Wall clock time and date at job start Sun Mar 29 2020 23:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46805 * 2 1 4 4 H 1.09003 * 109.47304 * 55.00913 * 3 2 1 5 5 C 1.52995 * 109.47519 * 294.99943 * 3 2 1 6 6 C 1.50702 * 109.47123 * 174.99941 * 3 2 1 7 7 O 1.21297 * 119.99980 * 0.02562 * 6 3 2 8 8 N 1.34779 * 120.00270 * 179.97438 * 6 3 2 9 9 C 1.39921 * 119.99780 * 184.25213 * 8 6 3 10 10 C 1.38963 * 120.04043 * 324.64994 * 9 8 6 11 11 C 1.38166 * 120.06534 * 179.74721 * 10 9 8 12 12 C 1.38173 * 120.13561 * 0.55118 * 11 10 9 13 13 C 1.38908 * 120.07095 * 359.69826 * 12 11 10 14 14 O 1.35751 * 120.02843 * 179.97438 * 13 12 11 15 15 C 1.34831 * 117.00074 * 185.36780 * 14 13 12 16 16 H 1.08006 * 119.99811 * 354.96317 * 15 14 13 17 17 C 1.38653 * 120.00224 * 174.96865 * 15 14 13 18 18 N 1.31555 * 120.00119 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00032 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47049 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47130 * 120.00028 * 19 17 15 22 22 H 1.48496 * 109.47076 * 240.00089 * 19 17 15 23 23 C 1.38724 * 120.03034 * 144.92666 * 9 8 6 24 24 H 1.09000 * 109.47256 * 299.99511 * 1 2 3 25 25 H 1.08990 * 109.47423 * 60.00056 * 1 2 3 26 26 H 1.09003 * 109.46943 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47512 * 240.00015 * 2 1 3 28 28 H 1.09004 * 109.47438 * 119.99727 * 2 1 3 29 29 H 1.08998 * 109.46822 * 59.99980 * 5 3 2 30 30 H 1.08996 * 109.47658 * 179.97438 * 5 3 2 31 31 H 1.09005 * 109.47118 * 300.00765 * 5 3 2 32 32 H 0.97000 * 119.99642 * 4.53984 * 8 6 3 33 33 H 1.08001 * 119.96720 * 0.02562 * 10 9 8 34 34 H 1.07997 * 119.92560 * 180.27276 * 11 10 9 35 35 H 1.07994 * 119.95723 * 179.72532 * 12 11 10 36 36 H 0.96995 * 120.00451 * 180.02562 * 18 17 15 37 37 H 1.07994 * 120.06846 * 359.95154 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5418 1.4444 0.1238 7 8 4.1451 0.3951 0.2037 8 7 4.2149 2.6119 0.1448 9 6 5.6138 2.6126 0.1700 10 6 6.2974 1.6265 0.8710 11 6 7.6789 1.6236 0.8919 12 6 8.3848 2.6070 0.2258 13 6 7.7072 3.5985 -0.4724 14 8 8.4016 4.5646 -1.1261 15 6 7.6853 5.5580 -1.6899 16 1 6.6060 5.5182 -1.6802 17 6 8.3342 6.6307 -2.2821 18 7 9.6488 6.6789 -2.2945 19 14 7.3418 8.0074 -3.0626 20 1 5.8928 7.7170 -2.9171 21 1 7.6601 9.2912 -2.3875 22 1 7.6836 8.1082 -4.5042 23 6 6.3198 3.6010 -0.5001 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.5489 2.1252 -1.3968 30 1 1.9980 3.1544 -1.3071 31 1 2.0697 1.5875 -2.1492 32 1 3.7293 3.4516 0.1466 33 1 5.7484 0.8590 1.3962 34 1 8.2080 0.8536 1.4337 35 1 9.4646 2.6046 0.2477 36 1 10.1028 7.4295 -2.7084 37 1 5.7908 4.3705 -1.0425 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036681764.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:39 Heat of formation + Delta-G solvation = -72.417072 kcal Electronic energy + Delta-G solvation = -19306.844216 eV Core-core repulsion = 16241.623254 eV Total energy + Delta-G solvation = -3065.220963 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.68471 -40.43812 -38.27570 -36.38334 -35.68521 -34.23286 -31.38883 -30.67943 -29.77572 -27.33617 -26.26772 -24.07891 -23.50332 -22.12167 -20.88618 -19.77900 -19.29650 -18.10945 -17.24753 -16.80078 -16.57849 -16.12346 -15.99198 -15.61241 -15.48144 -15.12496 -14.57351 -14.43308 -14.25212 -13.66637 -13.55277 -13.24061 -12.99403 -12.80499 -12.67994 -12.57219 -12.47038 -12.42266 -12.07986 -11.73325 -11.57798 -11.44410 -11.23351 -10.79459 -10.64824 -9.37102 -8.90455 -8.46538 -6.15711 0.38691 0.68168 1.36434 1.44644 1.54833 1.59351 2.06692 2.18225 2.82673 3.15358 3.48225 3.58948 3.83822 3.97418 4.10609 4.31106 4.37083 4.44999 4.51920 4.61417 4.63037 4.72609 4.75270 4.94470 5.01580 5.02867 5.11293 5.13026 5.23095 5.36971 5.39847 5.46511 5.52613 5.65434 5.66074 6.01532 6.16459 6.46330 6.97690 7.12762 7.77013 8.76748 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021970 B = 0.004778 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.148653 B = 5858.936633 C = 7025.695560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.099 4.099 4 H 0.127 0.873 5 C -0.147 4.147 6 C 0.509 3.491 7 O -0.560 6.560 8 N -0.662 5.662 9 C 0.183 3.817 10 C -0.202 4.202 11 C -0.054 4.054 12 C -0.214 4.214 13 C 0.134 3.866 14 O -0.227 6.227 15 C -0.414 4.414 16 H 0.104 0.896 17 C -0.023 4.023 18 N -0.920 5.920 19 Si 1.019 2.981 20 H -0.247 1.247 21 H -0.269 1.269 22 H -0.271 1.271 23 C -0.259 4.259 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.422 0.578 33 H 0.132 0.868 34 H 0.153 0.847 35 H 0.119 0.881 36 H 0.273 0.727 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.504 -6.896 4.538 21.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C -0.120 4.120 4 H 0.145 0.855 5 C -0.204 4.204 6 C 0.299 3.701 7 O -0.437 6.437 8 N -0.307 5.307 9 C 0.089 3.911 10 C -0.222 4.222 11 C -0.072 4.072 12 C -0.234 4.234 13 C 0.083 3.917 14 O -0.133 6.133 15 C -0.490 4.490 16 H 0.121 0.879 17 C -0.220 4.220 18 N -0.558 5.558 19 Si 0.839 3.161 20 H -0.170 1.170 21 H -0.194 1.194 22 H -0.196 1.196 23 C -0.281 4.281 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.261 0.739 33 H 0.150 0.850 34 H 0.171 0.829 35 H 0.137 0.863 36 H 0.082 0.918 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.756 -7.497 4.467 20.687 hybrid contribution 0.214 0.997 -0.457 1.117 sum -18.542 -6.500 4.010 20.054 Atomic orbital electron populations 1.21807 0.93132 1.02535 1.02975 1.21340 0.97226 0.93655 1.02135 1.21428 0.87596 1.00323 1.02618 0.85479 1.21885 1.03902 1.00323 0.94273 1.21734 0.91843 0.82415 0.74086 1.90678 1.71111 1.32626 1.49313 1.43547 1.03878 1.10626 1.72681 1.17515 0.83280 0.95432 0.94918 1.20990 0.94381 1.01783 1.05070 1.20945 0.93464 0.96423 0.96398 1.20491 1.00105 0.97763 1.05028 1.19589 0.91113 0.89828 0.91195 1.83978 1.35883 1.31706 1.61745 1.21875 0.92115 0.98904 1.36123 0.87851 1.26612 0.97265 1.00534 0.97593 1.70191 1.09403 1.32372 1.43875 0.84518 0.78234 0.75837 0.77549 1.17034 1.19372 1.19603 1.20861 0.93504 1.04723 1.09004 0.91475 0.91324 0.92177 0.92971 0.92473 0.88484 0.91319 0.93481 0.73928 0.84974 0.82940 0.86307 0.91824 0.85180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.67 71.98 0.70 -0.98 16 2 C -0.11 -1.86 4.75 30.59 0.15 -1.72 16 3 C -0.10 -1.69 2.72 -11.54 -0.03 -1.72 16 4 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 5 C -0.15 -2.10 8.85 71.98 0.64 -1.46 16 6 C 0.51 13.91 6.99 87.66 0.61 14.52 16 7 O -0.56 -19.78 13.38 -3.08 -0.04 -19.82 16 8 N -0.66 -18.66 5.19 -303.53 -1.58 -20.24 16 9 C 0.18 6.88 6.29 38.14 0.24 7.12 16 10 C -0.20 -7.58 8.69 22.43 0.19 -7.38 16 11 C -0.05 -2.00 10.03 22.24 0.22 -1.78 16 12 C -0.21 -9.45 9.99 22.41 0.22 -9.23 16 13 C 0.13 6.75 6.65 22.56 0.15 6.90 16 14 O -0.23 -13.59 9.76 -22.76 -0.22 -13.81 16 15 C -0.41 -23.69 9.49 67.92 0.64 -23.05 16 16 H 0.10 5.35 5.20 -2.91 -0.02 5.33 16 17 C -0.02 -1.26 5.49 84.83 0.47 -0.79 16 18 N -0.92 -56.03 13.67 21.61 0.30 -55.73 16 19 Si 1.02 41.71 29.55 68.60 2.03 43.73 16 20 H -0.25 -9.12 7.11 99.48 0.71 -8.42 16 21 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 22 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 23 C -0.26 -11.34 9.08 22.51 0.20 -11.14 16 24 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.07 0.64 6.56 -2.39 -0.02 0.63 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.16 7.96 -2.39 -0.02 1.14 16 29 H 0.10 0.91 6.56 -2.39 -0.02 0.90 16 30 H 0.07 0.91 7.67 -2.39 -0.02 0.89 16 31 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.42 9.00 8.38 -92.71 -0.78 8.22 16 33 H 0.13 4.81 6.25 -2.91 -0.02 4.79 16 34 H 0.15 4.48 8.06 -2.91 -0.02 4.45 16 35 H 0.12 5.10 8.06 -2.91 -0.02 5.08 16 36 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.13 5.55 5.63 -2.91 -0.02 5.53 16 Total: -1.00 -74.12 310.93 5.20 -68.92 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.31 Total: 27.65 kcal Atomic # 6 Polarization: -35.11 SS G_CDS: 4.41 Total: -30.70 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -1.28 Total: -75.97 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -0.26 Total: -33.64 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -74.12 5.20 -68.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036681764.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.494 kcal (2) G-P(sol) polarization free energy of solvation -74.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds