Wall clock time and date at job start Mon Mar 30 2020 01:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46507 * 119.99816 * 2 1 4 4 C 1.50702 * 109.47188 * 274.99864 * 3 2 1 5 5 H 1.07997 * 120.00121 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99787 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00237 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99794 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47149 * 60.00478 * 8 6 4 10 10 H 1.48496 * 109.47238 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47056 * 300.00304 * 8 6 4 12 12 S 1.65594 * 120.00615 * 179.97438 * 2 1 3 13 13 O 1.42103 * 104.27375 * 333.93170 * 12 2 1 14 14 O 1.42101 * 104.28151 * 206.07502 * 12 2 1 15 15 C 1.81399 * 104.45139 * 89.99929 * 12 2 1 16 16 C 1.53175 * 109.54527 * 304.56316 * 15 12 2 17 17 C 1.53094 * 109.16661 * 183.15111 * 16 15 12 18 18 O 1.42898 * 109.41211 * 57.60371 * 17 16 15 19 19 C 1.42897 * 114.10001 * 298.84343 * 18 17 16 20 20 C 1.53089 * 109.41656 * 61.16248 * 19 18 17 21 21 H 1.08995 * 109.47595 * 269.99858 * 1 2 3 22 22 H 1.09001 * 109.47493 * 30.00076 * 1 2 3 23 23 H 1.09002 * 109.46753 * 150.00085 * 1 2 3 24 24 H 1.09007 * 109.47017 * 35.00019 * 3 2 1 25 25 H 1.08995 * 109.47264 * 154.99819 * 3 2 1 26 26 H 0.96998 * 119.99617 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.61268 * 64.77837 * 15 12 2 28 28 H 1.09004 * 109.52259 * 303.05376 * 16 15 12 29 29 H 1.09006 * 109.52330 * 63.24210 * 16 15 12 30 30 H 1.09006 * 109.47665 * 297.62062 * 17 16 15 31 31 H 1.08993 * 109.47955 * 177.58818 * 17 16 15 32 32 H 1.09002 * 109.48425 * 301.17758 * 19 18 17 33 33 H 1.09001 * 109.49443 * 181.15303 * 19 18 17 34 34 H 1.08997 * 109.52675 * 182.48845 * 20 19 18 35 35 H 1.08995 * 109.52428 * 62.29514 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7658 -1.4154 5 1 1.9282 1.1940 -2.2331 6 6 2.9997 2.9510 -1.6663 7 7 3.5024 3.6476 -0.6704 8 14 3.1787 3.5666 -3.4208 9 1 1.8326 3.7716 -4.0133 10 1 3.9211 4.8527 -3.4208 11 1 3.9254 2.5646 -4.2232 12 16 2.2931 -1.4340 0.0006 13 8 1.3970 -2.3558 0.6062 14 8 3.5395 -1.1187 0.6058 15 6 2.5195 -1.8268 -1.7558 16 6 1.1574 -1.8456 -2.4564 17 6 1.3501 -2.2547 -3.9190 18 8 1.9882 -3.5322 -3.9747 19 6 3.2857 -3.5629 -3.3770 20 6 3.1708 -3.2064 -1.8926 21 1 -0.3634 0.0000 1.0276 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 1.6500 2.0044 0.5895 25 1 3.1857 1.1178 0.4343 26 1 3.9658 4.4812 -0.8471 27 1 3.1576 -1.0746 -2.2196 28 1 0.5028 -2.5627 -1.9609 29 1 0.7111 -0.8522 -2.4118 30 1 1.9718 -1.5155 -4.4243 31 1 0.3795 -2.3114 -4.4115 32 1 3.9327 -2.8409 -3.8751 33 1 3.7097 -4.5619 -3.4791 34 1 4.1643 -3.1861 -1.4448 35 1 2.5569 -3.9509 -1.3857 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050199708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:50 Heat of formation + Delta-G solvation = -148.251307 kcal Electronic energy + Delta-G solvation = -19471.456260 eV Core-core repulsion = 16402.557735 eV Total energy + Delta-G solvation = -3068.898525 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.20352 -38.20662 -37.32293 -36.95866 -34.89537 -34.49758 -32.13793 -29.66111 -26.81268 -26.46422 -24.80803 -24.03642 -21.57480 -19.82732 -18.68079 -18.44115 -17.95353 -17.35150 -16.94057 -16.57007 -16.38191 -15.80195 -15.23951 -15.19449 -14.90529 -14.68995 -14.00100 -13.94020 -13.42380 -13.33181 -13.18947 -13.05017 -12.99672 -12.88379 -12.49565 -12.42019 -12.34936 -12.14194 -11.99236 -11.85184 -11.72176 -11.21960 -10.58512 -10.49998 -9.66961 -8.17399 -6.33042 -0.65660 1.44120 1.45495 1.53088 1.76251 2.41455 2.84753 2.94390 3.10940 3.14160 3.36942 3.62605 3.89893 4.01607 4.09964 4.24656 4.42169 4.49696 4.56434 4.67268 4.71935 4.74741 4.81940 4.87709 4.98848 5.06031 5.08258 5.29592 5.47476 5.74194 5.90367 6.07948 6.19698 6.80135 7.38111 8.90605 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.018074 B = 0.009090 C = 0.007187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.775851 B = 3079.405038 C = 3895.054668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.996 5.996 3 C 0.256 3.744 4 C -0.547 4.547 5 H 0.081 0.919 6 C 0.009 3.991 7 N -0.930 5.930 8 Si 0.961 3.039 9 H -0.262 1.262 10 H -0.291 1.291 11 H -0.265 1.265 12 S 2.611 3.389 13 O -0.985 6.985 14 O -1.002 7.002 15 C -0.574 4.574 16 C -0.141 4.141 17 C 0.068 3.932 18 O -0.394 6.394 19 C 0.070 3.930 20 C -0.151 4.151 21 H 0.049 0.951 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.018 0.982 25 H 0.018 0.982 26 H 0.265 0.735 27 H 0.141 0.859 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.122 0.878 32 H 0.061 0.939 33 H 0.124 0.876 34 H 0.095 0.905 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.409 -11.596 -7.523 14.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.834 5.834 3 C 0.132 3.868 4 C -0.586 4.586 5 H 0.099 0.901 6 C -0.191 4.191 7 N -0.570 5.570 8 Si 0.785 3.215 9 H -0.187 1.187 10 H -0.216 1.216 11 H -0.190 1.190 12 S 2.709 3.291 13 O -0.975 6.975 14 O -0.993 6.993 15 C -0.687 4.687 16 C -0.179 4.179 17 C -0.010 4.010 18 O -0.312 6.312 19 C -0.008 4.008 20 C -0.190 4.190 21 H 0.068 0.932 22 H 0.097 0.903 23 H 0.102 0.898 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.074 0.926 27 H 0.159 0.841 28 H 0.109 0.891 29 H 0.116 0.884 30 H 0.075 0.925 31 H 0.139 0.861 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.113 0.887 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.155 -12.028 -6.719 14.390 hybrid contribution 0.497 1.365 -0.705 1.614 sum -3.658 -10.663 -7.423 13.498 Atomic orbital electron populations 1.21550 0.77990 1.03662 1.01877 1.57119 1.15379 1.21353 1.89543 1.18788 0.91006 0.80129 0.96861 1.21889 1.36189 1.07020 0.93544 0.90141 1.25883 0.94914 0.96913 1.01373 1.70077 1.37725 1.15704 1.33457 0.85567 0.78803 0.77531 0.79580 1.18690 1.21639 1.18958 1.04817 0.72914 0.72808 0.78604 1.93486 1.64904 1.63922 1.75229 1.93500 1.46472 1.83589 1.75729 1.30397 1.07405 1.07373 1.23505 1.22131 0.92477 1.04646 0.98651 1.22630 0.99381 0.85084 0.93886 1.87887 1.31864 1.32350 1.79130 1.22618 0.84774 1.03933 0.89479 1.22191 1.02299 0.92625 1.01922 0.93184 0.90332 0.89785 0.96356 0.96395 0.92561 0.84051 0.89127 0.88399 0.92500 0.86057 0.92105 0.85773 0.88692 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.05 9.32 127.77 1.19 4.24 16 2 N -1.00 -40.31 2.77 -543.22 -1.50 -41.81 16 3 C 0.26 12.86 5.39 85.63 0.46 13.32 16 4 C -0.55 -27.55 9.38 25.60 0.24 -27.31 16 5 H 0.08 3.65 7.77 -2.91 -0.02 3.63 16 6 C 0.01 0.46 5.46 84.65 0.46 0.92 16 7 N -0.93 -53.53 13.29 21.45 0.28 -53.25 16 8 Si 0.96 40.55 29.54 68.60 2.03 42.57 16 9 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 10 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 12 S 2.61 100.38 4.83 -56.49 -0.27 100.11 16 13 O -0.98 -38.66 17.08 -127.65 -2.18 -40.84 16 14 O -1.00 -47.32 16.53 -127.65 -2.11 -49.43 16 15 C -0.57 -17.09 2.96 30.71 0.09 -17.00 16 16 C -0.14 -3.54 4.32 30.68 0.13 -3.41 16 17 C 0.07 1.49 6.84 72.01 0.49 1.98 16 18 O -0.39 -9.35 10.76 -148.98 -1.60 -10.95 16 19 C 0.07 1.45 6.84 72.01 0.49 1.94 16 20 C -0.15 -3.72 5.43 30.68 0.17 -3.55 16 21 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.08 2.45 8.07 -2.39 -0.02 2.44 16 23 H 0.08 2.21 6.57 -2.39 -0.02 2.19 16 24 H 0.02 0.98 8.11 -2.38 -0.02 0.96 16 25 H 0.02 1.03 6.81 -2.39 -0.02 1.01 16 26 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 27 H 0.14 4.42 8.14 -2.39 -0.02 4.40 16 28 H 0.09 2.15 8.12 -2.38 -0.02 2.13 16 29 H 0.10 2.47 6.77 -2.38 -0.02 2.45 16 30 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -68.20 297.73 -0.56 -68.76 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 1.07 Total: 13.70 kcal Atomic # 6 Polarization: -32.59 SS G_CDS: 3.73 Total: -28.86 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -1.22 Total: -95.06 kcal Atomic # 8 Polarization: -95.33 SS G_CDS: -5.89 Total: -101.22 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.57 kcal Atomic # 16 Polarization: 100.38 SS G_CDS: -0.27 Total: 100.11 kcal Total: -68.20 -0.56 -68.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050199708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.489 kcal (2) G-P(sol) polarization free energy of solvation -68.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds