Wall clock time and date at job start Sun Mar 29 2020 23:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47170 * 2 1 4 4 H 1.09003 * 109.46585 * 305.00016 * 3 2 1 5 5 C 1.53000 * 109.47300 * 64.99929 * 3 2 1 6 6 C 1.50698 * 109.47378 * 185.00162 * 3 2 1 7 7 O 1.21293 * 119.99553 * 359.97438 * 6 3 2 8 8 N 1.34776 * 120.00332 * 180.27255 * 6 3 2 9 9 C 1.39989 * 120.00128 * 175.20473 * 8 6 3 10 10 C 1.38917 * 120.00204 * 214.85057 * 9 8 6 11 11 C 1.38002 * 119.99788 * 179.74445 * 10 9 8 12 12 C 1.38907 * 120.00151 * 0.50817 * 11 10 9 13 13 O 1.35780 * 119.99872 * 179.74363 * 12 11 10 14 14 C 1.34813 * 116.99886 * 185.37118 * 13 12 11 15 15 H 1.08006 * 119.99981 * 354.96633 * 14 13 12 16 16 C 1.38630 * 120.00098 * 174.96437 * 14 13 12 17 17 N 1.31573 * 119.99798 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00052 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47186 * 60.00008 * 18 16 14 20 20 H 1.48498 * 109.46994 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46656 * 299.99745 * 18 16 14 22 22 C 1.38912 * 120.00187 * 359.76905 * 12 11 10 23 23 C 1.37996 * 120.00162 * 359.97438 * 22 12 11 24 24 H 1.08997 * 109.46870 * 300.00213 * 1 2 3 25 25 H 1.08993 * 109.47174 * 60.00019 * 1 2 3 26 26 H 1.08999 * 109.47074 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46870 * 239.99787 * 2 1 3 28 28 H 1.09003 * 109.47037 * 120.00010 * 2 1 3 29 29 H 1.09004 * 109.46898 * 300.00396 * 5 3 2 30 30 H 1.09001 * 109.46965 * 60.00012 * 5 3 2 31 31 H 1.09001 * 109.47261 * 180.02562 * 5 3 2 32 32 H 0.96997 * 119.99528 * 355.20940 * 8 6 3 33 33 H 1.07999 * 120.00132 * 359.97438 * 10 9 8 34 34 H 1.07999 * 120.00011 * 180.25810 * 11 10 9 35 35 H 0.96998 * 119.99706 * 180.02562 * 17 16 14 36 36 H 1.08002 * 119.99753 * 179.97438 * 22 12 11 37 37 H 1.08003 * 120.00188 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5419 1.4443 -0.1239 7 8 4.1451 0.3950 -0.2038 8 7 4.2154 2.6116 -0.1398 9 6 5.6152 2.6120 -0.1536 10 6 6.3162 3.6049 0.5191 11 6 7.6962 3.6022 0.5099 12 6 8.3842 2.6127 -0.1808 13 8 9.7420 2.6130 -0.1941 14 6 10.3466 1.6933 -0.9725 15 1 9.7567 0.9479 -1.4852 16 6 11.7255 1.7042 -1.1148 17 7 12.4442 2.6119 -0.4898 18 14 12.5633 0.4301 -2.1939 19 1 12.0581 0.5505 -3.5851 20 1 14.0308 0.6569 -2.1793 21 1 12.2669 -0.9296 -1.6754 22 6 7.6833 1.6231 -0.8582 23 6 6.3034 1.6227 -0.8447 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.5489 2.1252 1.3969 30 1 2.0699 1.5875 2.1491 31 1 1.9982 3.1544 1.3071 32 1 3.7301 3.4515 -0.1417 33 1 5.7813 4.3768 1.0524 34 1 8.2413 4.3717 1.0364 35 1 13.4090 2.6198 -0.5896 36 1 8.2183 0.8540 -1.3956 37 1 5.7583 0.8535 -1.3718 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028435858.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:34 Heat of formation + Delta-G solvation = -50.421338 kcal Electronic energy + Delta-G solvation = -19099.223532 eV Core-core repulsion = 16034.956376 eV Total energy + Delta-G solvation = -3064.267156 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.28161 -38.73622 -36.71445 -35.40908 -33.94779 -32.16930 -30.21631 -30.06704 -27.78551 -25.57262 -25.11515 -22.73033 -21.99296 -20.76762 -19.66373 -18.09358 -17.57283 -16.69886 -16.37756 -15.57423 -14.88056 -14.58225 -14.44215 -13.93733 -13.66721 -13.57077 -13.54195 -12.94619 -12.86332 -12.54289 -12.37727 -11.94366 -11.75362 -11.67860 -11.52777 -11.45179 -11.01917 -10.98049 -10.87099 -10.73095 -10.43567 -9.65100 -9.57933 -9.12906 -8.67496 -8.18751 -6.91707 -6.42690 -4.00381 2.10797 2.23587 2.87617 3.16216 3.17389 3.19700 3.35405 3.99667 4.51432 4.56241 4.67387 4.74101 5.09807 5.12306 5.16444 5.26846 5.27727 5.34368 5.57555 5.65992 5.69298 5.75188 5.77778 5.87307 6.05101 6.16114 6.17160 6.22133 6.36911 6.75178 6.87857 7.03245 7.12063 7.32496 7.45997 7.72687 7.81479 8.02505 8.42148 9.03074 9.72560 10.75263 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.038066 B = 0.003764 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.397014 B = 7436.476254 C = 8061.635066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C -0.109 4.109 4 H 0.095 0.905 5 C -0.145 4.145 6 C 0.507 3.493 7 O -0.527 6.527 8 N -0.661 5.661 9 C 0.033 3.967 10 C -0.094 4.094 11 C -0.178 4.178 12 C 0.146 3.854 13 O -0.177 6.177 14 C -0.391 4.391 15 H 0.092 0.908 16 C 0.039 3.961 17 N -0.864 5.864 18 Si 0.941 3.059 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.269 1.269 22 C -0.221 4.221 23 C -0.065 4.065 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.401 0.599 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.270 0.730 36 H 0.130 0.870 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.528 0.192 0.667 20.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.144 4.144 3 C -0.131 4.131 4 H 0.113 0.887 5 C -0.203 4.203 6 C 0.294 3.706 7 O -0.402 6.402 8 N -0.305 5.305 9 C -0.059 4.059 10 C -0.114 4.114 11 C -0.198 4.198 12 C 0.092 3.908 13 O -0.080 6.080 14 C -0.467 4.467 15 H 0.109 0.891 16 C -0.165 4.165 17 N -0.499 5.499 18 Si 0.765 3.235 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.195 1.195 22 C -0.241 4.241 23 C -0.085 4.085 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.235 0.765 33 H 0.132 0.868 34 H 0.139 0.861 35 H 0.080 0.920 36 H 0.148 0.852 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.689 -0.376 0.765 19.707 hybrid contribution 0.187 -0.177 -0.544 0.602 sum -19.502 -0.554 0.221 19.511 Atomic orbital electron populations 1.21843 0.95603 1.01835 1.01744 1.21342 0.95150 0.94240 1.03680 1.21337 0.91857 0.99445 1.00424 0.88682 1.21831 1.02098 1.00291 0.96052 1.20733 0.89843 0.83690 0.76332 1.90701 1.69870 1.31414 1.48256 1.43250 1.05347 1.08641 1.73282 1.17288 0.81283 1.01374 1.05967 1.20355 0.93342 0.98598 0.99085 1.19990 0.92675 1.00705 1.06464 1.19409 0.85038 0.92914 0.93419 1.83972 1.12813 1.52285 1.58955 1.21293 0.90365 1.09059 1.26022 0.89085 1.25278 0.95361 0.98093 0.97746 1.70037 1.06693 1.32944 1.40211 0.85784 0.78231 0.79775 0.79687 1.19484 1.20290 1.19456 1.21111 0.93662 1.02216 1.07074 1.20854 0.93512 0.97439 0.96664 0.92493 0.92775 0.92520 0.91057 0.91235 0.91281 0.91949 0.92163 0.76503 0.86789 0.86081 0.91992 0.85232 0.85762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.67 37.16 0.36 -0.73 16 2 C -0.11 -1.04 4.75 -26.73 -0.13 -1.17 16 3 C -0.11 -1.04 2.72 -91.77 -0.25 -1.29 16 4 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 5 C -0.15 -1.11 8.85 37.16 0.33 -0.78 16 6 C 0.51 7.20 7.00 -10.99 -0.08 7.12 16 7 O -0.53 -9.77 13.36 5.55 0.07 -9.70 16 8 N -0.66 -9.10 5.19 -9.82 -0.05 -9.15 16 9 C 0.03 0.60 6.30 -83.63 -0.53 0.07 16 10 C -0.09 -1.66 9.96 -39.42 -0.39 -2.05 16 11 C -0.18 -3.77 9.98 -39.42 -0.39 -4.16 16 12 C 0.15 3.61 6.65 -39.08 -0.26 3.35 16 13 O -0.18 -5.11 9.76 0.00 0.00 -5.11 16 14 C -0.39 -11.14 9.48 30.88 0.29 -10.84 16 15 H 0.09 2.42 5.20 -52.48 -0.27 2.14 16 16 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 17 N -0.86 -25.57 13.67 55.48 0.76 -24.81 16 18 Si 0.94 20.88 29.55 -169.99 -5.02 15.86 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 22 C -0.22 -5.09 9.16 -39.42 -0.36 -5.45 16 23 C -0.06 -1.34 8.69 -39.42 -0.34 -1.68 16 24 H 0.06 0.35 6.56 -51.93 -0.34 0.01 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.79 7.96 -51.93 -0.41 0.38 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.41 6.56 -51.93 -0.34 0.07 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 32 H 0.40 3.98 8.37 -40.82 -0.34 3.64 16 33 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 35 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.13 3.00 5.63 -52.49 -0.30 2.71 16 37 H 0.12 2.55 6.23 -52.48 -0.33 2.22 16 LS Contribution 310.87 15.07 4.68 4.68 Total: -1.00 -33.04 310.87 -6.23 -39.27 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -4.82 Total: 5.57 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -1.85 Total: -16.61 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.71 Total: -33.96 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: 0.07 Total: -14.81 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.04 -6.23 -39.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028435858.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.153 kcal (2) G-P(sol) polarization free energy of solvation -33.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds