Wall clock time and date at job start Sun Mar 29 2020 23:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47360 * 2 1 4 4 H 1.09003 * 109.46970 * 54.99963 * 3 2 1 5 5 C 1.53003 * 109.47250 * 295.00671 * 3 2 1 6 6 C 1.52999 * 109.47666 * 175.00234 * 3 2 1 7 7 C 1.50700 * 109.47443 * 184.99974 * 6 3 2 8 8 O 1.21272 * 119.99703 * 0.02562 * 7 6 3 9 9 N 1.34772 * 119.99922 * 179.97438 * 7 6 3 10 10 C 1.39264 * 119.99844 * 174.84535 * 9 7 6 11 11 C 1.39678 * 119.57612 * 185.71642 * 10 9 7 12 12 C 1.38655 * 119.49479 * 180.02562 * 11 10 9 13 13 C 1.38342 * 118.67110 * 359.97438 * 12 11 10 14 14 C 1.40578 * 119.13261 * 359.97438 * 13 12 11 15 15 C 1.41329 * 119.79053 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99841 * 5.70273 * 15 14 13 17 17 C 1.40024 * 120.00382 * 185.69771 * 15 14 13 18 18 N 1.30746 * 119.99864 * 354.92503 * 17 15 14 19 19 Si 1.86798 * 120.00381 * 174.91953 * 17 15 14 20 20 H 1.48504 * 109.47143 * 94.99779 * 19 17 15 21 21 H 1.48504 * 109.47460 * 215.00153 * 19 17 15 22 22 H 1.48503 * 109.47137 * 335.00228 * 19 17 15 23 23 N 1.31907 * 119.57612 * 5.44266 * 10 9 7 24 24 H 1.09003 * 109.46628 * 299.99944 * 1 2 3 25 25 H 1.09001 * 109.47242 * 59.99549 * 1 2 3 26 26 H 1.09001 * 109.46824 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47331 * 240.00312 * 2 1 3 28 28 H 1.08998 * 109.47482 * 119.99978 * 2 1 3 29 29 H 1.08994 * 109.47222 * 59.99307 * 5 3 2 30 30 H 1.08991 * 109.47574 * 180.02562 * 5 3 2 31 31 H 1.09003 * 109.46556 * 299.99545 * 5 3 2 32 32 H 1.09003 * 109.46882 * 64.99808 * 6 3 2 33 33 H 1.09004 * 109.46786 * 305.00543 * 6 3 2 34 34 H 0.97002 * 120.00074 * 354.85010 * 9 7 6 35 35 H 1.07994 * 120.25132 * 359.97438 * 11 10 9 36 36 H 1.08003 * 120.66059 * 180.02562 * 12 11 10 37 37 H 1.08007 * 120.43429 * 179.97438 * 13 12 11 38 38 H 0.97002 * 119.99932 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5649 1.4444 0.1257 7 6 4.0570 2.8634 0.2492 8 8 3.2660 3.7826 0.2383 9 7 5.3761 3.1108 0.3728 10 6 5.8407 4.4236 0.3789 11 6 7.2159 4.6682 0.3865 12 6 7.6766 5.9759 0.3931 13 6 6.7524 7.0053 0.3914 14 6 5.3815 6.6942 0.3825 15 6 4.4253 7.7349 0.3812 16 1 4.7458 8.7626 0.2941 17 6 3.0624 7.4336 0.4928 18 7 2.6666 6.1875 0.4983 19 14 1.8096 8.8120 0.6341 20 1 1.2668 9.1275 -0.7118 21 1 0.7023 8.3851 1.5268 22 1 2.4637 10.0194 1.1994 23 7 4.9765 5.4201 0.3719 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 0.5489 2.1253 -1.3968 30 1 1.9989 3.1541 -1.3075 31 1 2.0698 1.5876 -2.1491 32 1 4.0029 0.9836 -0.7597 33 1 3.8571 0.8800 1.0112 34 1 6.0018 2.3744 0.4574 35 1 7.9149 3.8450 0.3880 36 1 8.7359 6.1867 0.3986 37 1 7.0798 8.0346 0.3969 38 1 1.7225 5.9788 0.5752 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882472928.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:00 Heat of formation + Delta-G solvation = -0.526186 kcal Electronic energy + Delta-G solvation = -19908.794931 eV Core-core repulsion = 16944.410054 eV Total energy + Delta-G solvation = -2964.384878 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.36873 -37.74338 -35.95391 -34.00549 -32.94815 -30.65260 -30.22224 -29.06244 -27.17499 -25.46880 -23.95231 -21.89384 -21.13218 -19.79205 -19.05031 -17.65702 -16.09600 -15.99092 -15.15218 -14.72694 -14.49566 -14.40425 -14.01030 -13.62400 -13.39193 -12.94004 -12.76797 -12.25390 -12.08670 -11.95045 -11.64421 -11.49351 -11.19031 -11.04573 -10.92146 -10.63821 -10.50881 -10.45062 -10.38091 -10.34854 -9.91436 -9.57368 -8.96634 -8.77968 -7.93246 -7.15536 -6.91275 -6.11929 -4.37061 2.81416 3.10212 3.18772 3.21111 3.29039 3.82602 3.94213 4.08356 4.94138 4.98883 5.03849 5.09227 5.45033 5.48026 5.64973 5.81546 5.86060 5.89724 5.97571 6.07329 6.08141 6.14886 6.18195 6.26223 6.41544 6.52404 6.67139 6.73857 6.87097 6.87798 6.93154 7.28057 7.59235 7.67209 7.84109 8.12025 8.24220 8.52437 8.78387 9.08249 9.36646 10.28188 10.50677 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.016267 B = 0.007232 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.878633 B = 3870.889754 C = 5456.405215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.073 4.073 4 H 0.078 0.922 5 C -0.153 4.153 6 C -0.135 4.135 7 C 0.467 3.533 8 O -0.406 6.406 9 N -0.670 5.670 10 C 0.372 3.628 11 C -0.358 4.358 12 C -0.037 4.037 13 C -0.306 4.306 14 C 0.271 3.729 15 C -0.427 4.427 16 H 0.081 0.919 17 C 0.059 3.941 18 N -0.655 5.655 19 Si 0.894 3.106 20 H -0.272 1.272 21 H -0.278 1.278 22 H -0.263 1.263 23 N -0.472 5.472 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.397 0.603 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.864 -10.899 -0.781 11.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.092 4.092 4 H 0.096 0.904 5 C -0.210 4.210 6 C -0.176 4.176 7 C 0.249 3.751 8 O -0.270 6.270 9 N -0.317 5.317 10 C 0.133 3.867 11 C -0.384 4.384 12 C -0.061 4.061 13 C -0.330 4.330 14 C 0.146 3.854 15 C -0.457 4.457 16 H 0.100 0.900 17 C -0.170 4.170 18 N -0.274 5.274 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.203 1.203 22 H -0.187 1.187 23 N -0.191 5.191 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.230 0.770 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.655 -10.543 -0.813 11.188 hybrid contribution 0.903 0.236 0.136 0.943 sum -2.752 -10.306 -0.677 10.689 Atomic orbital electron populations 1.21802 0.96046 1.00942 1.02172 1.21590 0.95907 0.96725 1.01400 1.20868 0.93150 0.95170 1.00039 0.90364 1.21987 1.00499 1.03064 0.95454 1.21770 0.97440 0.95493 1.02896 1.20819 0.82932 0.91415 0.79920 1.91094 1.52293 1.43852 1.39713 1.43521 1.08349 1.06221 1.73622 1.18674 0.88827 0.85586 0.93633 1.20514 0.93406 0.96424 1.28045 1.20559 0.97138 0.92580 0.95849 1.21626 0.94705 0.97390 1.19238 1.18396 0.89692 0.89491 0.87825 1.19563 0.90412 0.93396 1.42356 0.90037 1.26159 0.99543 0.96020 0.95305 1.70331 1.16212 1.16760 1.24052 0.86528 0.80574 0.82248 0.78772 1.19767 1.20301 1.18730 1.68723 1.32511 0.97653 1.20258 0.92762 0.92405 0.93302 0.92322 0.92382 0.93311 0.89729 0.94059 0.90052 0.90153 0.76957 0.89185 0.88717 0.88639 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.67 37.16 0.36 -1.23 16 2 C -0.12 -1.30 5.40 -26.73 -0.14 -1.45 16 3 C -0.07 -1.03 2.04 -90.62 -0.18 -1.22 16 4 H 0.08 1.26 7.95 -51.93 -0.41 0.85 16 5 C -0.15 -2.34 8.69 37.16 0.32 -2.02 16 6 C -0.14 -1.90 5.18 -27.88 -0.14 -2.04 16 7 C 0.47 9.23 7.50 -10.99 -0.08 9.15 16 8 O -0.41 -9.84 9.80 5.56 0.05 -9.79 16 9 N -0.67 -13.25 5.38 -11.40 -0.06 -13.31 16 10 C 0.37 9.16 7.43 -154.98 -1.15 8.01 16 11 C -0.36 -8.17 9.96 -38.89 -0.39 -8.56 16 12 C -0.04 -0.86 10.15 -39.39 -0.40 -1.26 16 13 C -0.31 -7.84 9.83 -38.66 -0.38 -8.22 16 14 C 0.27 7.70 6.54 -85.00 -0.56 7.14 16 15 C -0.43 -11.85 9.13 -37.74 -0.34 -12.19 16 16 H 0.08 2.13 7.85 -52.48 -0.41 1.71 16 17 C 0.06 1.55 5.49 -17.34 -0.10 1.46 16 18 N -0.65 -18.06 9.08 55.55 0.50 -17.56 16 19 Si 0.89 19.39 29.56 -169.99 -5.03 14.36 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 23 N -0.47 -13.32 5.74 -10.26 -0.06 -13.38 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.62 6.56 -51.93 -0.34 0.27 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.68 6.56 -51.93 -0.34 0.34 16 30 H 0.08 1.65 5.95 -51.93 -0.31 1.34 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.40 6.06 8.70 -40.82 -0.36 5.71 16 35 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 37 H 0.10 2.27 8.06 -52.48 -0.42 1.84 16 38 H 0.27 7.01 8.29 -40.82 -0.34 6.68 16 LS Contribution 310.95 15.07 4.69 4.69 Total: -1.00 -31.68 310.95 -8.62 -40.31 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -5.53 Total: 7.10 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -3.19 Total: -12.42 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.38 Total: -44.25 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.05 Total: -9.79 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.68 -8.62 -40.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472928.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.780 kcal (2) G-P(sol) polarization free energy of solvation -31.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds