Wall clock time and date at job start Mon Mar 30 2020 01:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35616 * 117.00012 * 2 1 4 4 C 1.38659 * 120.16868 * 0.02562 * 3 2 1 5 5 C 1.38085 * 120.10798 * 180.02562 * 4 3 2 6 6 C 1.38669 * 120.45170 * 359.97183 * 5 4 3 7 7 C 1.37656 * 120.33525 * 0.02562 * 6 5 4 8 8 C 1.40015 * 119.88364 * 0.02562 * 7 6 5 9 9 C 1.47129 * 120.21794 * 179.97438 * 8 7 6 10 10 O 1.21566 * 119.99808 * 177.61792 * 9 8 7 11 11 C 1.48464 * 120.00672 * 357.61766 * 9 8 7 12 12 O 1.21561 * 119.99989 * 84.96523 * 11 9 8 13 13 N 1.34770 * 120.00134 * 264.97512 * 11 9 8 14 14 C 1.46503 * 120.00234 * 5.26033 * 13 11 9 15 15 C 1.35800 * 119.99976 * 185.26430 * 13 11 9 16 16 H 1.07998 * 120.00111 * 330.69359 * 15 13 11 17 17 C 1.39887 * 119.99918 * 150.69153 * 15 13 11 18 18 N 1.30829 * 119.99684 * 160.69808 * 17 15 13 19 19 Si 1.86799 * 120.00203 * 340.70677 * 17 15 13 20 20 H 1.48493 * 109.47504 * 90.74874 * 19 17 15 21 21 H 1.48504 * 109.47186 * 210.75505 * 19 17 15 22 22 H 1.48508 * 109.46812 * 330.74855 * 19 17 15 23 23 H 1.09008 * 109.47285 * 299.99803 * 1 2 3 24 24 H 1.08996 * 109.47274 * 59.99714 * 1 2 3 25 25 H 1.08999 * 109.47318 * 179.97438 * 1 2 3 26 26 H 1.08005 * 119.94551 * 359.97438 * 4 3 2 27 27 H 1.08005 * 119.77624 * 179.97438 * 5 4 3 28 28 H 1.07995 * 119.83064 * 180.02562 * 6 5 4 29 29 H 1.08001 * 120.06116 * 179.71855 * 7 6 5 30 30 H 1.08992 * 109.47058 * 55.77187 * 14 13 11 31 31 H 1.09002 * 109.47441 * 175.77192 * 14 13 11 32 32 H 1.09005 * 109.46912 * 295.77011 * 14 13 11 33 33 H 0.97006 * 119.99934 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2929 2.3735 0.0005 5 6 1.9211 3.6031 0.0000 6 6 3.3054 3.6852 -0.0005 7 6 4.0697 2.5403 -0.0010 8 6 3.4473 1.2860 -0.0015 9 6 4.2571 0.0576 -0.0026 10 8 3.7133 -1.0288 0.0407 11 6 5.7382 0.1447 -0.0566 12 8 6.3758 0.2959 0.9673 13 7 6.3757 0.0563 -1.2406 14 6 5.6047 -0.0097 -2.4846 15 6 7.7328 0.0284 -1.2807 16 1 8.3061 0.5261 -0.5126 17 6 8.3883 -0.6451 -2.3168 18 7 9.6399 -0.3740 -2.5843 19 14 7.4764 -1.9313 -3.3186 20 1 6.8428 -1.2844 -4.4955 21 1 8.4331 -2.9694 -3.7796 22 1 6.4285 -2.5628 -2.4769 23 1 -0.3634 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 0.2142 2.3191 0.0005 27 1 1.3303 4.5073 0.0000 28 1 3.7862 4.6521 -0.0005 29 1 5.1475 2.6093 -0.0059 30 1 4.9379 0.8504 -2.5449 31 1 6.2861 -0.0014 -3.3354 32 1 5.0165 -0.9273 -2.4992 33 1 10.0946 -0.8413 -3.3026 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274228607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:54 Heat of formation + Delta-G solvation = -52.337579 kcal Electronic energy + Delta-G solvation = -19844.094919 eV Core-core repulsion = 16643.911574 eV Total energy + Delta-G solvation = -3200.183345 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.53741 -39.17489 -37.39808 -37.24244 -34.98679 -32.20562 -31.51044 -30.17396 -27.59993 -26.71959 -26.25092 -24.16794 -22.33737 -21.63072 -18.95291 -18.02118 -17.21427 -16.71754 -16.37356 -15.92781 -15.75013 -15.44391 -14.76899 -14.55401 -14.29567 -13.74692 -13.57426 -13.36722 -12.71927 -12.62785 -12.47787 -12.27441 -12.15170 -11.96370 -11.67117 -11.25639 -11.21943 -10.66450 -10.50027 -10.32368 -9.94206 -9.26817 -9.06641 -8.36805 -8.28810 -7.97683 -6.50828 -3.99570 0.73949 1.37642 2.57145 2.96536 3.16274 3.17568 3.25169 3.45249 3.77145 3.94430 4.06977 4.63123 4.73567 4.85836 4.95912 4.99790 5.00457 5.15549 5.26283 5.35199 5.49575 5.59566 5.76614 5.86931 5.97731 6.17000 6.20098 6.23613 6.41401 6.67356 7.29302 7.33208 7.77772 8.08508 8.34607 8.78362 9.18427 9.56353 10.60175 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.026530 B = 0.006423 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.170781 B = 4358.034617 C = 4789.120575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.286 6.286 3 C 0.182 3.818 4 C -0.230 4.230 5 C -0.050 4.050 6 C -0.171 4.171 7 C -0.020 4.020 8 C -0.195 4.195 9 C 0.400 3.600 10 O -0.422 6.422 11 C 0.423 3.577 12 O -0.549 6.549 13 N -0.435 5.435 14 C 0.043 3.957 15 C -0.328 4.328 16 H 0.117 0.883 17 C 0.062 3.938 18 N -0.850 5.850 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.260 1.260 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.101 0.899 26 H 0.132 0.868 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.144 0.856 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.139 6.691 -0.260 19.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.197 6.197 3 C 0.134 3.866 4 C -0.248 4.248 5 C -0.068 4.068 6 C -0.190 4.190 7 C -0.038 4.038 8 C -0.198 4.198 9 C 0.272 3.728 10 O -0.293 6.293 11 C 0.210 3.790 12 O -0.432 6.432 13 N -0.155 5.155 14 C -0.101 4.101 15 C -0.455 4.455 16 H 0.134 0.866 17 C -0.146 4.146 18 N -0.485 5.485 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.184 1.184 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.120 0.880 26 H 0.150 0.850 27 H 0.146 0.854 28 H 0.149 0.851 29 H 0.161 0.839 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.841 5.917 0.142 18.797 hybrid contribution -0.631 -0.488 -0.690 1.055 sum -18.472 5.429 -0.548 19.261 Atomic orbital electron populations 1.23147 0.78750 1.04233 1.01155 1.86322 1.20845 1.25841 1.86721 1.19279 0.91127 0.84773 0.91399 1.21176 1.00064 0.92097 1.11495 1.21164 0.94745 0.96908 0.93967 1.21037 0.93646 0.98679 1.05589 1.21489 1.01112 0.90363 0.90874 1.20060 0.90581 0.95836 1.13296 1.22453 0.90271 0.88168 0.71913 1.90614 1.74211 1.30207 1.34313 1.19955 0.87712 0.86323 0.85031 1.90704 1.66091 1.53452 1.32957 1.43347 1.06785 1.62384 1.03012 1.22254 0.97233 1.00978 0.89595 1.19192 0.78715 1.34171 1.13421 0.86564 1.25447 0.95461 0.96752 0.96965 1.69449 1.11219 1.38874 1.28985 0.87097 0.80133 0.82219 0.80215 1.19939 1.21177 1.18390 0.92596 0.92595 0.88032 0.84994 0.85409 0.85063 0.83874 0.92140 0.89274 0.92803 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.29 -4.45 8.58 -40.40 -0.35 -4.80 16 3 C 0.18 2.80 6.71 -38.58 -0.26 2.54 16 4 C -0.23 -2.66 9.03 -39.48 -0.36 -3.01 16 5 C -0.05 -0.52 10.03 -39.48 -0.40 -0.92 16 6 C -0.17 -2.08 10.02 -39.63 -0.40 -2.48 16 7 C -0.02 -0.32 9.46 -39.13 -0.37 -0.69 16 8 C -0.20 -3.51 5.89 -104.78 -0.62 -4.13 16 9 C 0.40 8.81 5.62 -31.76 -0.18 8.63 16 10 O -0.42 -9.92 15.93 -16.54 -0.26 -10.19 16 11 C 0.42 10.67 5.98 -12.05 -0.07 10.60 16 12 O -0.55 -15.55 16.84 5.31 0.09 -15.46 16 13 N -0.43 -11.01 2.72 -123.09 -0.33 -11.34 16 14 C 0.04 0.90 7.41 59.85 0.44 1.35 16 15 C -0.33 -9.30 9.60 -15.18 -0.15 -9.45 16 16 H 0.12 3.65 7.67 -52.49 -0.40 3.25 16 17 C 0.06 1.70 5.23 -17.36 -0.09 1.61 16 18 N -0.85 -24.06 13.93 55.54 0.77 -23.29 16 19 Si 0.88 20.56 24.34 -169.99 -4.14 16.42 16 20 H -0.27 -5.83 6.56 56.52 0.37 -5.46 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.26 -6.27 6.77 56.52 0.38 -5.89 16 23 H 0.06 0.44 7.66 -51.92 -0.40 0.04 16 24 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 25 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.13 1.12 6.30 -52.48 -0.33 0.79 16 27 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 28 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.14 2.43 7.14 -52.49 -0.37 2.06 16 30 H 0.06 1.08 8.04 -51.93 -0.42 0.66 16 31 H 0.09 1.89 4.32 -51.93 -0.22 1.66 16 32 H 0.05 1.11 7.15 -51.93 -0.37 0.74 16 33 H 0.28 7.24 8.30 -40.82 -0.34 6.90 16 LS Contribution 286.07 15.07 4.31 4.31 Total: -1.00 -34.10 286.07 -4.73 -38.82 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -3.37 Total: 0.25 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -1.45 Total: 5.26 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.44 Total: -34.63 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.52 Total: -30.44 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.14 Total: 16.42 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.10 -4.73 -38.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274228607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.515 kcal (2) G-P(sol) polarization free energy of solvation -34.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds