Wall clock time and date at job start Sun Mar 29 2020 23:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00034 * 2 1 4 4 H 1.48495 * 109.47204 * 239.99905 * 3 2 1 5 5 H 1.48495 * 109.47152 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46881 * 120.00227 * 3 2 1 7 7 C 1.38812 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00515 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99988 * 0.02562 * 7 2 1 10 10 C 1.47871 * 126.94414 * 359.97438 * 9 7 2 11 11 C 1.56019 * 105.10436 * 182.00617 * 10 9 7 12 12 H 1.09002 * 116.24915 * 158.83782 * 11 10 9 13 13 C 1.57086 * 99.60505 * 32.81049 * 11 10 9 14 14 C 1.49284 * 126.94475 * 180.02562 * 9 7 2 15 15 H 1.09001 * 116.79074 * 16.29878 * 14 9 7 16 16 C 1.56022 * 104.08997 * 246.69350 * 14 9 7 17 17 N 1.49071 * 105.20719 * 288.09353 * 16 14 9 18 18 C 1.34770 * 127.54683 * 182.03192 * 17 16 14 19 19 O 1.21271 * 120.00281 * 181.19539 * 18 17 16 20 20 C 1.50706 * 119.99645 * 1.19513 * 18 17 16 21 21 C 1.54632 * 111.04046 * 295.33286 * 20 18 17 22 22 C 1.51163 * 104.69543 * 217.36265 * 21 20 18 23 23 C 1.30524 * 111.11943 * 16.38592 * 22 21 20 24 24 C 1.51103 * 111.10602 * 0.02725 * 23 22 21 25 25 H 0.96998 * 120.00001 * 0.02562 * 1 2 3 26 26 H 1.09004 * 110.31012 * 63.09966 * 10 9 7 27 27 H 1.09006 * 110.31821 * 300.91540 * 10 9 7 28 28 H 1.08994 * 112.37121 * 64.27209 * 13 11 10 29 29 H 1.09002 * 112.36511 * 191.71430 * 13 11 10 30 30 H 1.08993 * 110.31538 * 47.67090 * 16 14 9 31 31 H 1.08998 * 110.31603 * 169.76242 * 16 14 9 32 32 H 1.09003 * 110.91271 * 59.30630 * 20 18 17 33 33 H 1.09004 * 110.38699 * 336.14929 * 21 20 18 34 34 H 1.08997 * 110.38590 * 98.52061 * 21 20 18 35 35 H 1.07996 * 124.43094 * 196.39991 * 22 21 20 36 36 H 1.08004 * 124.45060 * 180.02562 * 23 22 21 37 37 H 1.09002 * 110.38876 * 224.75713 * 24 23 22 38 38 H 1.09002 * 110.38559 * 102.38100 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1423 -2.5669 -0.0018 11 6 -0.3639 -4.1104 0.0496 12 1 -1.3363 -4.4461 0.4100 13 6 0.8839 -4.5259 0.9087 14 6 1.9102 -3.7617 -0.0018 15 1 2.9617 -3.8482 0.2721 16 6 1.5091 -4.3450 -1.3921 17 7 0.0434 -4.6014 -1.3006 18 6 -0.7562 -5.1414 -2.2414 19 8 -1.9432 -5.2688 -2.0281 20 6 -0.1753 -5.5871 -3.5586 21 6 0.3826 -4.3845 -4.3546 22 6 0.0487 -4.6911 -5.7967 23 6 -0.8591 -5.6251 -5.8809 24 6 -1.2829 -6.0973 -4.5095 25 1 -0.4850 0.8400 -0.0004 26 1 -0.5738 -2.1527 -0.9130 27 1 -0.5815 -2.0921 0.8757 28 1 0.8450 -4.1206 1.9197 29 1 1.0490 -5.6033 0.9062 30 1 1.7283 -3.6262 -2.1816 31 1 2.0364 -5.2810 -1.5762 32 1 0.5918 -6.3468 -3.4084 33 1 -0.1049 -3.4618 -4.0400 34 1 1.4618 -4.3091 -4.2218 35 1 0.5021 -4.2015 -6.6459 36 1 -1.2554 -6.0101 -6.8090 37 1 -1.3353 -7.1857 -4.4820 38 1 -2.2453 -5.6629 -4.2391 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032325708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:46:58 Heat of formation + Delta-G solvation = 41.261497 kcal Electronic energy + Delta-G solvation = -20453.375716 eV Core-core repulsion = 17490.802888 eV Total energy + Delta-G solvation = -2962.572828 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.24972 -38.71663 -36.88570 -33.60160 -31.63425 -29.71824 -28.69416 -28.44633 -27.93664 -25.22436 -23.78885 -21.99293 -20.09899 -19.71908 -18.72763 -18.33692 -17.26596 -16.39075 -16.05114 -15.69150 -14.87634 -14.52409 -14.05393 -13.42799 -13.14095 -12.73694 -12.60284 -12.14489 -12.03737 -11.89504 -11.73505 -11.48782 -11.28999 -11.21889 -10.99166 -10.97124 -10.85181 -10.73760 -10.58075 -10.25877 -10.09657 -9.64290 -9.35504 -8.84035 -8.71003 -7.99296 -6.94094 -5.77721 -3.12491 2.29304 3.05669 3.36453 3.40092 3.40863 3.43027 4.40841 4.57524 4.67760 4.89317 5.11215 5.19176 5.26209 5.32789 5.38411 5.55743 5.63473 5.66033 5.75164 5.78095 5.86395 5.92154 5.98990 6.01516 6.21520 6.24743 6.31243 6.42143 6.50565 6.53714 6.59207 6.70483 6.91511 7.41269 7.48267 7.70656 8.08161 8.13099 8.62249 9.09067 9.70025 10.39265 11.34262 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022706 B = 0.006282 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.881231 B = 4456.146950 C = 5023.848205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.233 4.233 8 H 0.080 0.920 9 N -0.596 5.596 10 C 0.175 3.825 11 C 0.096 3.904 12 H 0.111 0.889 13 C -0.152 4.152 14 C 0.140 3.860 15 H 0.106 0.894 16 C 0.085 3.915 17 N -0.606 5.606 18 C 0.537 3.463 19 O -0.556 6.556 20 C -0.109 4.109 21 C -0.089 4.089 22 C -0.164 4.164 23 C -0.168 4.168 24 C -0.085 4.085 25 H 0.255 0.745 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.070 0.930 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.651 -11.428 -6.277 13.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.361 4.361 8 H 0.098 0.902 9 N -0.321 5.321 10 C 0.050 3.950 11 C -0.006 4.006 12 H 0.129 0.871 13 C -0.191 4.191 14 C 0.031 3.969 15 H 0.124 0.876 16 C -0.040 4.040 17 N -0.340 5.340 18 C 0.326 3.674 19 O -0.435 6.435 20 C -0.130 4.130 21 C -0.126 4.126 22 C -0.182 4.182 23 C -0.186 4.186 24 C -0.123 4.123 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.117 0.883 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.089 0.911 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.914 -11.232 -6.223 12.983 hybrid contribution 0.488 0.991 -0.183 1.120 sum 2.402 -10.241 -6.407 12.317 Atomic orbital electron populations 1.69907 1.04952 1.25452 1.56285 1.24819 0.95671 0.97711 1.02015 0.86199 0.78448 0.83191 0.77884 1.21168 1.21626 1.21101 1.18997 0.90361 0.82086 1.44607 0.90211 1.45220 1.01320 0.99229 1.86299 1.21905 0.84625 0.87166 1.01279 1.24314 0.97719 0.97535 0.81076 0.87091 1.24157 0.96915 0.98854 0.99220 1.23157 0.96521 0.86333 0.90900 0.87593 1.23558 0.79579 0.98813 1.02060 1.49476 1.09622 1.59246 1.15618 1.19867 0.85847 0.77276 0.84445 1.90640 1.15423 1.57497 1.79971 1.22077 0.99168 0.99057 0.92744 1.21337 1.01514 0.97834 0.91945 1.23267 0.99139 0.98445 0.97390 1.23279 0.98400 0.98960 0.98000 1.21264 0.99283 1.00772 0.90956 0.93515 0.93536 0.92631 0.89859 0.91707 0.90730 0.92939 0.88310 0.89904 0.90388 0.85760 0.85840 0.91110 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.68 10.56 55.49 0.59 -26.10 16 2 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 3 Si 0.91 21.55 29.55 -169.99 -5.02 16.52 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.23 -6.11 10.38 -15.06 -0.16 -6.27 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.60 -14.15 3.02 -156.36 -0.47 -14.62 16 10 C 0.18 4.20 4.78 -1.67 -0.01 4.19 16 11 C 0.10 1.88 5.19 -62.53 -0.32 1.55 16 12 H 0.11 2.13 8.06 -51.93 -0.42 1.71 16 13 C -0.15 -2.56 6.80 -22.33 -0.15 -2.71 16 14 C 0.14 2.55 5.52 -62.58 -0.35 2.20 16 15 H 0.11 1.72 8.14 -51.93 -0.42 1.29 16 16 C 0.08 1.42 5.61 -1.00 -0.01 1.41 16 17 N -0.61 -11.15 3.01 -155.78 -0.47 -11.62 16 18 C 0.54 9.89 7.17 -10.99 -0.08 9.82 16 19 O -0.56 -11.97 15.89 5.57 0.09 -11.88 16 20 C -0.11 -1.58 3.06 -90.05 -0.28 -1.86 16 21 C -0.09 -1.26 5.26 -26.80 -0.14 -1.40 16 22 C -0.16 -2.01 10.78 -35.67 -0.38 -2.40 16 23 C -0.17 -1.99 10.77 -35.70 -0.38 -2.38 16 24 C -0.09 -1.15 6.16 -26.83 -0.17 -1.32 16 25 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.05 1.29 7.68 -51.93 -0.40 0.89 16 27 H 0.06 1.47 7.46 -51.93 -0.39 1.08 16 28 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.35 6.94 -51.93 -0.36 0.99 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.08 1.40 7.88 -51.93 -0.41 0.99 16 34 H 0.08 1.01 7.47 -51.93 -0.39 0.62 16 35 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 1.46 7.01 -51.93 -0.36 1.10 16 LS Contribution 303.93 15.07 4.58 4.58 Total: -1.00 -30.79 303.93 -8.88 -39.67 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.65 Total: 2.85 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -2.52 Total: 0.60 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.36 Total: -52.34 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.79 -8.88 -39.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032325708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.935 kcal (2) G-P(sol) polarization free energy of solvation -30.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds