Wall clock time and date at job start Mon Mar 30 2020 00:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31448 * 1 3 3 Si 1.86798 * 119.99566 * 2 1 4 4 H 1.48497 * 109.47587 * 269.99976 * 3 2 1 5 5 H 1.48497 * 109.47333 * 30.00605 * 3 2 1 6 6 H 1.48505 * 109.46887 * 149.99919 * 3 2 1 7 7 C 1.38747 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99872 * 180.02562 * 7 2 1 9 9 O 1.34915 * 120.00122 * 359.97438 * 7 2 1 10 10 C 1.34320 * 116.99944 * 179.97438 * 9 7 2 11 11 O 1.21204 * 120.00046 * 0.02562 * 10 9 7 12 12 C 1.50694 * 119.99990 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.47054 * 180.02562 * 12 10 9 14 14 C 1.50708 * 109.46908 * 180.02562 * 13 12 10 15 15 O 1.21244 * 120.00088 * 359.97438 * 14 13 12 16 16 C 1.47186 * 119.99854 * 180.02562 * 14 13 12 17 17 C 1.39892 * 120.13699 * 359.97438 * 16 14 13 18 18 C 1.37911 * 119.97766 * 179.97438 * 17 16 14 19 19 C 1.38291 * 120.25558 * 0.27953 * 18 17 16 20 20 C 1.39026 * 120.27407 * 359.44951 * 19 18 17 21 21 N 1.39717 * 119.98903 * 180.25821 * 20 19 18 22 22 C 1.38613 * 120.01843 * 0.54380 * 20 19 18 23 23 H 0.96998 * 120.00488 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47631 * 60.00142 * 12 10 9 25 25 H 1.09000 * 109.47034 * 300.00478 * 12 10 9 26 26 H 1.09000 * 109.47116 * 60.00396 * 13 12 10 27 27 H 1.08995 * 109.47018 * 299.99584 * 13 12 10 28 28 H 1.08005 * 120.00815 * 0.02562 * 17 16 14 29 29 H 1.08002 * 119.86947 * 179.97438 * 18 17 16 30 30 H 1.08001 * 119.85997 * 179.71757 * 19 18 17 31 31 H 0.97002 * 119.99555 * 180.28989 * 21 20 19 32 32 H 0.96997 * 119.99884 * 0.28692 * 21 20 19 33 33 H 1.08001 * 120.12784 * 179.74939 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4959 2.0466 -1.4000 5 1 1.4458 2.6526 0.7001 6 1 3.5459 1.4403 0.7001 7 6 2.0082 -1.2016 -0.0005 8 1 3.0882 -1.2016 -0.0001 9 8 1.3337 -2.3700 -0.0005 10 6 2.0653 -3.4965 -0.0016 11 8 3.2756 -3.4330 -0.0020 12 6 1.3812 -4.8392 -0.0023 13 6 2.4350 -5.9484 -0.0028 14 6 1.7508 -7.2913 -0.0041 15 8 0.5400 -7.3547 -0.0041 16 6 2.5524 -8.5256 -0.0042 17 6 3.9496 -8.4557 -0.0037 18 6 4.6975 -9.6144 -0.0033 19 6 4.0718 -10.8476 -0.0093 20 6 2.6840 -10.9295 -0.0042 21 7 2.0581 -12.1786 -0.0048 22 6 1.9211 -9.7722 -0.0044 23 1 -0.4851 0.8400 -0.0004 24 1 0.7580 -4.9292 -0.8920 25 1 0.7587 -4.9302 0.8879 26 1 3.0577 -5.8584 0.8873 27 1 3.0576 -5.8575 -0.8927 28 1 4.4423 -7.4946 -0.0028 29 1 5.7761 -9.5584 -0.0034 30 1 4.6638 -11.7509 -0.0136 31 1 1.0897 -12.2358 -0.0054 32 1 2.5918 -12.9885 -0.0045 33 1 0.8428 -9.8337 -0.0046 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753471663.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:14 Heat of formation + Delta-G solvation = -99.642110 kcal Electronic energy + Delta-G solvation = -18307.699814 eV Core-core repulsion = 15105.465191 eV Total energy + Delta-G solvation = -3202.234623 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.16393 -38.98586 -38.38898 -35.29012 -34.75841 -32.49626 -32.07160 -31.24909 -28.97935 -26.55439 -24.94377 -23.17922 -22.31746 -20.11126 -19.25090 -17.72278 -17.54130 -17.04273 -16.44715 -16.00783 -15.64093 -15.15840 -14.77872 -14.41382 -14.30162 -14.17590 -13.81609 -13.52250 -13.36173 -12.62788 -12.34270 -11.97930 -11.62666 -11.52626 -11.25523 -11.20172 -10.88762 -10.80977 -10.40901 -10.31332 -9.75808 -9.63019 -9.13289 -8.98145 -8.53397 -7.82205 -6.36023 -4.04212 0.61663 1.38118 2.46248 3.14671 3.21590 3.27834 3.50253 3.59178 3.75455 3.86823 4.13456 4.69861 4.72203 4.90101 5.02998 5.16268 5.20758 5.27333 5.37119 5.46301 5.64320 5.73723 5.92769 6.05408 6.24864 6.26633 6.30948 6.38145 6.57745 6.83250 7.17318 7.43552 7.44032 7.59369 8.00338 8.75885 9.12505 9.91566 10.82127 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.054163 B = 0.003226 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.830061 B = 8678.581466 C = 9174.964682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.383 4.383 8 H 0.096 0.904 9 O -0.214 6.214 10 C 0.398 3.602 11 O -0.561 6.561 12 C -0.095 4.095 13 C -0.148 4.148 14 C 0.396 3.604 15 O -0.451 6.451 16 C -0.117 4.117 17 C -0.127 4.127 18 C -0.085 4.085 19 C -0.172 4.172 20 C 0.199 3.801 21 N -0.881 5.881 22 C -0.141 4.141 23 H 0.269 0.731 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.135 0.865 29 H 0.128 0.872 30 H 0.121 0.879 31 H 0.399 0.601 32 H 0.397 0.603 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.941 -21.864 -0.005 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.163 4.163 3 Si 0.768 3.232 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.459 4.459 8 H 0.113 0.887 9 O -0.121 6.121 10 C 0.245 3.755 11 O -0.459 6.459 12 C -0.133 4.133 13 C -0.185 4.185 14 C 0.274 3.726 15 O -0.326 6.326 16 C -0.119 4.119 17 C -0.148 4.148 18 C -0.104 4.104 19 C -0.195 4.195 20 C 0.095 3.905 21 N -0.420 5.420 22 C -0.164 4.164 23 H 0.079 0.921 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.153 0.847 29 H 0.146 0.854 30 H 0.139 0.861 31 H 0.227 0.773 32 H 0.225 0.775 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.425 -21.657 0.001 22.326 hybrid contribution 0.326 0.365 -0.009 0.489 sum 5.751 -21.292 -0.008 22.055 Atomic orbital electron populations 1.70003 1.06003 1.27623 1.46634 1.25345 0.95803 0.98883 0.96286 0.85680 0.79016 0.79833 0.78682 1.19920 1.20372 1.19126 1.21221 0.92351 0.79948 1.52374 0.88686 1.83888 1.39393 1.13417 1.75436 1.23141 0.86621 0.87326 0.78395 1.90534 1.15724 1.88253 1.51400 1.20850 0.97963 0.88973 1.05553 1.21770 0.99555 0.91084 1.06115 1.22643 0.88659 0.90369 0.70932 1.90512 1.16381 1.89830 1.35848 1.20307 0.94481 0.94004 1.03075 1.21358 0.92477 0.99341 1.01590 1.20886 0.99935 0.91612 0.97955 1.20799 0.92322 0.98514 1.07866 1.17672 0.91858 0.86011 0.94943 1.42444 1.09396 1.04477 1.85727 1.20833 1.00031 0.90311 1.05204 0.92111 0.88592 0.88599 0.87414 0.87422 0.84717 0.85414 0.86052 0.77295 0.77452 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.96 13.67 55.48 0.76 -25.20 16 2 C 0.04 1.17 5.49 -17.53 -0.10 1.07 16 3 Si 0.94 21.61 29.55 -169.99 -5.02 16.59 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.38 -11.53 9.64 30.92 0.30 -11.23 16 8 H 0.10 2.86 6.86 -52.49 -0.36 2.50 16 9 O -0.21 -6.30 9.75 -20.71 -0.20 -6.50 16 10 C 0.40 9.90 7.91 36.00 0.28 10.19 16 11 O -0.56 -14.75 15.22 -19.05 -0.29 -15.04 16 12 C -0.10 -1.81 5.10 -27.89 -0.14 -1.95 16 13 C -0.15 -2.26 3.60 -27.88 -0.10 -2.36 16 14 C 0.40 5.77 7.12 -30.67 -0.22 5.55 16 15 O -0.45 -7.68 15.97 5.59 0.09 -7.59 16 16 C -0.12 -1.46 5.87 -105.09 -0.62 -2.08 16 17 C -0.13 -1.38 9.47 -39.08 -0.37 -1.75 16 18 C -0.09 -0.78 10.02 -39.68 -0.40 -1.17 16 19 C -0.17 -1.50 9.89 -39.27 -0.39 -1.88 16 20 C 0.20 1.89 6.75 -83.83 -0.57 1.32 16 21 N -0.88 -5.63 9.09 32.39 0.29 -5.34 16 22 C -0.14 -1.63 9.44 -38.89 -0.37 -2.00 16 23 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.10 1.76 8.10 -51.93 -0.42 1.34 16 25 H 0.10 1.76 8.10 -51.93 -0.42 1.34 16 26 H 0.11 1.57 8.04 -51.93 -0.42 1.15 16 27 H 0.11 1.57 8.04 -51.93 -0.42 1.15 16 28 H 0.13 1.33 7.04 -52.48 -0.37 0.96 16 29 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 30 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 31 H 0.40 2.11 8.84 -40.82 -0.36 1.75 16 32 H 0.40 1.69 8.84 -40.82 -0.36 1.33 16 33 H 0.13 1.50 7.65 -52.49 -0.40 1.10 16 LS Contribution 300.79 15.07 4.53 4.53 Total: -1.00 -35.39 300.79 -6.03 -41.42 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -3.51 Total: 3.42 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -2.68 Total: -6.29 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: 1.05 Total: -30.54 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.40 Total: -29.13 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -35.39 -6.03 -41.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753471663.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.223 kcal (2) G-P(sol) polarization free energy of solvation -35.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds