Wall clock time and date at job start Sun Mar 29 2020 23:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47238 * 2 1 4 4 H 1.09003 * 109.47004 * 304.28585 * 3 2 1 5 5 C 1.50706 * 109.47153 * 184.29130 * 3 2 1 6 6 H 1.07998 * 119.99744 * 239.99737 * 5 3 2 7 7 C 1.37870 * 119.99802 * 59.72141 * 5 3 2 8 8 N 1.31519 * 120.00342 * 0.27945 * 7 5 3 9 9 Si 1.86800 * 119.99932 * 180.27694 * 7 5 3 10 10 H 1.48502 * 109.47138 * 60.00108 * 9 7 5 11 11 H 1.48497 * 109.47511 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47118 * 300.00062 * 9 7 5 13 13 N 1.46897 * 109.47562 * 64.28622 * 3 2 1 14 14 C 1.46899 * 111.00378 * 205.80797 * 13 3 2 15 15 C 1.50698 * 109.47082 * 174.82032 * 14 13 3 16 16 C 1.38288 * 119.98481 * 260.00173 * 15 14 13 17 17 C 1.38209 * 120.14321 * 179.97438 * 16 15 14 18 18 C 1.38278 * 120.14247 * 0.02562 * 17 16 15 19 19 C 1.38504 * 120.03184 * 0.02562 * 18 17 16 20 20 C 1.38498 * 119.98758 * 79.72409 * 15 14 13 21 21 O 1.36505 * 131.53873 * 0.68091 * 20 15 14 22 22 C 1.43988 * 105.56258 * 162.24128 * 21 20 15 23 23 O 1.36501 * 131.53982 * 180.02562 * 19 18 17 24 24 H 1.08999 * 109.46754 * 54.21250 * 1 2 3 25 25 H 1.08990 * 109.47342 * 174.21059 * 1 2 3 26 26 H 1.09003 * 109.47042 * 294.21591 * 1 2 3 27 27 H 1.08996 * 109.47093 * 239.99491 * 2 1 3 28 28 H 1.09001 * 109.46671 * 119.99992 * 2 1 3 29 29 H 0.96998 * 120.00126 * 180.02562 * 8 7 5 30 30 H 1.00900 * 110.99657 * 81.85647 * 13 3 2 31 31 H 1.08999 * 109.47241 * 294.82249 * 14 13 3 32 32 H 1.09001 * 109.46972 * 54.82264 * 14 13 3 33 33 H 1.07997 * 119.92752 * 0.02562 * 16 15 14 34 34 H 1.07999 * 119.92647 * 180.02562 * 17 16 15 35 35 H 1.08005 * 119.98466 * 179.97438 * 18 17 16 36 36 H 1.09005 * 110.56844 * 268.32152 * 22 21 20 37 37 H 1.08990 * 110.69612 * 145.51025 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6153 1.9780 -0.8491 5 6 3.5433 1.4437 -0.1063 6 1 4.1395 1.8916 0.6750 7 6 4.1577 0.8682 -1.1982 8 7 3.4316 0.3229 -2.1497 9 14 6.0212 0.8630 -1.3263 10 1 6.5951 0.1344 -0.1664 11 1 6.4291 0.1896 -2.5854 12 1 6.5212 2.2613 -1.3290 13 7 1.6368 2.1045 1.2478 14 6 1.5415 3.5590 1.0651 15 6 1.0048 4.1893 2.3244 16 6 -0.3297 4.5428 2.4058 17 6 -0.8254 5.1205 3.5593 18 6 0.0109 5.3481 4.6367 19 6 1.3487 4.9977 4.5619 20 6 1.8470 4.4090 3.4017 21 8 3.1786 4.1638 3.5744 22 6 3.5772 4.9701 4.6988 23 8 2.3662 5.1119 5.4646 24 1 -0.3633 0.6010 -0.8336 25 1 -0.3633 -1.0223 -0.1037 26 1 -0.3633 0.4215 0.9373 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8639 -0.0823 -2.9177 30 1 2.2695 1.8752 1.9996 31 1 2.5303 3.9636 0.8492 32 1 0.8701 3.7776 0.2347 33 1 -0.9860 4.3662 1.5665 34 1 -1.8683 5.3949 3.6192 35 1 -0.3792 5.8002 5.5367 36 1 3.9348 5.9440 4.3642 37 1 4.3436 4.4625 5.2844 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040667392.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:54 Heat of formation + Delta-G solvation = -61.212096 kcal Electronic energy + Delta-G solvation = -19891.347544 eV Core-core repulsion = 16826.612466 eV Total energy + Delta-G solvation = -3064.735078 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.08613 -39.18008 -37.84482 -37.19832 -34.66422 -33.29272 -31.29825 -30.83259 -28.42711 -26.72807 -26.04952 -24.33454 -23.81354 -22.36260 -21.39617 -19.02358 -18.74972 -18.47249 -18.02782 -17.19770 -16.79886 -16.04460 -15.59067 -15.45873 -15.20315 -14.95963 -14.71875 -14.40244 -13.92744 -13.78468 -13.63875 -13.43549 -13.11079 -13.03613 -12.89805 -12.75368 -12.49521 -12.15508 -11.95738 -11.79683 -11.52243 -11.36755 -11.02801 -10.47887 -9.69605 -9.09553 -9.00215 -8.07680 -6.29267 0.24215 0.27133 1.36265 1.36861 1.44895 1.87624 2.38264 2.58508 2.65203 3.11868 3.47144 3.79856 3.85580 3.95282 4.09880 4.25968 4.28765 4.40500 4.53805 4.59026 4.69755 4.76664 4.84654 4.94274 5.10408 5.15124 5.20780 5.42412 5.43128 5.49816 5.56172 5.60845 5.62682 5.75362 6.08815 6.16549 6.20413 6.35313 6.72504 6.95193 7.41430 8.88983 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.020750 B = 0.005907 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.091407 B = 4739.316972 C = 5755.422515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.102 4.102 3 C 0.222 3.778 4 H 0.006 0.994 5 C -0.562 4.562 6 H 0.042 0.958 7 C 0.023 3.977 8 N -0.908 5.908 9 Si 0.948 3.052 10 H -0.274 1.274 11 H -0.279 1.279 12 H -0.277 1.277 13 N -0.669 5.669 14 C 0.111 3.889 15 C -0.069 4.069 16 C -0.098 4.098 17 C -0.098 4.098 18 C -0.104 4.104 19 C 0.010 3.990 20 C 0.012 3.988 21 O -0.334 6.334 22 C 0.205 3.795 23 O -0.322 6.322 24 H 0.035 0.965 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.023 0.977 29 H 0.263 0.737 30 H 0.324 0.676 31 H 0.011 0.989 32 H 0.077 0.923 33 H 0.152 0.848 34 H 0.177 0.823 35 H 0.160 0.840 36 H 0.099 0.901 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.660 10.666 12.112 17.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.141 4.141 3 C 0.113 3.887 4 H 0.024 0.976 5 C -0.602 4.602 6 H 0.060 0.940 7 C -0.177 4.177 8 N -0.547 5.547 9 Si 0.774 3.226 10 H -0.199 1.199 11 H -0.204 1.204 12 H -0.202 1.202 13 N -0.298 5.298 14 C -0.018 4.018 15 C -0.070 4.070 16 C -0.116 4.116 17 C -0.115 4.115 18 C -0.123 4.123 19 C -0.034 4.034 20 C -0.032 4.032 21 O -0.250 6.250 22 C 0.094 3.906 23 O -0.239 6.239 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.139 0.861 31 H 0.029 0.971 32 H 0.095 0.905 33 H 0.170 0.830 34 H 0.195 0.805 35 H 0.177 0.823 36 H 0.117 0.883 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.149 10.357 11.929 17.340 hybrid contribution 2.700 0.030 -0.409 2.731 sum -4.448 10.386 11.521 16.137 Atomic orbital electron populations 1.21534 0.96029 0.99642 1.00768 1.21357 0.94720 0.98092 0.99908 1.18975 0.91473 0.91679 0.86551 0.97641 1.22107 0.94162 1.37978 1.05908 0.93973 1.25615 1.02084 0.94670 0.95349 1.69981 1.36442 1.38297 1.09946 0.85773 0.81164 0.78136 0.77518 1.19949 1.20381 1.20231 1.60949 1.54460 1.06169 1.08189 1.20592 0.97975 0.89090 0.94128 1.19174 0.93876 1.01080 0.92867 1.21151 0.92190 0.98164 1.00143 1.21323 1.01177 0.98001 0.91019 1.20476 0.88069 1.02029 1.01700 1.20128 0.92629 1.03208 0.87440 1.19928 0.84422 1.02430 0.96436 1.87398 1.21750 1.64871 1.51017 1.25998 0.87772 0.96554 0.80284 1.87278 1.14873 1.89903 1.31811 0.94591 0.93694 0.92521 0.91833 0.95829 0.92735 0.86074 0.97119 0.90472 0.83013 0.80538 0.82254 0.88329 0.82843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.98 9.72 71.98 0.70 -4.28 16 2 C -0.10 -5.03 5.44 30.59 0.17 -4.87 16 3 C 0.22 11.41 1.99 44.17 0.09 11.50 16 4 H 0.01 0.32 7.70 -2.39 -0.02 0.30 16 5 C -0.56 -31.73 8.47 25.60 0.22 -31.51 16 6 H 0.04 2.42 7.73 -2.91 -0.02 2.39 16 7 C 0.02 1.30 5.29 84.65 0.45 1.75 16 8 N -0.91 -52.39 11.29 21.45 0.24 -52.15 16 9 Si 0.95 44.46 29.54 68.60 2.03 46.49 16 10 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 N -0.67 -29.76 5.74 -499.47 -2.86 -32.62 16 14 C 0.11 4.45 5.64 85.56 0.48 4.93 16 15 C -0.07 -2.29 5.45 -19.79 -0.11 -2.39 16 16 C -0.10 -2.48 9.66 22.27 0.22 -2.27 16 17 C -0.10 -1.89 10.04 22.27 0.22 -1.67 16 18 C -0.10 -2.27 10.06 22.34 0.22 -2.04 16 19 C 0.01 0.29 7.15 22.59 0.16 0.45 16 20 C 0.01 0.42 6.86 22.59 0.15 0.57 16 21 O -0.33 -11.62 11.39 -76.11 -0.87 -12.48 16 22 C 0.20 4.98 8.89 113.37 1.01 5.99 16 23 O -0.32 -8.86 11.40 -76.07 -0.87 -9.72 16 24 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.06 2.18 7.90 -2.39 -0.02 2.16 16 27 H 0.06 3.49 5.95 -2.39 -0.01 3.48 16 28 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 30 H 0.32 15.15 8.45 -89.69 -0.76 14.39 16 31 H 0.01 0.48 8.11 -2.39 -0.02 0.46 16 32 H 0.08 2.94 7.79 -2.39 -0.02 2.93 16 33 H 0.15 3.30 8.03 -2.91 -0.02 3.27 16 34 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 36 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.15 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -66.01 312.13 1.96 -64.05 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.31 Total: 20.28 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: 3.98 Total: -23.85 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -2.62 Total: -84.77 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -1.73 Total: -22.21 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -66.01 1.96 -64.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040667392.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.837 kcal (2) G-P(sol) polarization free energy of solvation -66.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds