Wall clock time and date at job start Mon Mar 30 2020 00:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47168 * 287.38620 * 3 2 1 5 5 C 1.36928 * 120.00291 * 268.89299 * 4 3 2 6 6 H 1.07993 * 119.99999 * 199.86825 * 5 4 3 7 7 C 1.38980 * 119.99855 * 19.87207 * 5 4 3 8 8 N 1.31419 * 120.00520 * 25.79491 * 7 5 4 9 9 Si 1.86805 * 119.99945 * 205.79945 * 7 5 4 10 10 H 1.48506 * 109.46985 * 89.99972 * 9 7 5 11 11 H 1.48505 * 109.47117 * 209.99711 * 9 7 5 12 12 H 1.48494 * 109.46819 * 329.99791 * 9 7 5 13 13 C 1.34783 * 119.99563 * 88.89120 * 4 3 2 14 14 O 1.21776 * 119.99626 * 185.46130 * 13 4 3 15 15 C 1.41679 * 120.00088 * 5.46083 * 13 4 3 16 16 C 1.33556 * 118.79293 * 80.95706 * 15 13 4 17 17 C 1.50699 * 118.47277 * 0.36558 * 16 15 13 18 18 C 1.52992 * 109.47300 * 96.11768 * 17 16 15 19 19 O 1.34455 * 123.08182 * 180.37698 * 16 15 13 20 20 C 1.45355 * 117.42099 * 343.69645 * 19 16 15 21 21 C 1.53476 * 108.30395 * 47.48030 * 20 19 16 22 22 C 1.50423 * 118.79114 * 260.93275 * 15 13 4 23 23 H 4.40648 * 5.51358 * 179.97438 * 4 1 2 24 24 H 1.08995 * 109.46935 * 167.39247 * 3 2 1 25 25 H 1.08993 * 109.47129 * 47.38732 * 3 2 1 26 26 H 0.96999 * 120.00294 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47127 * 216.12702 * 17 16 15 28 28 H 1.09007 * 109.46523 * 336.11909 * 17 16 15 29 29 H 1.09001 * 109.47516 * 179.97438 * 18 17 16 30 30 H 1.08993 * 109.47841 * 300.00314 * 18 17 16 31 31 H 1.09005 * 109.46719 * 60.00436 * 18 17 16 32 32 H 1.08993 * 109.70625 * 287.76477 * 20 19 16 33 33 H 1.09003 * 109.69974 * 167.18764 * 20 19 16 34 34 H 1.08999 * 109.70770 * 56.92985 * 21 20 19 35 35 H 1.08994 * 109.70719 * 177.50768 * 21 20 19 36 36 H 1.09002 * 109.45191 * 42.32305 * 22 15 13 37 37 H 1.08999 * 109.43980 * 282.36779 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.4119 1.3181 5 6 3.3840 0.5291 2.2812 6 1 4.0281 0.2910 3.1146 7 6 2.8081 1.7903 2.1860 8 7 1.6832 1.9511 1.5257 9 14 3.6330 3.2573 2.9966 10 1 4.5752 3.8878 2.0373 11 1 2.6005 4.2461 3.3987 12 1 4.3790 2.8042 4.1979 13 6 3.3385 -1.7176 1.5828 14 8 3.6485 -2.0698 2.7066 15 6 3.1921 -2.6803 0.5538 16 6 4.1998 -2.8642 -0.3032 17 6 5.4507 -2.0422 -0.1282 18 6 6.4817 -2.8454 0.6671 19 8 4.1508 -3.7484 -1.3150 20 6 3.1193 -4.7710 -1.2609 21 6 1.7849 -4.0924 -0.9225 22 6 1.9075 -3.4582 0.4668 23 1 -1.0499 0.0002 0.0001 24 1 3.0089 1.0037 -0.2243 25 1 3.0096 -0.6949 -0.7563 26 1 1.2811 2.8313 1.4596 27 1 5.8609 -1.7922 -1.1067 28 1 5.2105 -1.1253 0.4101 29 1 7.3867 -2.2510 0.7932 30 1 6.0716 -3.0954 1.6455 31 1 6.7219 -3.7623 0.1287 32 1 3.3659 -5.5014 -0.4903 33 1 3.0438 -5.2683 -2.2279 34 1 1.5674 -3.3206 -1.6608 35 1 0.9859 -4.8337 -0.9195 36 1 1.0649 -2.7876 0.6354 37 1 1.9057 -4.2414 1.2248 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491694271.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:15:58 Heat of formation + Delta-G solvation = 6.106421 kcal Electronic energy + Delta-G solvation = -20911.172684 eV Core-core repulsion = 17849.356756 eV Total energy + Delta-G solvation = -3061.815928 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.23426 -38.24501 -35.06457 -33.89952 -33.55105 -31.87325 -31.14826 -29.79014 -26.37373 -25.65628 -24.92863 -23.73270 -21.53142 -20.36737 -18.11099 -17.73936 -16.78284 -16.36627 -15.87317 -15.42700 -14.71204 -14.32880 -14.17243 -13.66298 -13.55603 -13.37614 -13.14029 -12.66584 -12.53927 -12.16619 -12.09225 -11.67980 -11.62907 -11.47416 -11.00944 -10.86540 -10.66586 -10.59141 -10.44517 -10.31177 -10.05053 -9.23589 -9.13285 -8.85304 -8.42429 -7.80759 -7.61646 -6.26094 -3.80827 2.40517 3.16287 3.27814 3.32364 3.52390 3.71244 4.04845 4.17411 4.26396 4.88218 4.95807 5.03840 5.16055 5.26659 5.34210 5.50279 5.55076 5.63313 5.66309 5.71455 5.86786 5.91165 6.05393 6.19236 6.24480 6.35056 6.39648 6.45840 6.59135 6.64584 6.70573 6.87211 7.11066 7.60572 7.80057 8.14404 8.48630 8.97328 9.18749 9.40998 9.99441 10.69950 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.022293 B = 0.008027 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.722653 B = 3487.193268 C = 4200.045838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.103 4.103 3 C 0.235 3.765 4 N -0.435 5.435 5 C -0.321 4.321 6 H 0.103 0.897 7 C 0.035 3.965 8 N -0.848 5.848 9 Si 0.914 3.086 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.507 3.493 14 O -0.584 6.584 15 C -0.244 4.244 16 C 0.099 3.901 17 C -0.086 4.086 18 C -0.143 4.143 19 O -0.317 6.317 20 C 0.060 3.940 21 C -0.154 4.154 22 C -0.061 4.061 23 H 0.196 0.804 24 H 0.092 0.908 25 H 0.067 0.933 26 H 0.267 0.733 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.916 -7.781 -8.431 11.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.105 4.105 3 C 0.111 3.889 4 N -0.153 5.153 5 C -0.448 4.448 6 H 0.121 0.879 7 C -0.171 4.171 8 N -0.485 5.485 9 Si 0.741 3.259 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.194 1.194 13 C 0.297 3.703 14 O -0.469 6.469 15 C -0.249 4.249 16 C 0.052 3.948 17 C -0.123 4.123 18 C -0.200 4.200 19 O -0.231 6.231 20 C -0.014 4.014 21 C -0.192 4.192 22 C -0.099 4.099 23 H 0.213 0.787 24 H 0.110 0.890 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.119 0.881 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.094 -7.779 -8.070 11.403 hybrid contribution -0.456 0.878 0.537 1.126 sum 1.637 -6.901 -7.533 10.347 Atomic orbital electron populations 1.24106 0.95197 1.05767 1.03227 1.22941 0.94153 0.95941 0.97417 1.18101 0.84743 1.00433 0.85584 1.43791 1.56073 1.04697 1.10775 1.19595 1.27937 0.90675 1.06621 0.87932 1.25306 0.94488 0.99502 0.97798 1.70161 1.13581 1.23497 1.41229 0.86124 0.79114 0.81042 0.79660 1.20350 1.21219 1.19394 1.16374 0.83975 0.82100 0.87864 1.90659 1.53012 1.79810 1.23377 1.19999 0.97236 1.05852 1.01780 1.20868 0.94928 0.91214 0.87761 1.20738 0.91621 0.98373 1.01555 1.21680 0.98027 0.99555 1.00750 1.86123 1.53570 1.40628 1.42789 1.23341 0.86763 0.88849 1.02477 1.22166 0.97333 1.01079 0.98604 1.20127 0.95286 0.98573 0.95903 0.78728 0.88972 0.91516 0.92236 0.90639 0.88074 0.92239 0.91646 0.92983 0.91717 0.88186 0.90504 0.90252 0.90199 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.66 19.08 29.55 0.56 -5.10 16 2 C -0.10 -2.36 10.87 -37.12 -0.40 -2.77 16 3 C 0.23 5.31 4.89 -6.83 -0.03 5.28 16 4 N -0.44 -11.00 1.88 -121.16 -0.23 -11.23 16 5 C -0.32 -8.81 9.21 -15.00 -0.14 -8.95 16 6 H 0.10 2.97 7.50 -52.49 -0.39 2.58 16 7 C 0.03 0.91 4.74 -17.45 -0.08 0.82 16 8 N -0.85 -22.46 9.47 55.50 0.53 -21.93 16 9 Si 0.91 20.41 29.62 -169.99 -5.04 15.38 16 10 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 C 0.51 12.58 4.92 -14.94 -0.07 12.51 16 14 O -0.58 -16.68 16.79 5.12 0.09 -16.60 16 15 C -0.24 -4.97 3.90 -105.08 -0.41 -5.38 16 16 C 0.10 1.79 5.03 -35.95 -0.18 1.61 16 17 C -0.09 -1.47 5.75 -27.89 -0.16 -1.63 16 18 C -0.14 -2.26 9.89 37.15 0.37 -1.89 16 19 O -0.32 -5.04 10.41 -15.18 -0.16 -5.20 16 20 C 0.06 0.75 7.15 37.40 0.27 1.02 16 21 C -0.15 -2.05 6.23 -26.38 -0.16 -2.21 16 22 C -0.06 -1.08 5.89 -27.91 -0.16 -1.25 16 23 H 0.20 3.46 7.80 -54.09 -0.42 3.04 16 24 H 0.09 2.14 7.06 -51.93 -0.37 1.78 16 25 H 0.07 1.34 6.09 -51.93 -0.32 1.03 16 26 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.10 2.00 5.85 -51.93 -0.30 1.70 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.54 7.97 -51.93 -0.41 1.13 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 310.92 15.07 4.69 4.69 Total: -1.00 -31.67 310.92 -5.89 -37.57 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -5.16 Total: 5.26 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -0.61 Total: -7.93 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.30 Total: -33.16 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.07 Total: -21.80 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.04 Total: 15.38 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.67 -5.89 -37.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491694271.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.673 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds