Wall clock time and date at job start Sun Mar 29 2020 23:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47360 * 2 1 4 4 H 1.09003 * 109.46970 * 54.99963 * 3 2 1 5 5 C 1.53003 * 109.47250 * 295.00671 * 3 2 1 6 6 C 1.52999 * 109.47666 * 175.00234 * 3 2 1 7 7 C 1.50700 * 109.47443 * 184.99974 * 6 3 2 8 8 O 1.21272 * 119.99703 * 0.02562 * 7 6 3 9 9 N 1.34772 * 119.99922 * 179.97438 * 7 6 3 10 10 C 1.39264 * 119.99844 * 174.84535 * 9 7 6 11 11 C 1.39678 * 119.57612 * 185.71642 * 10 9 7 12 12 C 1.38655 * 119.49479 * 180.02562 * 11 10 9 13 13 C 1.38342 * 118.67110 * 359.97438 * 12 11 10 14 14 C 1.40578 * 119.13261 * 359.97438 * 13 12 11 15 15 C 1.41329 * 119.79053 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99841 * 5.70273 * 15 14 13 17 17 C 1.40024 * 120.00382 * 185.69771 * 15 14 13 18 18 N 1.30746 * 119.99864 * 354.92503 * 17 15 14 19 19 Si 1.86798 * 120.00381 * 174.91953 * 17 15 14 20 20 H 1.48504 * 109.47143 * 94.99779 * 19 17 15 21 21 H 1.48504 * 109.47460 * 215.00153 * 19 17 15 22 22 H 1.48503 * 109.47137 * 335.00228 * 19 17 15 23 23 N 1.31907 * 119.57612 * 5.44266 * 10 9 7 24 24 H 1.09003 * 109.46628 * 299.99944 * 1 2 3 25 25 H 1.09001 * 109.47242 * 59.99549 * 1 2 3 26 26 H 1.09001 * 109.46824 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47331 * 240.00312 * 2 1 3 28 28 H 1.08998 * 109.47482 * 119.99978 * 2 1 3 29 29 H 1.08994 * 109.47222 * 59.99307 * 5 3 2 30 30 H 1.08991 * 109.47574 * 180.02562 * 5 3 2 31 31 H 1.09003 * 109.46556 * 299.99545 * 5 3 2 32 32 H 1.09003 * 109.46882 * 64.99808 * 6 3 2 33 33 H 1.09004 * 109.46786 * 305.00543 * 6 3 2 34 34 H 0.97002 * 120.00074 * 354.85010 * 9 7 6 35 35 H 1.07994 * 120.25132 * 359.97438 * 11 10 9 36 36 H 1.08003 * 120.66059 * 180.02562 * 12 11 10 37 37 H 1.08007 * 120.43429 * 179.97438 * 13 12 11 38 38 H 0.97002 * 119.99932 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5649 1.4444 0.1257 7 6 4.0570 2.8634 0.2492 8 8 3.2660 3.7826 0.2383 9 7 5.3761 3.1108 0.3728 10 6 5.8407 4.4236 0.3789 11 6 7.2159 4.6682 0.3865 12 6 7.6766 5.9759 0.3931 13 6 6.7524 7.0053 0.3914 14 6 5.3815 6.6942 0.3825 15 6 4.4253 7.7349 0.3812 16 1 4.7458 8.7626 0.2941 17 6 3.0624 7.4336 0.4928 18 7 2.6666 6.1875 0.4983 19 14 1.8096 8.8120 0.6341 20 1 1.2668 9.1275 -0.7118 21 1 0.7023 8.3851 1.5268 22 1 2.4637 10.0194 1.1994 23 7 4.9765 5.4201 0.3719 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 0.5489 2.1253 -1.3968 30 1 1.9989 3.1541 -1.3075 31 1 2.0698 1.5876 -2.1491 32 1 4.0029 0.9836 -0.7597 33 1 3.8571 0.8800 1.0112 34 1 6.0018 2.3744 0.4574 35 1 7.9149 3.8450 0.3880 36 1 8.7359 6.1867 0.3986 37 1 7.0798 8.0346 0.3969 38 1 1.7225 5.9788 0.5752 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882472928.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:00 Heat of formation + Delta-G solvation = -19.051808 kcal Electronic energy + Delta-G solvation = -19909.598263 eV Core-core repulsion = 16944.410054 eV Total energy + Delta-G solvation = -2965.188209 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.99434 -39.46511 -37.19008 -35.80082 -34.78416 -32.25037 -31.74250 -30.73137 -28.52294 -27.35607 -25.10353 -23.61234 -22.94142 -21.09362 -20.49197 -19.50415 -17.92365 -17.48198 -16.50939 -16.34936 -16.25458 -15.77508 -15.54333 -15.17005 -14.73437 -14.59265 -14.26202 -13.82045 -13.63526 -13.29236 -12.94343 -12.76732 -12.70931 -12.64774 -12.55959 -12.31045 -12.10466 -11.77606 -11.64224 -11.49952 -11.37520 -11.33986 -10.81376 -10.42119 -9.87789 -9.02887 -8.76914 -8.04815 -6.40986 0.94210 1.26648 1.38662 1.49543 1.53703 2.25061 2.26049 2.45141 3.00424 3.87937 3.93021 4.04514 4.09224 4.30778 4.43660 4.50693 4.65895 4.71269 4.78991 4.79148 4.89052 4.94075 4.96763 4.98716 5.09636 5.16076 5.21056 5.26950 5.31059 5.41529 5.58184 5.67720 5.70242 5.90797 5.93888 6.17458 6.40337 6.79035 6.90140 7.10631 7.82186 8.37603 8.57414 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.016267 B = 0.007232 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.878633 B = 3870.889754 C = 5456.405215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.071 4.071 4 H 0.048 0.952 5 C -0.147 4.147 6 C -0.120 4.120 7 C 0.453 3.547 8 O -0.454 6.454 9 N -0.660 5.660 10 C 0.348 3.652 11 C -0.348 4.348 12 C -0.036 4.036 13 C -0.333 4.333 14 C 0.237 3.763 15 C -0.468 4.468 16 H 0.083 0.917 17 C 0.013 3.987 18 N -0.687 5.687 19 Si 0.972 3.028 20 H -0.267 1.267 21 H -0.273 1.273 22 H -0.256 1.256 23 N -0.506 5.506 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.036 0.964 31 H 0.057 0.943 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.419 0.581 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.102 0.898 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.123 -13.083 -0.805 13.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.090 4.090 4 H 0.067 0.933 5 C -0.204 4.204 6 C -0.160 4.160 7 C 0.238 3.762 8 O -0.321 6.321 9 N -0.310 5.310 10 C 0.109 3.891 11 C -0.373 4.373 12 C -0.060 4.060 13 C -0.356 4.356 14 C 0.111 3.889 15 C -0.499 4.499 16 H 0.101 0.899 17 C -0.213 4.213 18 N -0.306 5.306 19 Si 0.793 3.207 20 H -0.192 1.192 21 H -0.198 1.198 22 H -0.180 1.180 23 N -0.226 5.226 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.257 0.743 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.120 0.880 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.872 -12.779 -0.835 13.125 hybrid contribution 0.816 0.803 0.123 1.152 sum -2.055 -11.976 -0.713 12.172 Atomic orbital electron populations 1.21816 0.95882 1.01978 1.01456 1.21526 0.96024 0.94185 1.02957 1.20842 0.93290 0.96965 0.97930 0.93317 1.21886 1.00891 1.00543 0.97089 1.21756 0.97096 0.91545 1.05579 1.21948 0.82395 0.93480 0.78378 1.91106 1.53420 1.46051 1.41506 1.43565 1.09241 1.05147 1.73011 1.19239 0.89735 0.86855 0.93247 1.21003 0.93378 0.97672 1.25281 1.21032 0.98817 0.92109 0.94022 1.21803 0.94378 0.98700 1.20699 1.18881 0.91231 0.90194 0.88566 1.19871 0.91660 0.93631 1.44743 0.89853 1.26991 1.01097 0.98663 0.94550 1.70523 1.16243 1.18737 1.25105 0.85355 0.77587 0.78896 0.78848 1.19189 1.19791 1.17967 1.68696 1.34291 0.98269 1.21312 0.93692 0.93035 0.91336 0.90672 0.90780 0.92721 0.94499 0.92430 0.87239 0.87011 0.74322 0.85117 0.84683 0.87962 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.67 71.98 0.70 -2.21 16 2 C -0.11 -2.08 5.40 30.59 0.17 -1.91 16 3 C -0.07 -1.92 2.04 -10.79 -0.02 -1.95 16 4 H 0.05 1.60 7.95 -2.39 -0.02 1.58 16 5 C -0.15 -4.52 8.69 71.98 0.63 -3.89 16 6 C -0.12 -3.07 5.18 29.85 0.15 -2.92 16 7 C 0.45 17.86 7.50 87.66 0.66 18.52 16 8 O -0.45 -22.98 9.80 -3.01 -0.03 -23.01 16 9 N -0.66 -25.37 5.38 -308.37 -1.66 -27.03 16 10 C 0.35 17.10 7.43 133.25 0.99 18.09 16 11 C -0.35 -15.14 9.96 22.72 0.23 -14.91 16 12 C -0.04 -1.59 10.15 22.39 0.23 -1.36 16 13 C -0.33 -17.25 9.83 22.87 0.22 -17.03 16 14 C 0.24 13.97 6.54 40.19 0.26 14.23 16 15 C -0.47 -27.23 9.13 23.46 0.21 -27.02 16 16 H 0.08 4.56 7.85 -2.91 -0.02 4.54 16 17 C 0.01 0.70 5.49 85.29 0.47 1.16 16 18 N -0.69 -39.94 9.08 21.84 0.20 -39.74 16 19 Si 0.97 41.48 29.56 68.60 2.03 43.51 16 20 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 23 N -0.51 -29.47 5.74 -186.36 -1.07 -30.54 16 24 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.05 1.02 6.56 -2.39 -0.02 1.01 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.05 1.56 6.56 -2.39 -0.02 1.54 16 30 H 0.04 1.50 5.95 -2.39 -0.01 1.49 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 34 H 0.42 11.65 8.70 -92.71 -0.81 10.84 16 35 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 36 H 0.14 4.83 8.06 -2.91 -0.02 4.81 16 37 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 38 H 0.27 14.77 8.29 -92.71 -0.77 14.00 16 Total: -1.00 -73.77 310.95 4.61 -69.16 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.25 Total: 28.85 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: 4.89 Total: -21.19 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -2.53 Total: -97.31 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.03 Total: -23.01 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -73.77 4.61 -69.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472928.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.108 kcal (2) G-P(sol) polarization free energy of solvation -73.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds