Wall clock time and date at job start Mon Mar 30 2020 00:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31448 * 1 3 3 Si 1.86798 * 119.99566 * 2 1 4 4 H 1.48497 * 109.47587 * 269.99976 * 3 2 1 5 5 H 1.48497 * 109.47333 * 30.00605 * 3 2 1 6 6 H 1.48505 * 109.46887 * 149.99919 * 3 2 1 7 7 C 1.38747 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99872 * 180.02562 * 7 2 1 9 9 O 1.34915 * 120.00122 * 359.97438 * 7 2 1 10 10 C 1.34320 * 116.99944 * 179.97438 * 9 7 2 11 11 O 1.21204 * 120.00046 * 0.02562 * 10 9 7 12 12 C 1.50694 * 119.99990 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.47054 * 180.02562 * 12 10 9 14 14 C 1.50708 * 109.46908 * 180.02562 * 13 12 10 15 15 O 1.21244 * 120.00088 * 359.97438 * 14 13 12 16 16 C 1.47186 * 119.99854 * 180.02562 * 14 13 12 17 17 C 1.39892 * 120.13699 * 359.97438 * 16 14 13 18 18 C 1.37911 * 119.97766 * 179.97438 * 17 16 14 19 19 C 1.38291 * 120.25558 * 0.27953 * 18 17 16 20 20 C 1.39026 * 120.27407 * 359.44951 * 19 18 17 21 21 N 1.39717 * 119.98903 * 180.25821 * 20 19 18 22 22 C 1.38613 * 120.01843 * 0.54380 * 20 19 18 23 23 H 0.96998 * 120.00488 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47631 * 60.00142 * 12 10 9 25 25 H 1.09000 * 109.47034 * 300.00478 * 12 10 9 26 26 H 1.09000 * 109.47116 * 60.00396 * 13 12 10 27 27 H 1.08995 * 109.47018 * 299.99584 * 13 12 10 28 28 H 1.08005 * 120.00815 * 0.02562 * 17 16 14 29 29 H 1.08002 * 119.86947 * 179.97438 * 18 17 16 30 30 H 1.08001 * 119.85997 * 179.71757 * 19 18 17 31 31 H 0.97002 * 119.99555 * 180.28989 * 21 20 19 32 32 H 0.96997 * 119.99884 * 0.28692 * 21 20 19 33 33 H 1.08001 * 120.12784 * 179.74939 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4959 2.0466 -1.4000 5 1 1.4458 2.6526 0.7001 6 1 3.5459 1.4403 0.7001 7 6 2.0082 -1.2016 -0.0005 8 1 3.0882 -1.2016 -0.0001 9 8 1.3337 -2.3700 -0.0005 10 6 2.0653 -3.4965 -0.0016 11 8 3.2756 -3.4330 -0.0020 12 6 1.3812 -4.8392 -0.0023 13 6 2.4350 -5.9484 -0.0028 14 6 1.7508 -7.2913 -0.0041 15 8 0.5400 -7.3547 -0.0041 16 6 2.5524 -8.5256 -0.0042 17 6 3.9496 -8.4557 -0.0037 18 6 4.6975 -9.6144 -0.0033 19 6 4.0718 -10.8476 -0.0093 20 6 2.6840 -10.9295 -0.0042 21 7 2.0581 -12.1786 -0.0048 22 6 1.9211 -9.7722 -0.0044 23 1 -0.4851 0.8400 -0.0004 24 1 0.7580 -4.9292 -0.8920 25 1 0.7587 -4.9302 0.8879 26 1 3.0577 -5.8584 0.8873 27 1 3.0576 -5.8575 -0.8927 28 1 4.4423 -7.4946 -0.0028 29 1 5.7761 -9.5584 -0.0034 30 1 4.6638 -11.7509 -0.0136 31 1 1.0897 -12.2358 -0.0054 32 1 2.5918 -12.9885 -0.0045 33 1 0.8428 -9.8337 -0.0046 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753471663.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:13 Heat of formation + Delta-G solvation = -123.325623 kcal Electronic energy + Delta-G solvation = -18308.726809 eV Core-core repulsion = 15105.465191 eV Total energy + Delta-G solvation = -3203.261617 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.33797 -40.79466 -39.44140 -37.37239 -35.46867 -34.31896 -33.92044 -32.10235 -29.80124 -28.17779 -26.70884 -24.34090 -23.07960 -21.76908 -20.49815 -19.87739 -18.85852 -17.99168 -17.69058 -17.24087 -16.84516 -16.63667 -16.22116 -16.04330 -15.74885 -15.64119 -14.61675 -14.52637 -14.42811 -14.22180 -13.87976 -13.55184 -13.06633 -13.04690 -12.67620 -12.38855 -12.19922 -12.16183 -12.14184 -11.96670 -11.56931 -11.05134 -10.80195 -10.69712 -9.93454 -8.53299 -8.48449 -6.33914 -0.29450 0.62775 1.31287 1.34985 1.46177 1.53128 1.64717 2.10195 2.55830 2.94658 2.97617 2.97996 3.27327 3.68261 3.98493 4.07205 4.14985 4.25896 4.43417 4.50080 4.58946 4.78614 4.80271 4.87118 4.95042 5.01277 5.18442 5.29410 5.45797 5.56926 5.83516 5.87769 6.45587 6.56128 6.65534 6.91542 6.99854 7.77376 8.67890 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.054163 B = 0.003226 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.830061 B = 8678.581466 C = 9174.964682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.008 4.008 3 Si 1.021 2.979 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.261 1.261 7 C -0.422 4.422 8 H 0.086 0.914 9 O -0.249 6.249 10 C 0.399 3.601 11 O -0.575 6.575 12 C -0.087 4.087 13 C -0.141 4.141 14 C 0.406 3.594 15 O -0.484 6.484 16 C -0.137 4.137 17 C -0.136 4.136 18 C -0.084 4.084 19 C -0.166 4.166 20 C 0.198 3.802 21 N -0.870 5.870 22 C -0.160 4.160 23 H 0.278 0.722 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.140 0.860 29 H 0.155 0.845 30 H 0.151 0.849 31 H 0.404 0.596 32 H 0.410 0.590 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.660 -22.981 -0.025 24.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.208 4.208 3 Si 0.839 3.161 4 H -0.184 1.184 5 H -0.186 1.186 6 H -0.185 1.185 7 C -0.497 4.497 8 H 0.104 0.896 9 O -0.158 6.158 10 C 0.247 3.753 11 O -0.473 6.473 12 C -0.125 4.125 13 C -0.178 4.178 14 C 0.286 3.714 15 O -0.362 6.362 16 C -0.139 4.139 17 C -0.156 4.156 18 C -0.102 4.102 19 C -0.189 4.189 20 C 0.092 3.908 21 N -0.410 5.410 22 C -0.183 4.183 23 H 0.088 0.912 24 H 0.120 0.880 25 H 0.120 0.880 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.158 0.842 29 H 0.173 0.827 30 H 0.169 0.831 31 H 0.233 0.767 32 H 0.241 0.759 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.148 -22.834 -0.021 23.926 hybrid contribution -0.169 0.522 -0.003 0.549 sum 6.980 -22.311 -0.024 23.377 Atomic orbital electron populations 1.70098 1.07823 1.29395 1.47087 1.26624 0.96892 1.02600 0.94684 0.84584 0.77687 0.74285 0.79539 1.18416 1.18572 1.18489 1.21482 0.92300 0.81131 1.54820 0.89628 1.83913 1.40624 1.14440 1.76791 1.24230 0.86703 0.88094 0.76265 1.90501 1.16613 1.88650 1.51559 1.20931 0.98814 0.86603 1.06106 1.21751 0.98635 0.90354 1.07045 1.22679 0.88253 0.90762 0.69677 1.90502 1.17614 1.90157 1.37939 1.20136 0.95066 0.93133 1.05524 1.21502 0.91794 1.00504 1.01828 1.21234 1.01285 0.91059 0.96658 1.21192 0.92105 0.99616 1.06003 1.17779 0.92369 0.86330 0.94289 1.42440 1.09964 1.04002 1.84624 1.20853 0.99918 0.90966 1.06595 0.91225 0.87956 0.87964 0.86524 0.86529 0.84246 0.82697 0.83084 0.76673 0.75938 0.86053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.13 13.67 21.62 0.30 -54.83 16 2 C -0.01 -0.48 5.49 84.87 0.47 -0.01 16 3 Si 1.02 44.04 29.55 68.60 2.03 46.07 16 4 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 5 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 6 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.42 -26.07 9.64 67.94 0.66 -25.42 16 8 H 0.09 5.29 6.86 -2.91 -0.02 5.27 16 9 O -0.25 -15.15 9.75 14.83 0.14 -15.01 16 10 C 0.40 20.31 7.91 71.23 0.56 20.87 16 11 O -0.58 -30.68 15.22 20.79 0.32 -30.37 16 12 C -0.09 -3.34 5.10 29.85 0.15 -3.19 16 13 C -0.14 -4.28 3.60 29.85 0.11 -4.17 16 14 C 0.41 11.89 7.12 28.04 0.20 12.09 16 15 O -0.48 -16.89 15.97 -2.92 -0.05 -16.94 16 16 C -0.14 -3.37 5.87 -20.17 -0.12 -3.48 16 17 C -0.14 -2.73 9.47 22.59 0.21 -2.52 16 18 C -0.08 -1.29 10.02 22.20 0.22 -1.06 16 19 C -0.17 -2.36 9.89 22.47 0.22 -2.14 16 20 C 0.20 3.35 6.75 38.16 0.26 3.61 16 21 N -0.87 -9.16 9.09 -51.45 -0.47 -9.63 16 22 C -0.16 -3.62 9.44 22.72 0.21 -3.41 16 23 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 24 H 0.10 3.82 8.10 -2.39 -0.02 3.80 16 25 H 0.10 3.82 8.10 -2.39 -0.02 3.80 16 26 H 0.12 3.34 8.04 -2.39 -0.02 3.33 16 27 H 0.12 3.34 8.04 -2.39 -0.02 3.32 16 28 H 0.14 2.57 7.04 -2.91 -0.02 2.54 16 29 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 30 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 31 H 0.40 3.61 8.84 -92.71 -0.82 2.79 16 32 H 0.41 2.28 8.84 -92.71 -0.82 1.46 16 33 H 0.12 2.86 7.65 -2.91 -0.02 2.84 16 Total: -1.00 -77.93 300.79 4.95 -72.98 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -0.48 Total: 16.55 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 3.16 Total: -8.82 kcal Atomic # 7 Polarization: -64.29 SS G_CDS: -0.17 Total: -64.46 kcal Atomic # 8 Polarization: -62.73 SS G_CDS: 0.41 Total: -62.31 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -77.93 4.95 -72.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753471663.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.349 kcal (2) G-P(sol) polarization free energy of solvation -77.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds