 Heat of formation + Delta-G solvation = 49.105987 kcal Electronic energy + Delta-G solvation = -19386.335212 eV Core-core repulsion = 16320.562203 eV Total energy + Delta-G solvation = -3065.773009 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.117 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.53340 -38.12819 -36.70150 -36.13325 -32.90902 -32.81796 -31.16587 -29.70281 -27.10224 -26.20373 -24.82185 -23.83933 -22.77417 -21.34491 -18.74346 -17.24741 -16.54678 -16.36769 -16.28795 -15.44800 -15.00048 -14.88106 -14.67736 -14.53911 -14.14774 -13.65272 -13.24846 -12.92308 -12.73079 -12.63348 -12.39371 -12.00287 -11.77644 -11.29789 -11.22878 -10.94857 -10.68386 -10.58903 -10.28068 -10.10026 -9.67845 -9.59443 -9.33720 -8.72753 -8.50263 -7.27051 -6.11008 -4.17161 0.95442 1.73394 2.60633 3.19633 3.27066 3.32329 3.33921 3.43479 3.73805 3.86539 4.36530 4.43891 4.79492 5.05294 5.15417 5.21364 5.22641 5.29572 5.35241 5.43227 5.48858 5.64730 5.70056 5.82036 5.89207 6.01597 6.51099 6.84522 7.16672 7.27184 7.36835 7.46074 7.74077 7.93606 8.02937 8.13071 8.74662 8.87607 9.47901 10.95499 Molecular weight = 262.12amu Principal moments of inertia in cm(-1) A = 0.018315 B = 0.006532 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.421660 B = 4285.448905 C = 5269.752410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.383 6.383 3 C 0.039 3.961 4 C 0.122 3.878 5 N -0.564 5.564 6 C 0.252 3.748 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.065 3.935 10 N -0.894 5.894 11 Si 0.897 3.103 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.278 1.278 15 C 0.459 3.541 16 C -0.225 4.225 17 C 0.245 3.755 18 C 0.284 3.716 19 N -0.406 5.406 20 N -0.557 5.557 21 C 0.340 3.660 22 N -0.541 5.541 23 H 0.037 0.963 24 H 0.039 0.961 25 H 0.081 0.919 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.031 0.969 32 H 0.264 0.736 33 H 0.149 0.851 34 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.980 -3.236 7.089 10.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C -0.039 4.039 4 C -0.002 4.002 5 N -0.271 5.271 6 C 0.133 3.867 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.138 4.138 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.204 1.204 15 C 0.212 3.788 16 C -0.258 4.258 17 C 0.103 3.897 18 C -0.034 4.034 19 N -0.083 5.083 20 N -0.280 5.280 21 C 0.049 3.951 22 N -0.264 5.264 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.099 0.901 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.124 0.876 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.166 0.834 34 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -6.998 -4.469 7.385 11.112 hybrid contribution 0.575 1.260 0.248 1.407 sum -6.423 -3.209 7.633 10.479 Atomic orbital electron populations 1.22685 0.81669 1.02370 0.99651 1.87958 1.19198 1.27703 1.95358 1.23201 0.94889 0.85139 1.00714 1.21597 0.91420 1.00363 0.86828 1.47125 1.64701 1.01261 1.14034 1.19416 0.95919 0.88944 0.82416 1.21341 0.94609 1.31176 1.09314 0.92520 1.24885 0.97968 0.95809 0.95090 1.69906 1.35740 1.35523 1.12088 0.86587 0.85125 0.78485 0.77370 1.20156 1.21229 1.20364 1.18372 0.86227 0.86312 0.87881 1.22075 1.08651 0.92588 1.02506 1.16142 0.96246 0.88001 0.89308 1.25079 0.93492 0.92322 0.92469 1.81223 1.08130 1.08355 1.10583 1.68245 1.17771 1.40894 1.01073 1.24579 0.90495 0.84407 0.95624 1.68127 1.19301 1.13250 1.25747 0.94437 0.94208 0.90059 0.92589 0.92429 0.87646 0.90471 0.93117 0.95085 0.92610 0.83353 0.78676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.38 -5.18 8.07 -35.23 -0.28 -5.46 16 3 C 0.04 0.49 6.28 37.16 0.23 0.72 16 4 C 0.12 1.77 5.71 -4.04 -0.02 1.75 16 5 N -0.56 -10.66 2.54 -175.03 -0.44 -11.11 16 6 C 0.25 5.84 5.16 -5.19 -0.03 5.81 16 7 C -0.53 -13.51 9.39 -34.44 -0.32 -13.83 16 8 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -24.75 13.29 55.43 0.74 -24.02 16 11 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 C 0.46 8.57 7.19 -154.83 -1.11 7.46 16 16 C -0.23 -3.61 7.76 -38.65 -0.30 -3.91 16 17 C 0.25 3.94 6.61 -84.86 -0.56 3.38 16 18 C 0.28 4.41 15.60 -22.44 -0.35 4.06 16 19 N -0.41 -6.58 18.54 41.88 0.78 -5.80 16 20 N -0.56 -9.22 10.38 -12.63 -0.13 -9.36 16 21 C 0.34 5.62 12.27 -92.32 -1.13 4.48 16 22 N -0.54 -10.64 9.30 -13.84 -0.13 -10.77 16 23 H 0.04 0.33 8.14 -51.92 -0.42 -0.09 16 24 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.11 1.48 8.07 -51.93 -0.42 1.06 16 29 H 0.08 0.99 6.44 -51.93 -0.33 0.66 16 30 H 0.05 1.32 7.48 -51.92 -0.39 0.93 16 31 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.15 2.13 5.39 -52.49 -0.28 1.85 16 34 H 0.20 2.54 8.06 -52.48 -0.42 2.12 16 LS Contribution 305.73 15.07 4.61 4.61 Total: -1.00 -29.50 305.73 -6.39 -35.89 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -3.93 Total: -2.59 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: -2.58 Total: 13.00 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 0.81 Total: -61.05 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.28 Total: -5.46 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.50 -6.39 -35.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383441233.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.000 kcal (2) G-P(sol) polarization free energy of solvation -29.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds