Wall clock time and date at job start Mon Mar 30 2020 00:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47168 * 287.38620 * 3 2 1 5 5 C 1.36928 * 120.00291 * 268.89299 * 4 3 2 6 6 H 1.07993 * 119.99999 * 199.86825 * 5 4 3 7 7 C 1.38980 * 119.99855 * 19.87207 * 5 4 3 8 8 N 1.31419 * 120.00520 * 25.79491 * 7 5 4 9 9 Si 1.86805 * 119.99945 * 205.79945 * 7 5 4 10 10 H 1.48506 * 109.46985 * 89.99972 * 9 7 5 11 11 H 1.48505 * 109.47117 * 209.99711 * 9 7 5 12 12 H 1.48494 * 109.46819 * 329.99791 * 9 7 5 13 13 C 1.34783 * 119.99563 * 88.89120 * 4 3 2 14 14 O 1.21776 * 119.99626 * 185.46130 * 13 4 3 15 15 C 1.41679 * 120.00088 * 5.46083 * 13 4 3 16 16 C 1.33556 * 118.79293 * 80.95706 * 15 13 4 17 17 C 1.50699 * 118.47277 * 0.36558 * 16 15 13 18 18 C 1.52992 * 109.47300 * 96.11768 * 17 16 15 19 19 O 1.34455 * 123.08182 * 180.37698 * 16 15 13 20 20 C 1.45355 * 117.42099 * 343.69645 * 19 16 15 21 21 C 1.53476 * 108.30395 * 47.48030 * 20 19 16 22 22 C 1.50423 * 118.79114 * 260.93275 * 15 13 4 23 23 H 4.40648 * 5.51358 * 179.97438 * 4 1 2 24 24 H 1.08995 * 109.46935 * 167.39247 * 3 2 1 25 25 H 1.08993 * 109.47129 * 47.38732 * 3 2 1 26 26 H 0.96999 * 120.00294 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47127 * 216.12702 * 17 16 15 28 28 H 1.09007 * 109.46523 * 336.11909 * 17 16 15 29 29 H 1.09001 * 109.47516 * 179.97438 * 18 17 16 30 30 H 1.08993 * 109.47841 * 300.00314 * 18 17 16 31 31 H 1.09005 * 109.46719 * 60.00436 * 18 17 16 32 32 H 1.08993 * 109.70625 * 287.76477 * 20 19 16 33 33 H 1.09003 * 109.69974 * 167.18764 * 20 19 16 34 34 H 1.08999 * 109.70770 * 56.92985 * 21 20 19 35 35 H 1.08994 * 109.70719 * 177.50768 * 21 20 19 36 36 H 1.09002 * 109.45191 * 42.32305 * 22 15 13 37 37 H 1.08999 * 109.43980 * 282.36779 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.4119 1.3181 5 6 3.3840 0.5291 2.2812 6 1 4.0281 0.2910 3.1146 7 6 2.8081 1.7903 2.1860 8 7 1.6832 1.9511 1.5257 9 14 3.6330 3.2573 2.9966 10 1 4.5752 3.8878 2.0373 11 1 2.6005 4.2461 3.3987 12 1 4.3790 2.8042 4.1979 13 6 3.3385 -1.7176 1.5828 14 8 3.6485 -2.0698 2.7066 15 6 3.1921 -2.6803 0.5538 16 6 4.1998 -2.8642 -0.3032 17 6 5.4507 -2.0422 -0.1282 18 6 6.4817 -2.8454 0.6671 19 8 4.1508 -3.7484 -1.3150 20 6 3.1193 -4.7710 -1.2609 21 6 1.7849 -4.0924 -0.9225 22 6 1.9075 -3.4582 0.4668 23 1 -1.0499 0.0002 0.0001 24 1 3.0089 1.0037 -0.2243 25 1 3.0096 -0.6949 -0.7563 26 1 1.2811 2.8313 1.4596 27 1 5.8609 -1.7922 -1.1067 28 1 5.2105 -1.1253 0.4101 29 1 7.3867 -2.2510 0.7932 30 1 6.0716 -3.0954 1.6455 31 1 6.7219 -3.7623 0.1287 32 1 3.3659 -5.5014 -0.4903 33 1 3.0438 -5.2683 -2.2279 34 1 1.5674 -3.3206 -1.6608 35 1 0.9859 -4.8337 -0.9195 36 1 1.0649 -2.7876 0.6354 37 1 1.9057 -4.2414 1.2248 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491694271.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:15:58 Heat of formation + Delta-G solvation = -12.677689 kcal Electronic energy + Delta-G solvation = -20911.987224 eV Core-core repulsion = 17849.356756 eV Total energy + Delta-G solvation = -3062.630469 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.74319 -39.90903 -37.01917 -35.22072 -35.00330 -33.75481 -33.00276 -31.13392 -28.22351 -27.17005 -26.45912 -25.25302 -22.90329 -21.93778 -19.72813 -19.43531 -18.45764 -18.20206 -17.24595 -17.02458 -16.37529 -15.93069 -15.80544 -15.22040 -15.03830 -14.73211 -14.48827 -14.25244 -13.96882 -13.92659 -13.88922 -13.53328 -12.96559 -12.80881 -12.75660 -12.45509 -12.18091 -12.14520 -12.01278 -11.69849 -11.37013 -11.10484 -11.00850 -10.64526 -10.34451 -9.81224 -9.10522 -8.27107 -5.90570 0.93450 1.35785 1.42571 1.53844 1.86449 2.17515 2.34379 2.37461 2.45424 3.04458 3.38474 3.72278 3.84943 3.94832 3.97326 4.19121 4.22608 4.32674 4.43251 4.46369 4.56342 4.64400 4.69987 4.78440 4.83181 4.91255 4.94912 5.08128 5.18588 5.24945 5.34813 5.39171 5.43844 5.49999 6.08797 6.45667 6.50352 7.16920 7.23426 7.43957 8.04018 8.66571 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.022293 B = 0.008027 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.722653 B = 3487.193268 C = 4200.045838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.143 4.143 3 C 0.244 3.756 4 N -0.442 5.442 5 C -0.357 4.357 6 H 0.073 0.927 7 C 0.006 3.994 8 N -0.860 5.860 9 Si 0.979 3.021 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.507 3.493 14 O -0.637 6.637 15 C -0.283 4.283 16 C 0.130 3.870 17 C -0.093 4.093 18 C -0.135 4.135 19 O -0.315 6.315 20 C 0.054 3.946 21 C -0.143 4.143 22 C -0.059 4.059 23 H 0.229 0.771 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.271 0.729 27 H 0.105 0.895 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.144 0.856 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.054 0.946 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.791 -8.379 -10.683 13.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.145 4.145 3 C 0.121 3.879 4 N -0.159 5.159 5 C -0.485 4.485 6 H 0.091 0.909 7 C -0.199 4.199 8 N -0.496 5.496 9 Si 0.803 3.197 10 H -0.187 1.187 11 H -0.205 1.205 12 H -0.202 1.202 13 C 0.299 3.701 14 O -0.526 6.526 15 C -0.287 4.287 16 C 0.081 3.919 17 C -0.130 4.130 18 C -0.193 4.193 19 O -0.228 6.228 20 C -0.019 4.019 21 C -0.181 4.181 22 C -0.097 4.097 23 H 0.245 0.755 24 H 0.098 0.902 25 H 0.105 0.895 26 H 0.081 0.919 27 H 0.124 0.876 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.162 0.838 34 H 0.093 0.907 35 H 0.131 0.869 36 H 0.072 0.928 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.950 -8.377 -10.368 13.471 hybrid contribution -0.449 1.022 1.208 1.645 sum 1.501 -7.355 -9.160 11.843 Atomic orbital electron populations 1.24941 0.96142 1.04140 1.01497 1.23224 0.94807 0.97447 0.98985 1.18046 0.85013 1.00104 0.84748 1.43920 1.55901 1.04743 1.11302 1.19484 1.29160 0.92455 1.07362 0.90936 1.26002 0.94594 1.01062 0.98213 1.70251 1.13842 1.24117 1.41384 0.85163 0.78276 0.77619 0.78643 1.18708 1.20490 1.20247 1.17019 0.82258 0.82594 0.88191 1.90599 1.55298 1.80713 1.26010 1.19830 0.99788 1.06821 1.02294 1.20858 0.93960 0.90441 0.86601 1.20805 0.91995 0.97334 1.02901 1.21617 0.98034 1.00698 0.98913 1.86132 1.54785 1.40607 1.41291 1.23765 0.85043 0.87856 1.05266 1.22146 0.99103 1.01587 0.95223 1.20112 0.92963 0.97766 0.98869 0.75460 0.90237 0.89465 0.91875 0.87635 0.91249 0.90402 0.95031 0.90663 0.90929 0.83841 0.90726 0.86876 0.92769 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.42 19.08 74.32 1.42 -9.00 16 2 C -0.14 -6.61 10.87 31.13 0.34 -6.27 16 3 C 0.24 11.26 4.89 84.57 0.41 11.67 16 4 N -0.44 -23.33 1.88 -655.42 -1.23 -24.56 16 5 C -0.36 -20.58 9.21 84.08 0.77 -19.80 16 6 H 0.07 4.51 7.50 -2.91 -0.02 4.49 16 7 C 0.01 0.32 4.74 84.93 0.40 0.73 16 8 N -0.86 -45.83 9.47 21.67 0.21 -45.62 16 9 Si 0.98 42.49 29.62 68.60 2.03 44.52 16 10 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 11 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 12 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 13 C 0.51 26.47 4.92 85.09 0.42 26.89 16 14 O -0.64 -38.88 16.79 -4.59 -0.08 -38.96 16 15 C -0.28 -11.68 3.90 -20.16 -0.08 -11.76 16 16 C 0.13 4.57 5.03 24.62 0.12 4.69 16 17 C -0.09 -3.16 5.75 29.85 0.17 -2.99 16 18 C -0.14 -4.20 9.89 71.98 0.71 -3.49 16 19 O -0.32 -9.04 10.41 -77.22 -0.80 -9.85 16 20 C 0.05 1.14 7.15 72.14 0.52 1.66 16 21 C -0.14 -3.41 6.23 30.82 0.19 -3.21 16 22 C -0.06 -2.09 5.89 29.83 0.18 -1.91 16 23 H 0.23 7.56 7.80 -4.42 -0.03 7.52 16 24 H 0.08 3.80 7.06 -2.39 -0.02 3.78 16 25 H 0.09 3.55 6.09 -2.39 -0.01 3.54 16 26 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 27 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 28 H 0.07 2.84 5.85 -2.38 -0.01 2.82 16 29 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.05 2.14 7.97 -2.39 -0.02 2.12 16 37 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -72.19 310.92 6.76 -65.44 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 1.05 Total: 21.83 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 5.58 Total: -12.80 kcal Atomic # 7 Polarization: -69.15 SS G_CDS: -1.02 Total: -70.18 kcal Atomic # 8 Polarization: -47.92 SS G_CDS: -0.88 Total: -48.81 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -72.19 6.76 -65.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491694271.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.757 kcal (2) G-P(sol) polarization free energy of solvation -72.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds