Wall clock time and date at job start Mon Mar 30 2020 00:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47225 * 2 1 4 4 C 1.53004 * 109.47182 * 119.99961 * 2 1 3 5 5 H 1.09003 * 109.46895 * 60.03571 * 4 2 1 6 6 N 1.46902 * 109.47016 * 180.02562 * 4 2 1 7 7 C 1.46898 * 110.99852 * 273.66262 * 6 4 2 8 8 C 1.53010 * 109.47284 * 178.85525 * 7 6 4 9 9 C 1.52992 * 109.47272 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47107 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99847 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00261 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99972 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00342 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47162 * 89.99633 * 14 12 10 16 16 H 1.48494 * 109.47352 * 209.99649 * 14 12 10 17 17 H 1.48494 * 109.46858 * 329.99956 * 14 12 10 18 18 C 1.50692 * 109.47128 * 300.03371 * 4 2 1 19 19 C 1.38229 * 119.61518 * 118.25013 * 18 4 2 20 20 C 1.38627 * 119.16065 * 179.75718 * 19 18 4 21 21 C 1.38677 * 118.42268 * 0.50562 * 20 19 18 22 22 C 1.38186 * 119.16022 * 359.73311 * 21 20 19 23 23 N 1.31856 * 119.62185 * 298.52143 * 18 4 2 24 24 H 1.08995 * 109.47290 * 303.97173 * 1 2 3 25 25 H 1.08992 * 109.47162 * 63.97662 * 1 2 3 26 26 H 1.09002 * 109.46993 * 183.97628 * 1 2 3 27 27 H 1.08998 * 109.47364 * 240.00175 * 2 1 3 28 28 H 1.09003 * 109.47366 * 52.74909 * 3 2 1 29 29 H 1.09003 * 109.47479 * 172.74825 * 3 2 1 30 30 H 1.09004 * 109.47291 * 292.75353 * 3 2 1 31 31 H 1.00902 * 110.99898 * 37.61590 * 6 4 2 32 32 H 1.09001 * 109.47238 * 58.86085 * 7 6 4 33 33 H 1.09002 * 109.47522 * 298.85504 * 7 6 4 34 34 H 1.09002 * 109.46824 * 300.00407 * 8 7 6 35 35 H 1.09001 * 109.46526 * 60.00124 * 8 7 6 36 36 H 1.09002 * 109.47293 * 299.99831 * 9 8 7 37 37 H 1.08999 * 109.47440 * 59.99639 * 9 8 7 38 38 H 0.96999 * 120.00345 * 180.02562 * 13 12 10 39 39 H 1.08001 * 120.42230 * 359.97438 * 19 18 4 40 40 H 1.07997 * 120.79329 * 180.26051 * 20 19 18 41 41 H 1.07993 * 120.42343 * 179.71701 * 21 20 19 42 42 H 1.07998 * 119.61810 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6772 -1.7491 1.2489 6 7 3.5090 -0.7207 1.2495 7 6 4.0360 -1.8619 0.4893 8 6 5.5653 -1.8115 0.4881 9 6 6.1141 -2.9996 -0.3042 10 6 7.6203 -2.9503 -0.3048 11 1 8.1346 -2.1512 0.2083 12 6 8.3417 -3.9248 -0.9612 13 7 7.7154 -4.8977 -1.5865 14 14 10.2087 -3.8633 -0.9626 15 1 10.7296 -4.6156 0.2070 16 1 10.7232 -4.4753 -2.2139 17 1 10.6574 -2.4501 -0.8818 18 6 1.5370 -0.0114 2.4797 19 6 0.7132 -0.6803 3.3655 20 6 0.2601 -0.0198 4.4969 21 6 0.6456 1.2981 4.6907 22 6 1.4673 1.9032 3.7589 23 7 1.8834 1.2423 2.6961 24 1 -0.3633 0.5742 0.8522 25 1 -0.3633 0.4508 -0.9234 26 1 -0.3633 -1.0252 0.0713 27 1 1.8933 -0.5138 -0.8900 28 1 1.5746 1.9924 0.8180 29 1 3.1223 1.4453 0.1297 30 1 1.7864 1.9176 -0.9477 31 1 3.8703 0.1505 0.8910 32 1 3.6702 -1.8151 -0.5365 33 1 3.7035 -2.7913 0.9517 34 1 5.8978 -0.8821 0.0257 35 1 5.9310 -1.8582 1.5139 36 1 5.7816 -3.9292 0.1578 37 1 5.7482 -2.9526 -1.3299 38 1 8.2229 -5.5835 -2.0480 39 1 0.4290 -1.7056 3.1803 40 1 -0.3812 -0.5184 5.2086 41 1 0.3077 1.8448 5.5586 42 1 1.7724 2.9292 3.9027 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775448564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:23 Heat of formation + Delta-G solvation = 16.094037 kcal Electronic energy + Delta-G solvation = -19473.616605 eV Core-core repulsion = 16645.785529 eV Total energy + Delta-G solvation = -2827.831076 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 262.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.53687 -37.69506 -34.67434 -32.85428 -32.44743 -31.53278 -30.46660 -27.21930 -26.82313 -24.82163 -23.51419 -22.51059 -22.21938 -20.12279 -19.72543 -16.97817 -16.30709 -16.12359 -15.84034 -15.43741 -14.99095 -14.50366 -14.28403 -13.87975 -13.76079 -13.39406 -13.14728 -12.61698 -12.39117 -12.16546 -12.04353 -11.95865 -11.58621 -11.47369 -11.08531 -10.87059 -10.79829 -10.73227 -10.51348 -10.46219 -9.87143 -9.65102 -9.38741 -9.25198 -9.07154 -8.94336 -8.30296 -8.03773 -5.95683 -3.97425 1.06694 1.23361 3.35338 3.41142 3.45192 3.72311 4.23989 4.40641 4.51266 4.74182 4.78190 4.84305 4.98745 5.01062 5.09109 5.16952 5.40111 5.41595 5.54790 5.60546 5.63789 5.71217 5.83527 5.91806 5.94329 6.00319 6.05251 6.09020 6.12803 6.27520 6.37408 6.45917 6.70765 6.78555 6.82739 7.19158 7.39140 7.72612 7.74927 7.88904 8.01221 8.05161 8.48813 9.09821 9.66351 11.15801 Molecular weight = 262.17amu Principal moments of inertia in cm(-1) A = 0.029061 B = 0.003540 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.267550 B = 7907.989362 C = 8216.851661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.121 4.121 3 C -0.146 4.146 4 C 0.138 3.862 5 H 0.089 0.911 6 N -0.680 5.680 7 C 0.058 3.942 8 C -0.107 4.107 9 C 0.023 3.977 10 C -0.518 4.518 11 H 0.055 0.945 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.162 3.838 19 C -0.168 4.168 20 C -0.076 4.076 21 C -0.185 4.185 22 C 0.096 3.904 23 N -0.464 5.464 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.043 0.957 31 H 0.347 0.653 32 H 0.026 0.974 33 H 0.066 0.934 34 H 0.045 0.955 35 H 0.055 0.945 36 H 0.016 0.984 37 H 0.014 0.986 38 H 0.260 0.740 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.463 11.951 8.966 23.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.142 4.142 3 C -0.203 4.203 4 C 0.026 3.974 5 H 0.107 0.893 6 N -0.312 5.312 7 C -0.070 4.070 8 C -0.145 4.145 9 C -0.015 4.015 10 C -0.556 4.556 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.199 1.199 18 C 0.023 3.977 19 C -0.188 4.188 20 C -0.102 4.102 21 C -0.205 4.205 22 C -0.061 4.061 23 N -0.173 5.173 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.169 0.831 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.034 0.966 37 H 0.032 0.968 38 H 0.069 0.931 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -17.806 11.891 8.862 23.173 hybrid contribution 0.272 -0.270 -0.238 0.451 sum -17.534 11.621 8.625 22.735 Atomic orbital electron populations 1.21776 0.95211 1.01466 1.01475 1.21732 0.96215 0.97950 0.98283 1.21950 1.01607 0.95295 1.01464 1.20530 0.89713 0.97548 0.89582 0.89339 1.60637 1.04170 1.07372 1.59052 1.22183 0.97408 0.92731 0.94664 1.21619 0.91204 1.00590 1.01067 1.19060 0.95436 0.92231 0.94778 1.21268 0.91869 1.09786 1.32670 0.92684 1.25028 0.98491 0.95533 0.95492 1.69969 1.35357 1.13453 1.34901 0.86597 0.85883 0.78196 0.77356 1.20682 1.21281 1.19875 1.21142 0.91626 0.89873 0.95020 1.21953 1.00008 1.01328 0.95548 1.21515 0.97658 0.94492 0.96571 1.22069 1.01007 0.96154 1.01270 1.22782 0.93711 0.99906 0.89716 1.67582 1.21397 1.08469 1.19848 0.93082 0.92757 0.92770 0.90697 0.90424 0.92407 0.93748 0.83123 0.95598 0.91568 0.93659 0.92617 0.96606 0.96783 0.93082 0.85111 0.85206 0.85298 0.83111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.86 37.16 0.33 -1.11 16 2 C -0.12 -1.45 2.83 -90.62 -0.26 -1.70 16 3 C -0.15 -1.75 8.23 37.16 0.31 -1.44 16 4 C 0.14 1.80 2.23 -68.87 -0.15 1.64 16 5 H 0.09 1.12 7.52 -51.93 -0.39 0.73 16 6 N -0.68 -10.63 6.23 -107.95 -0.67 -11.30 16 7 C 0.06 1.04 5.48 -3.82 -0.02 1.02 16 8 C -0.11 -2.29 5.40 -26.73 -0.14 -2.43 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 11 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 14 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 18 C 0.16 2.03 4.45 -82.59 -0.37 1.66 16 19 C -0.17 -1.81 9.71 -39.44 -0.38 -2.20 16 20 C -0.08 -0.70 10.18 -39.28 -0.40 -1.10 16 21 C -0.18 -1.64 10.11 -39.44 -0.40 -2.04 16 22 C 0.10 0.99 11.18 -17.55 -0.20 0.79 16 23 N -0.46 -5.83 7.21 -9.47 -0.07 -5.90 16 24 H 0.05 0.54 7.36 -51.93 -0.38 0.15 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.95 7.52 -51.93 -0.39 0.56 16 28 H 0.08 0.95 5.83 -51.93 -0.30 0.65 16 29 H 0.06 0.75 5.97 -51.93 -0.31 0.44 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.35 5.43 6.14 -39.29 -0.24 5.18 16 32 H 0.03 0.45 7.51 -51.93 -0.39 0.06 16 33 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 34 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.13 1.20 7.94 -52.49 -0.42 0.79 16 40 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 42 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 336.87 15.07 5.08 5.08 Total: -1.00 -31.42 336.87 -9.20 -40.62 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.01 Total: 1.42 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -2.24 Total: -20.29 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.00 Total: -43.89 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.42 -9.20 -40.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775448564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.713 kcal (2) G-P(sol) polarization free energy of solvation -31.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds