Wall clock time and date at job start Sun Mar 29 2020 23:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47252 * 2 1 4 4 H 1.09002 * 109.47582 * 304.99897 * 3 2 1 5 5 C 1.53001 * 109.47390 * 65.00250 * 3 2 1 6 6 C 1.50704 * 109.47044 * 185.00204 * 3 2 1 7 7 O 1.21286 * 120.00128 * 359.97438 * 6 3 2 8 8 N 1.34776 * 120.00003 * 180.02562 * 6 3 2 9 9 C 1.39928 * 119.99825 * 175.48809 * 8 6 3 10 10 C 1.38960 * 120.03329 * 215.14095 * 9 8 6 11 11 C 1.38156 * 120.06796 * 179.97438 * 10 9 8 12 12 C 1.38167 * 120.13839 * 359.74609 * 11 10 9 13 13 C 1.38912 * 120.06963 * 0.50868 * 12 11 10 14 14 O 1.35749 * 120.03677 * 179.76988 * 13 12 11 15 15 C 1.34840 * 116.99738 * 354.34293 * 14 13 12 16 16 H 1.07998 * 119.99626 * 5.02967 * 15 14 13 17 17 C 1.38651 * 119.99772 * 185.02573 * 15 14 13 18 18 N 1.31553 * 119.99968 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99799 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47353 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47014 * 119.99787 * 19 17 15 22 22 H 1.48493 * 109.47096 * 240.00154 * 19 17 15 23 23 C 1.38709 * 120.03905 * 35.12152 * 9 8 6 24 24 H 1.08997 * 109.46963 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46977 * 300.00216 * 1 2 3 26 26 H 1.08999 * 109.46659 * 59.99646 * 1 2 3 27 27 H 1.08999 * 109.46977 * 239.99784 * 2 1 3 28 28 H 1.08999 * 109.46659 * 120.00354 * 2 1 3 29 29 H 1.09002 * 109.47046 * 59.99319 * 5 3 2 30 30 H 1.08992 * 109.47173 * 180.02562 * 5 3 2 31 31 H 1.09006 * 109.46938 * 300.00305 * 5 3 2 32 32 H 0.97005 * 119.99909 * 355.48319 * 8 6 3 33 33 H 1.08001 * 119.96790 * 359.96001 * 10 9 8 34 34 H 1.08006 * 119.93135 * 180.02562 * 11 10 9 35 35 H 1.07997 * 119.96659 * 180.25717 * 12 11 10 36 36 H 0.97002 * 119.99620 * 179.97438 * 18 17 15 37 37 H 1.08000 * 120.06620 * 0.04242 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6354 2.1265 1.3074 6 6 3.5420 1.4442 -0.1239 7 8 4.1451 0.3950 -0.2038 8 7 4.2151 2.6116 -0.1448 9 6 5.6142 2.6123 -0.1646 10 6 6.3188 3.6031 0.5083 11 6 7.7003 3.6041 0.4897 12 6 8.3856 2.6177 -0.1931 13 6 7.6870 1.6275 -0.8721 14 8 8.3610 0.6613 -1.5467 15 6 9.7018 0.7855 -1.6166 16 1 10.1992 1.5800 -1.0803 17 6 10.4419 -0.1070 -2.3770 18 7 9.8360 -1.0752 -3.0298 19 14 12.2995 0.0646 -2.4734 20 1 12.7327 1.2245 -1.6535 21 1 12.9383 -1.1723 -1.9565 22 1 12.7043 0.2776 -3.8861 23 6 6.2994 1.6237 -0.8555 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0700 1.5874 2.1492 30 1 1.9984 3.1542 1.3071 31 1 0.5490 2.1252 1.3970 32 1 3.7296 3.4514 -0.1463 33 1 5.7860 4.3733 1.0462 34 1 8.2457 4.3751 1.0138 35 1 9.4655 2.6188 -0.2023 36 1 10.3538 -1.6993 -3.5620 37 1 5.7540 0.8528 -1.3795 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036681761.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:38 Heat of formation + Delta-G solvation = -49.489415 kcal Electronic energy + Delta-G solvation = -19287.127969 eV Core-core repulsion = 16222.901225 eV Total energy + Delta-G solvation = -3064.226745 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.29176 -38.67821 -36.67971 -35.39384 -34.06132 -32.21913 -30.25970 -29.28748 -28.20034 -25.51089 -25.18535 -22.87198 -21.61924 -20.91585 -19.64939 -18.19429 -17.41347 -16.67258 -15.72040 -15.50716 -15.03157 -14.72000 -14.48675 -14.17107 -13.73381 -13.53989 -13.50138 -13.06405 -12.64071 -12.49426 -12.32580 -11.87295 -11.71315 -11.66605 -11.43590 -11.16269 -10.99817 -10.94745 -10.80416 -10.72627 -10.42044 -9.72126 -9.60079 -9.09140 -8.79557 -7.66734 -7.15248 -6.39518 -3.98676 2.04948 2.37203 2.90820 3.15726 3.16608 3.22542 3.30525 4.00762 4.54233 4.60220 4.69692 4.79439 5.12399 5.17438 5.21115 5.32845 5.35672 5.43213 5.62813 5.65202 5.71698 5.80383 5.85819 5.95339 6.11579 6.12956 6.24440 6.28611 6.42052 6.74360 6.92595 7.07038 7.11929 7.37744 7.51136 7.74888 7.83600 8.05603 8.42394 9.05495 9.77364 10.78550 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029087 B = 0.004317 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.397800 B = 6484.678075 C = 7350.431108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C -0.108 4.108 4 H 0.097 0.903 5 C -0.145 4.145 6 C 0.507 3.493 7 O -0.509 6.509 8 N -0.670 5.670 9 C 0.174 3.826 10 C -0.236 4.236 11 C -0.059 4.059 12 C -0.246 4.246 13 C 0.166 3.834 14 O -0.174 6.174 15 C -0.392 4.392 16 H 0.093 0.907 17 C 0.038 3.962 18 N -0.861 5.861 19 Si 0.942 3.058 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.187 4.187 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.404 0.596 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.128 0.872 36 H 0.269 0.731 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.754 8.465 6.489 18.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C -0.130 4.130 4 H 0.115 0.885 5 C -0.203 4.203 6 C 0.294 3.706 7 O -0.382 6.382 8 N -0.315 5.315 9 C 0.081 3.919 10 C -0.257 4.257 11 C -0.078 4.078 12 C -0.266 4.266 13 C 0.112 3.888 14 O -0.077 6.077 15 C -0.468 4.468 16 H 0.111 0.889 17 C -0.166 4.166 18 N -0.495 5.495 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.209 4.209 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.239 0.761 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.145 0.855 36 H 0.079 0.921 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.372 7.261 6.170 17.244 hybrid contribution 0.763 0.627 -0.013 0.988 sum -13.609 7.888 6.157 16.892 Atomic orbital electron populations 1.21838 0.95558 1.01874 1.01680 1.21363 0.95192 0.94138 1.03903 1.21348 0.91545 0.99622 1.00478 0.88511 1.21832 1.02155 1.00221 0.96053 1.20831 0.89989 0.83644 0.76155 1.90785 1.69679 1.31222 1.46557 1.43433 1.05299 1.09097 1.73683 1.17217 0.81173 0.96755 0.96762 1.20271 0.94242 1.02865 1.08365 1.20499 0.93160 0.97028 0.97117 1.21175 1.00692 0.98747 1.05959 1.19152 0.91166 0.87845 0.90654 1.83998 1.21119 1.39627 1.62983 1.21402 0.78686 1.15814 1.30890 0.88944 1.25305 1.00492 0.95269 0.95525 1.70067 1.36198 1.14862 1.28419 0.85639 0.80689 0.78597 0.78428 1.19092 1.20166 1.20168 1.20181 0.91658 1.02846 1.06187 0.92471 0.92545 0.92765 0.90841 0.91168 0.91934 0.92201 0.91217 0.76067 0.87454 0.87089 0.85481 0.92095 0.84894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.67 37.16 0.36 -0.86 16 2 C -0.11 -1.18 4.75 -26.73 -0.13 -1.31 16 3 C -0.11 -1.13 2.72 -91.77 -0.25 -1.38 16 4 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 5 C -0.15 -1.18 8.85 37.16 0.33 -0.85 16 6 C 0.51 7.87 7.00 -10.98 -0.08 7.79 16 7 O -0.51 -10.54 13.36 5.55 0.07 -10.47 16 8 N -0.67 -9.86 5.19 -9.88 -0.05 -9.91 16 9 C 0.17 3.33 6.30 -83.72 -0.53 2.80 16 10 C -0.24 -4.13 9.96 -39.34 -0.39 -4.52 16 11 C -0.06 -1.10 10.03 -39.64 -0.40 -1.50 16 12 C -0.25 -5.53 9.17 -39.36 -0.36 -5.89 16 13 C 0.17 4.29 6.64 -39.13 -0.26 4.03 16 14 O -0.17 -5.25 9.76 0.02 0.00 -5.25 16 15 C -0.39 -11.31 9.49 30.89 0.29 -11.02 16 16 H 0.09 2.46 5.20 -52.49 -0.27 2.18 16 17 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 18 N -0.86 -26.06 13.67 55.48 0.76 -25.30 16 19 Si 0.94 20.99 29.55 -169.99 -5.02 15.96 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 23 C -0.19 -4.43 8.64 -39.21 -0.34 -4.77 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.93 7.96 -51.93 -0.41 0.52 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 31 H 0.07 0.44 6.57 -51.93 -0.34 0.10 16 32 H 0.40 4.22 8.38 -40.82 -0.34 3.88 16 33 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 35 H 0.13 2.83 5.63 -52.49 -0.30 2.54 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.13 3.38 6.23 -52.49 -0.33 3.05 16 LS Contribution 310.90 15.07 4.69 4.69 Total: -1.00 -34.31 310.90 -6.23 -40.53 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -4.83 Total: 6.24 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -1.84 Total: -16.49 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.71 Total: -35.21 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.07 Total: -15.71 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.31 -6.23 -40.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036681761.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.955 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds