Wall clock time and date at job start Mon Mar 30 2020 00:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00106 * 2 1 4 4 H 1.48497 * 109.47201 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47293 * 300.00371 * 3 2 1 6 6 H 1.48501 * 109.46911 * 59.99899 * 3 2 1 7 7 C 1.37881 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99881 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99978 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47123 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47121 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47134 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47136 * 180.02562 * 12 11 10 14 14 O 1.21379 * 119.99779 * 0.02562 * 13 12 11 15 15 N 1.34325 * 120.00029 * 180.02562 * 13 12 11 16 16 O 1.41601 * 119.99881 * 180.02562 * 15 13 12 17 17 C 1.35744 * 113.99558 * 179.97438 * 16 15 13 18 18 C 1.38845 * 120.06331 * 90.00234 * 17 16 15 19 19 C 1.38123 * 119.92822 * 179.97438 * 18 17 16 20 20 C 1.38279 * 120.06504 * 359.97438 * 19 18 17 21 21 C 1.38280 * 120.13840 * 0.02562 * 20 19 18 22 22 C 1.38113 * 120.06479 * 359.97438 * 21 20 19 23 23 H 0.96999 * 120.00090 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47026 * 60.00070 * 9 7 2 25 25 H 1.08997 * 109.47357 * 300.00411 * 9 7 2 26 26 H 1.09002 * 109.46363 * 60.00376 * 10 9 7 27 27 H 1.08997 * 109.47581 * 300.00569 * 10 9 7 28 28 H 1.09000 * 109.46918 * 60.00433 * 11 10 9 29 29 H 1.09002 * 109.47479 * 300.00307 * 11 10 9 30 30 H 1.09002 * 109.46635 * 60.00335 * 12 11 10 31 31 H 1.09002 * 109.46909 * 300.00315 * 12 11 10 32 32 H 0.97000 * 119.99790 * 359.97438 * 15 13 12 33 33 H 1.07998 * 120.03778 * 359.69442 * 18 17 16 34 34 H 1.08001 * 119.96032 * 179.97438 * 19 18 17 35 35 H 1.08001 * 119.92711 * 180.02562 * 20 19 18 36 36 H 1.07998 * 119.97033 * 180.02562 * 21 20 19 37 37 H 1.08006 * 120.03724 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1501 -0.0018 13 6 1.7211 -7.4552 -0.0018 14 8 0.5073 -7.4551 -0.0018 15 7 2.3927 -8.6185 -0.0018 16 8 1.6846 -9.8447 -0.0024 17 6 2.4826 -10.9429 -0.0029 18 6 2.8914 -11.5062 1.1985 19 6 3.7029 -12.6239 1.1948 20 6 4.1076 -13.1821 -0.0038 21 6 3.7021 -12.6233 -1.2019 22 6 2.8906 -11.5057 -1.2047 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8725 -3.6047 0.8878 27 1 2.8714 -3.6040 -0.8922 28 1 0.8527 -5.0447 -0.8905 29 1 0.8546 -5.0450 0.8895 30 1 3.1018 -6.0922 0.8878 31 1 3.1006 -6.0923 -0.8923 32 1 3.3627 -8.6184 -0.0022 33 1 2.5790 -11.0682 2.1350 34 1 4.0215 -13.0622 2.1290 35 1 4.7418 -14.0563 -0.0042 36 1 4.0194 -13.0618 -2.1365 37 1 2.5745 -11.0694 -2.1407 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854536607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:13:47 Heat of formation + Delta-G solvation = -19.467318 kcal Electronic energy + Delta-G solvation = -18135.069536 eV Core-core repulsion = 15072.144647 eV Total energy + Delta-G solvation = -3062.924889 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.28815 -39.23749 -37.25322 -34.88140 -32.92382 -32.41142 -31.49899 -30.15075 -29.25838 -25.60820 -23.18159 -22.95796 -22.39651 -20.53217 -19.99932 -19.05388 -17.07408 -16.85440 -16.31476 -16.14341 -15.66773 -15.56254 -14.52323 -14.36207 -14.09101 -13.95260 -13.88007 -13.01972 -12.88537 -12.64242 -12.17135 -12.08333 -11.73192 -11.61896 -11.29037 -10.99618 -10.55775 -10.48078 -10.42766 -10.07755 -9.61639 -9.51040 -9.36328 -9.14753 -9.11573 -8.95825 -8.29823 -5.94349 -3.96856 0.29483 0.83903 2.08043 2.68587 3.32730 3.33935 3.41140 3.44915 4.08357 4.41453 4.45045 4.49602 4.62250 4.70455 4.87155 5.00032 5.23026 5.29857 5.34317 5.41083 5.47526 5.75621 5.82748 5.92124 5.95330 6.11174 6.24217 6.26214 6.52427 6.82437 6.86665 7.01813 7.18527 7.24697 7.75411 7.90790 8.07115 8.26835 8.48525 9.11131 9.66796 11.16996 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.058059 B = 0.002456 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.149056 B =11395.885732 C =11556.393933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.123 4.123 13 C 0.520 3.480 14 O -0.516 6.516 15 N -0.597 5.597 16 O -0.100 6.100 17 C 0.038 3.962 18 C -0.104 4.104 19 C -0.118 4.118 20 C -0.103 4.103 21 C -0.118 4.118 22 C -0.104 4.104 23 H 0.259 0.741 24 H 0.016 0.984 25 H 0.017 0.983 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.406 0.594 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.569 -27.033 -0.007 29.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.147 4.147 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.164 4.164 13 C 0.308 3.692 14 O -0.389 6.389 15 N -0.306 5.306 16 O -0.092 6.092 17 C -0.007 4.007 18 C -0.124 4.124 19 C -0.136 4.136 20 C -0.122 4.122 21 C -0.136 4.136 22 C -0.124 4.124 23 H 0.069 0.931 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.246 0.754 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 10.243 -26.902 -0.007 28.786 hybrid contribution 0.980 0.609 -0.001 1.154 sum 11.223 -26.293 -0.008 28.588 Atomic orbital electron populations 1.69986 1.06043 1.26406 1.50988 1.25053 0.94846 0.99261 0.95494 0.86552 0.80057 0.83930 0.77536 1.19790 1.21070 1.21065 1.21311 0.93009 0.91158 1.50293 0.92684 1.19108 0.94076 0.91235 0.97421 1.21652 0.99116 0.93760 1.00210 1.21516 0.97002 0.92327 1.03399 1.21805 1.00161 0.89802 1.04601 1.21429 0.89186 0.83050 0.75550 1.90776 1.13945 1.86297 1.47840 1.48398 1.07475 0.95476 1.79283 1.89241 1.19375 1.04480 1.96061 1.19055 0.98378 0.90257 0.92979 1.21677 0.95981 0.96564 0.98167 1.21149 0.97837 0.95922 0.98676 1.21370 0.98899 0.99458 0.92442 1.21146 0.97849 0.95905 0.98681 1.21674 0.95982 0.96575 0.98161 0.93091 0.96515 0.96507 0.93341 0.93330 0.91472 0.91478 0.88550 0.88556 0.75425 0.84888 0.85123 0.85344 0.85123 0.84888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.56 13.29 55.43 0.74 -26.82 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 10 C -0.11 -2.22 5.15 -26.73 -0.14 -2.35 16 11 C -0.10 -1.84 4.50 -26.73 -0.12 -1.96 16 12 C -0.12 -1.58 5.69 -27.88 -0.16 -1.74 16 13 C 0.52 7.70 7.96 -11.19 -0.09 7.62 16 14 O -0.52 -10.29 16.39 -12.85 -0.21 -10.50 16 15 N -0.60 -7.06 6.32 31.15 0.20 -6.86 16 16 O -0.10 -1.35 10.98 -13.50 -0.15 -1.50 16 17 C 0.04 0.39 5.81 -39.14 -0.23 0.16 16 18 C -0.10 -0.86 9.99 -39.40 -0.39 -1.26 16 19 C -0.12 -0.74 10.04 -39.61 -0.40 -1.13 16 20 C -0.10 -0.58 10.04 -39.55 -0.40 -0.98 16 21 C -0.12 -0.74 10.04 -39.61 -0.40 -1.13 16 22 C -0.10 -0.86 9.99 -39.41 -0.39 -1.26 16 23 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 29 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 30 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.41 3.26 8.51 -40.82 -0.35 2.92 16 33 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 35 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 36 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 37 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 326.51 15.07 4.92 4.92 Total: -1.00 -35.70 326.51 -8.17 -43.87 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -5.38 Total: -2.56 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -3.26 Total: -17.41 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.93 Total: -33.69 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -0.36 Total: -12.00 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.70 -8.17 -43.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854536607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.400 kcal (2) G-P(sol) polarization free energy of solvation -35.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds