Wall clock time and date at job start Mon Mar 30 2020 00:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47389 * 2 1 4 4 N 1.46502 * 109.47560 * 179.97438 * 3 2 1 5 5 C 1.36904 * 120.00087 * 270.00337 * 4 3 2 6 6 H 1.07997 * 120.00223 * 144.36209 * 5 4 3 7 7 C 1.39021 * 119.99358 * 324.35679 * 5 4 3 8 8 N 1.31382 * 119.99425 * 155.63677 * 7 5 4 9 9 Si 1.86798 * 120.00591 * 335.63306 * 7 5 4 10 10 H 1.48502 * 109.46850 * 95.32983 * 9 7 5 11 11 H 1.48501 * 109.47091 * 215.32515 * 9 7 5 12 12 H 1.48498 * 109.47074 * 335.33013 * 9 7 5 13 13 C 1.34779 * 119.99728 * 89.99569 * 4 3 2 14 14 O 1.21626 * 119.99828 * 5.49151 * 13 4 3 15 15 C 1.47432 * 120.00023 * 185.48503 * 13 4 3 16 16 C 1.39768 * 120.19183 * 321.46469 * 15 13 4 17 17 C 1.37773 * 119.89624 * 179.97438 * 16 15 13 18 18 C 1.38555 * 120.31092 * 359.97438 * 17 16 15 19 19 C 1.38085 * 120.39710 * 0.02662 * 18 17 16 20 20 C 1.38675 * 120.08998 * 359.95138 * 19 18 17 21 21 O 1.35666 * 120.15339 * 179.97438 * 20 19 18 22 22 C 1.42904 * 116.99742 * 0.02562 * 21 20 19 23 23 H 1.09003 * 109.47331 * 59.99979 * 1 2 3 24 24 H 1.08998 * 109.47208 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46992 * 300.00133 * 1 2 3 26 26 H 1.09005 * 109.47502 * 239.99786 * 2 1 3 27 27 H 1.09003 * 109.47331 * 120.00021 * 2 1 3 28 28 H 1.08997 * 109.47266 * 59.99252 * 3 2 1 29 29 H 1.09003 * 109.46901 * 300.00284 * 3 2 1 30 30 H 0.97003 * 120.00280 * 179.97438 * 8 7 5 31 31 H 1.08000 * 120.05215 * 0.24599 * 16 15 13 32 32 H 1.08007 * 119.84149 * 179.97438 * 17 16 15 33 33 H 1.07997 * 119.80624 * 180.02562 * 18 17 16 34 34 H 1.08000 * 119.95188 * 179.97438 * 19 18 17 35 35 H 1.09005 * 109.46939 * 299.99862 * 22 21 20 36 36 H 1.08999 * 109.47147 * 59.99697 * 22 21 20 37 37 H 1.08995 * 109.46877 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1891 1.4426 1.1865 6 1 5.1173 0.8977 1.2746 7 6 3.6887 2.1443 2.2774 8 7 4.0287 1.7925 3.4967 9 14 2.5332 3.5874 2.0096 10 1 1.1271 3.1230 2.1223 11 1 2.7946 4.6280 3.0362 12 1 2.7591 4.1581 0.6574 13 6 4.1794 1.4422 -1.1663 14 8 3.5758 1.5428 -2.2175 15 6 5.6486 1.3202 -1.1687 16 6 6.4092 1.9663 -0.1901 17 6 7.7818 1.8477 -0.1977 18 6 8.4128 1.0901 -1.1712 19 6 7.6736 0.4466 -2.1439 20 6 6.2911 0.5543 -2.1516 21 8 5.5637 -0.0770 -3.1070 22 6 6.2873 -0.8380 -4.0763 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.6799 2.2823 4.2579 31 1 5.9213 2.5540 0.5735 32 1 8.3686 2.3477 0.5587 33 1 9.4892 1.0024 -1.1692 34 1 8.1730 -0.1418 -2.8995 35 1 6.9723 -0.1830 -4.6147 36 1 6.8538 -1.6219 -3.5736 37 1 5.5877 -1.2897 -4.7795 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044372860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:02:55 Heat of formation + Delta-G solvation = -33.467576 kcal Electronic energy + Delta-G solvation = -20455.006068 eV Core-core repulsion = 17391.474083 eV Total energy + Delta-G solvation = -3063.531986 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.93246 -38.40546 -36.71525 -35.18743 -33.04106 -31.70805 -30.54289 -29.59043 -27.06718 -25.90676 -24.99087 -22.64053 -21.58119 -21.02827 -19.24788 -17.98152 -16.89814 -16.28072 -15.74141 -15.36840 -15.06963 -14.69472 -14.21752 -14.06954 -13.78517 -13.31679 -13.12762 -12.95955 -12.48335 -12.38252 -12.00324 -11.71484 -11.60929 -11.43118 -11.11472 -10.93091 -10.80264 -10.73844 -10.66714 -10.32749 -10.00339 -9.72436 -9.14521 -8.55422 -8.33259 -7.79864 -7.65378 -6.51102 -4.02875 1.63653 1.97139 3.04903 3.21509 3.30863 3.68992 3.77224 4.11510 4.30363 4.49868 4.97517 5.14240 5.31725 5.34656 5.40032 5.62564 5.63594 5.67259 5.67795 5.85199 5.90926 6.00974 6.10768 6.26956 6.38263 6.41645 6.46992 6.52708 6.73308 6.82311 6.87384 6.95756 7.08788 7.33577 7.39244 7.85388 8.06288 8.26814 8.94395 9.38187 9.72949 10.58062 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018578 B = 0.008512 C = 0.006453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.772018 B = 3288.654153 C = 4337.933809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.104 3.896 4 N -0.459 5.459 5 C -0.348 4.348 6 H 0.111 0.889 7 C 0.068 3.932 8 N -0.852 5.852 9 Si 0.869 3.131 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.260 1.260 13 C 0.525 3.475 14 O -0.582 6.582 15 C -0.132 4.132 16 C -0.026 4.026 17 C -0.176 4.176 18 C -0.074 4.074 19 C -0.231 4.231 20 C 0.160 3.840 21 O -0.293 6.293 22 C 0.027 3.973 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.275 0.725 31 H 0.161 0.839 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.077 -2.472 -6.861 8.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.019 4.019 4 N -0.179 5.179 5 C -0.475 4.475 6 H 0.128 0.872 7 C -0.140 4.140 8 N -0.487 5.487 9 Si 0.696 3.304 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.184 1.184 13 C 0.315 3.685 14 O -0.466 6.466 15 C -0.135 4.135 16 C -0.044 4.044 17 C -0.195 4.195 18 C -0.093 4.093 19 C -0.250 4.250 20 C 0.113 3.887 21 O -0.205 6.205 22 C -0.069 4.069 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.178 0.822 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.141 0.859 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.528 -2.403 -7.181 8.354 hybrid contribution -0.218 0.525 0.151 0.588 sum 3.311 -1.878 -7.030 7.994 Atomic orbital electron populations 1.21704 0.96373 1.01041 1.01339 1.21764 0.94736 0.97925 1.02553 1.21635 0.82295 0.96766 1.01197 1.43584 1.03974 1.64794 1.05565 1.19204 1.09669 1.32099 0.86522 0.87180 1.25265 0.96852 0.97276 0.94600 1.69795 1.43249 1.37601 0.98031 0.87072 0.80850 0.83294 0.79186 1.19998 1.21429 1.18410 1.17922 0.86351 0.80407 0.83811 1.90645 1.69679 1.54586 1.31732 1.19337 0.94608 1.02829 0.96744 1.21946 0.92904 0.94816 0.94752 1.21028 0.94860 1.03107 1.00476 1.20930 0.99067 0.95528 0.93756 1.20986 0.92374 1.07966 1.03692 1.19062 0.89620 0.91722 0.88282 1.86266 1.34568 1.61746 1.37893 1.23007 0.97857 0.94733 0.91259 0.93027 0.93034 0.93038 0.92106 0.91189 0.91738 0.91211 0.91444 0.82169 0.86037 0.86469 0.85943 0.93076 0.93139 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.91 37.16 0.37 -2.04 16 2 C -0.13 -2.66 6.26 -26.73 -0.17 -2.83 16 3 C 0.10 2.38 4.28 -4.04 -0.02 2.36 16 4 N -0.46 -11.43 2.20 -116.03 -0.25 -11.69 16 5 C -0.35 -8.93 6.97 -15.00 -0.10 -9.03 16 6 H 0.11 2.96 6.19 -52.49 -0.33 2.64 16 7 C 0.07 1.75 5.28 -17.45 -0.09 1.65 16 8 N -0.85 -22.78 13.95 55.50 0.77 -22.00 16 9 Si 0.87 20.18 25.11 -169.99 -4.27 15.91 16 10 H -0.27 -6.14 6.64 56.52 0.38 -5.76 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 13 C 0.53 13.23 7.16 -12.52 -0.09 13.14 16 14 O -0.58 -15.73 15.64 -11.20 -0.18 -15.90 16 15 C -0.13 -2.96 5.39 -104.85 -0.56 -3.52 16 16 C -0.03 -0.53 7.65 -39.18 -0.30 -0.83 16 17 C -0.18 -3.00 10.02 -39.63 -0.40 -3.40 16 18 C -0.07 -1.14 10.03 -39.52 -0.40 -1.53 16 19 C -0.23 -3.75 9.03 -39.48 -0.36 -4.11 16 20 C 0.16 3.20 6.67 -38.68 -0.26 2.95 16 21 O -0.29 -5.77 9.23 -35.16 -0.32 -6.09 16 22 C 0.03 0.35 9.81 101.05 0.99 1.35 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.06 1.49 3.17 -51.93 -0.16 1.33 16 29 H 0.07 1.60 7.35 -51.93 -0.38 1.22 16 30 H 0.28 6.89 8.31 -40.82 -0.34 6.56 16 31 H 0.16 3.51 5.93 -52.49 -0.31 3.19 16 32 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 33 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 34 H 0.12 1.59 6.30 -52.49 -0.33 1.26 16 35 H 0.05 0.58 7.66 -51.93 -0.40 0.19 16 36 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 302.98 15.07 4.57 4.57 Total: -1.00 -30.40 302.98 -5.92 -36.32 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -4.85 Total: 4.74 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -1.38 Total: -5.85 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.52 Total: -33.69 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.50 Total: -21.99 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.27 Total: 15.91 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.40 -5.92 -36.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044372860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.851 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds