Wall clock time and date at job start Sun Mar 29 2020 23:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47238 * 2 1 4 4 H 1.09003 * 109.47004 * 304.28585 * 3 2 1 5 5 C 1.50706 * 109.47153 * 184.29130 * 3 2 1 6 6 H 1.07998 * 119.99744 * 239.99737 * 5 3 2 7 7 C 1.37870 * 119.99802 * 59.72141 * 5 3 2 8 8 N 1.31519 * 120.00342 * 0.27945 * 7 5 3 9 9 Si 1.86800 * 119.99932 * 180.27694 * 7 5 3 10 10 H 1.48502 * 109.47138 * 60.00108 * 9 7 5 11 11 H 1.48497 * 109.47511 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47118 * 300.00062 * 9 7 5 13 13 N 1.46897 * 109.47562 * 64.28622 * 3 2 1 14 14 C 1.46899 * 111.00378 * 205.80797 * 13 3 2 15 15 C 1.50698 * 109.47082 * 174.82032 * 14 13 3 16 16 C 1.38288 * 119.98481 * 260.00173 * 15 14 13 17 17 C 1.38209 * 120.14321 * 179.97438 * 16 15 14 18 18 C 1.38278 * 120.14247 * 0.02562 * 17 16 15 19 19 C 1.38504 * 120.03184 * 0.02562 * 18 17 16 20 20 C 1.38498 * 119.98758 * 79.72409 * 15 14 13 21 21 O 1.36505 * 131.53873 * 0.68091 * 20 15 14 22 22 C 1.43988 * 105.56258 * 162.24128 * 21 20 15 23 23 O 1.36501 * 131.53982 * 180.02562 * 19 18 17 24 24 H 1.08999 * 109.46754 * 54.21250 * 1 2 3 25 25 H 1.08990 * 109.47342 * 174.21059 * 1 2 3 26 26 H 1.09003 * 109.47042 * 294.21591 * 1 2 3 27 27 H 1.08996 * 109.47093 * 239.99491 * 2 1 3 28 28 H 1.09001 * 109.46671 * 119.99992 * 2 1 3 29 29 H 0.96998 * 120.00126 * 180.02562 * 8 7 5 30 30 H 1.00900 * 110.99657 * 81.85647 * 13 3 2 31 31 H 1.08999 * 109.47241 * 294.82249 * 14 13 3 32 32 H 1.09001 * 109.46972 * 54.82264 * 14 13 3 33 33 H 1.07997 * 119.92752 * 0.02562 * 16 15 14 34 34 H 1.07999 * 119.92647 * 180.02562 * 17 16 15 35 35 H 1.08005 * 119.98466 * 179.97438 * 18 17 16 36 36 H 1.09005 * 110.56844 * 268.32152 * 22 21 20 37 37 H 1.08990 * 110.69612 * 145.51025 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6153 1.9780 -0.8491 5 6 3.5433 1.4437 -0.1063 6 1 4.1395 1.8916 0.6750 7 6 4.1577 0.8682 -1.1982 8 7 3.4316 0.3229 -2.1497 9 14 6.0212 0.8630 -1.3263 10 1 6.5951 0.1344 -0.1664 11 1 6.4291 0.1896 -2.5854 12 1 6.5212 2.2613 -1.3290 13 7 1.6368 2.1045 1.2478 14 6 1.5415 3.5590 1.0651 15 6 1.0048 4.1893 2.3244 16 6 -0.3297 4.5428 2.4058 17 6 -0.8254 5.1205 3.5593 18 6 0.0109 5.3481 4.6367 19 6 1.3487 4.9977 4.5619 20 6 1.8470 4.4090 3.4017 21 8 3.1786 4.1638 3.5744 22 6 3.5772 4.9701 4.6988 23 8 2.3662 5.1119 5.4646 24 1 -0.3633 0.6010 -0.8336 25 1 -0.3633 -1.0223 -0.1037 26 1 -0.3633 0.4215 0.9373 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8639 -0.0823 -2.9177 30 1 2.2695 1.8752 1.9996 31 1 2.5303 3.9636 0.8492 32 1 0.8701 3.7776 0.2347 33 1 -0.9860 4.3662 1.5665 34 1 -1.8683 5.3949 3.6192 35 1 -0.3792 5.8002 5.5367 36 1 3.9348 5.9440 4.3642 37 1 4.3436 4.4625 5.2844 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040667392.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:54 Heat of formation + Delta-G solvation = -42.252326 kcal Electronic energy + Delta-G solvation = -19890.525387 eV Core-core repulsion = 16826.612466 eV Total energy + Delta-G solvation = -3063.912921 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.00856 -37.99471 -36.34223 -35.82492 -32.91037 -31.44667 -29.89800 -29.73347 -26.57268 -25.72165 -24.41303 -22.78064 -22.49119 -21.08290 -19.46029 -17.90539 -17.50054 -16.91808 -16.63616 -16.11954 -14.82688 -14.53662 -14.25542 -14.09356 -13.86736 -13.62794 -13.18584 -12.81483 -12.77827 -12.52944 -12.15315 -11.97656 -11.59767 -11.24568 -11.15455 -10.92214 -10.79800 -10.68462 -10.61108 -10.14275 -9.57166 -9.53569 -9.04686 -8.52584 -8.35929 -7.93631 -7.23688 -5.97809 -4.10282 1.30969 1.37234 2.90172 3.29446 3.34288 3.37291 3.57444 3.73527 4.41320 4.60639 4.71901 4.91196 5.10911 5.20715 5.26831 5.32249 5.38545 5.58665 5.73437 6.00722 6.17385 6.22935 6.41122 6.45486 6.46203 6.53532 6.60454 6.73878 6.76788 7.14708 7.19972 7.28278 7.45633 7.60576 7.79931 8.10490 8.16520 8.33888 8.66355 9.01901 9.57071 11.02380 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.020750 B = 0.005907 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.091407 B = 4739.316972 C = 5755.422515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.681 5.681 14 C 0.104 3.896 15 C -0.044 4.044 16 C -0.096 4.096 17 C -0.114 4.114 18 C -0.112 4.112 19 C 0.024 3.976 20 C 0.039 3.961 21 O -0.299 6.299 22 C 0.212 3.788 23 O -0.315 6.315 24 H 0.036 0.964 25 H 0.024 0.976 26 H 0.046 0.954 27 H 0.091 0.909 28 H 0.030 0.970 29 H 0.262 0.738 30 H 0.330 0.670 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.079 0.921 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.461 9.777 10.748 15.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.584 4.584 6 H 0.072 0.928 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.311 5.311 14 C -0.026 4.026 15 C -0.045 4.045 16 C -0.115 4.115 17 C -0.133 4.133 18 C -0.131 4.131 19 C -0.020 4.020 20 C -0.006 4.006 21 O -0.215 6.215 22 C 0.100 3.900 23 O -0.231 6.231 24 H 0.056 0.944 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.109 0.891 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.147 0.853 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.097 0.903 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.943 9.455 10.555 15.366 hybrid contribution 2.360 0.242 -0.029 2.373 sum -3.583 9.698 10.526 14.754 Atomic orbital electron populations 1.21684 0.98966 0.98269 1.00362 1.21494 0.92114 0.99136 1.01699 1.19174 0.92772 0.91196 0.86100 0.94959 1.21856 0.92731 1.37863 1.05947 0.92825 1.24918 0.97919 0.94987 0.95639 1.69867 1.34927 1.37986 1.09653 0.86717 0.86156 0.78150 0.77318 1.20300 1.21233 1.20441 1.60990 1.55505 1.04569 1.10020 1.20702 0.99244 0.90663 0.91978 1.19284 0.92299 0.99025 0.93922 1.20886 0.93395 0.98581 0.98617 1.20861 0.99424 1.00292 0.92675 1.19957 0.89185 1.03534 1.00382 1.19801 0.91551 1.02761 0.87916 1.19687 0.84288 1.01184 0.95441 1.87458 1.21136 1.63549 1.49346 1.25570 0.87906 0.95536 0.80964 1.87312 1.14459 1.89797 1.31548 0.94435 0.95697 0.93477 0.89103 0.95126 0.92850 0.85332 0.94136 0.90783 0.84530 0.84833 0.85347 0.90333 0.85458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.72 37.16 0.36 -2.45 16 2 C -0.11 -2.57 5.44 -26.73 -0.15 -2.71 16 3 C 0.22 5.36 1.99 -68.87 -0.14 5.23 16 4 H 0.03 0.88 7.70 -51.93 -0.40 0.48 16 5 C -0.54 -14.88 8.47 -34.44 -0.29 -15.17 16 6 H 0.05 1.48 7.73 -52.49 -0.41 1.08 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 8 N -0.89 -25.08 11.29 55.43 0.63 -24.46 16 9 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.68 -14.73 5.74 -109.22 -0.63 -15.35 16 14 C 0.10 1.99 5.64 -4.98 -0.03 1.97 16 15 C -0.04 -0.73 5.45 -104.51 -0.57 -1.30 16 16 C -0.10 -1.32 9.66 -39.57 -0.38 -1.70 16 17 C -0.11 -1.33 10.04 -39.58 -0.40 -1.73 16 18 C -0.11 -1.40 10.06 -39.47 -0.40 -1.80 16 19 C 0.02 0.36 7.15 -39.08 -0.28 0.08 16 20 C 0.04 0.65 6.86 -39.09 -0.27 0.38 16 21 O -0.30 -5.07 11.39 -45.70 -0.52 -5.59 16 22 C 0.21 2.64 8.89 101.05 0.90 3.54 16 23 O -0.31 -4.51 11.40 -45.69 -0.52 -5.03 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.94 7.90 -51.93 -0.41 0.53 16 27 H 0.09 2.44 5.95 -51.93 -0.31 2.13 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.33 7.45 8.45 -39.29 -0.33 7.12 16 31 H 0.04 0.86 8.11 -51.93 -0.42 0.43 16 32 H 0.07 1.37 7.79 -51.93 -0.40 0.96 16 33 H 0.14 1.65 8.03 -52.49 -0.42 1.23 16 34 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 312.13 15.07 4.70 4.70 Total: -1.00 -29.80 312.13 -8.29 -38.09 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.20 Total: 5.19 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -1.73 Total: -13.90 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.00 Total: -39.81 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -1.04 Total: -10.63 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.80 -8.29 -38.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040667392.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.166 kcal (2) G-P(sol) polarization free energy of solvation -29.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds