Wall clock time and date at job start Mon Mar 30 2020 00:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47389 * 2 1 4 4 N 1.46502 * 109.47560 * 179.97438 * 3 2 1 5 5 C 1.36904 * 120.00087 * 270.00337 * 4 3 2 6 6 H 1.07997 * 120.00223 * 144.36209 * 5 4 3 7 7 C 1.39021 * 119.99358 * 324.35679 * 5 4 3 8 8 N 1.31382 * 119.99425 * 155.63677 * 7 5 4 9 9 Si 1.86798 * 120.00591 * 335.63306 * 7 5 4 10 10 H 1.48502 * 109.46850 * 95.32983 * 9 7 5 11 11 H 1.48501 * 109.47091 * 215.32515 * 9 7 5 12 12 H 1.48498 * 109.47074 * 335.33013 * 9 7 5 13 13 C 1.34779 * 119.99728 * 89.99569 * 4 3 2 14 14 O 1.21626 * 119.99828 * 5.49151 * 13 4 3 15 15 C 1.47432 * 120.00023 * 185.48503 * 13 4 3 16 16 C 1.39768 * 120.19183 * 321.46469 * 15 13 4 17 17 C 1.37773 * 119.89624 * 179.97438 * 16 15 13 18 18 C 1.38555 * 120.31092 * 359.97438 * 17 16 15 19 19 C 1.38085 * 120.39710 * 0.02662 * 18 17 16 20 20 C 1.38675 * 120.08998 * 359.95138 * 19 18 17 21 21 O 1.35666 * 120.15339 * 179.97438 * 20 19 18 22 22 C 1.42904 * 116.99742 * 0.02562 * 21 20 19 23 23 H 1.09003 * 109.47331 * 59.99979 * 1 2 3 24 24 H 1.08998 * 109.47208 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46992 * 300.00133 * 1 2 3 26 26 H 1.09005 * 109.47502 * 239.99786 * 2 1 3 27 27 H 1.09003 * 109.47331 * 120.00021 * 2 1 3 28 28 H 1.08997 * 109.47266 * 59.99252 * 3 2 1 29 29 H 1.09003 * 109.46901 * 300.00284 * 3 2 1 30 30 H 0.97003 * 120.00280 * 179.97438 * 8 7 5 31 31 H 1.08000 * 120.05215 * 0.24599 * 16 15 13 32 32 H 1.08007 * 119.84149 * 179.97438 * 17 16 15 33 33 H 1.07997 * 119.80624 * 180.02562 * 18 17 16 34 34 H 1.08000 * 119.95188 * 179.97438 * 19 18 17 35 35 H 1.09005 * 109.46939 * 299.99862 * 22 21 20 36 36 H 1.08999 * 109.47147 * 59.99697 * 22 21 20 37 37 H 1.08995 * 109.46877 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1891 1.4426 1.1865 6 1 5.1173 0.8977 1.2746 7 6 3.6887 2.1443 2.2774 8 7 4.0287 1.7925 3.4967 9 14 2.5332 3.5874 2.0096 10 1 1.1271 3.1230 2.1223 11 1 2.7946 4.6280 3.0362 12 1 2.7591 4.1581 0.6574 13 6 4.1794 1.4422 -1.1663 14 8 3.5758 1.5428 -2.2175 15 6 5.6486 1.3202 -1.1687 16 6 6.4092 1.9663 -0.1901 17 6 7.7818 1.8477 -0.1977 18 6 8.4128 1.0901 -1.1712 19 6 7.6736 0.4466 -2.1439 20 6 6.2911 0.5543 -2.1516 21 8 5.5637 -0.0770 -3.1070 22 6 6.2873 -0.8380 -4.0763 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.6799 2.2823 4.2579 31 1 5.9213 2.5540 0.5735 32 1 8.3686 2.3477 0.5587 33 1 9.4892 1.0024 -1.1692 34 1 8.1730 -0.1418 -2.8995 35 1 6.9723 -0.1830 -4.6147 36 1 6.8538 -1.6219 -3.5736 37 1 5.5877 -1.2897 -4.7795 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044372860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:02:55 Heat of formation + Delta-G solvation = -51.639590 kcal Electronic energy + Delta-G solvation = -20455.794066 eV Core-core repulsion = 17391.474083 eV Total energy + Delta-G solvation = -3064.319983 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.48433 -40.09416 -38.11461 -37.10340 -34.78870 -33.60387 -32.00216 -30.95636 -28.25598 -27.53065 -26.90092 -24.17126 -23.00889 -22.60634 -21.06388 -19.66310 -18.38450 -18.12242 -17.37146 -16.75286 -16.58923 -16.32793 -15.89666 -15.61136 -15.47893 -14.88313 -14.68852 -14.40941 -14.29658 -14.03203 -13.38385 -13.32530 -13.17869 -12.94954 -12.60203 -12.53166 -12.44527 -12.19695 -11.97091 -11.91249 -11.79550 -11.54452 -11.04669 -10.45879 -9.82966 -9.71156 -9.08744 -8.51530 -6.05158 0.17792 0.57218 1.16846 1.30240 1.41399 1.99383 2.17379 2.45550 2.56260 2.81625 3.14690 3.89518 3.96475 4.05197 4.12833 4.25684 4.33434 4.35691 4.41302 4.48973 4.52942 4.57955 4.64428 4.70706 4.81259 4.90950 5.06866 5.11381 5.20089 5.27942 5.35693 5.48102 5.51081 5.66963 5.96197 6.05236 6.27570 6.55676 6.94871 7.41185 7.78639 8.61021 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018578 B = 0.008512 C = 0.006453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.772018 B = 3288.654153 C = 4337.933809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C 0.097 3.903 4 N -0.469 5.469 5 C -0.341 4.341 6 H 0.091 0.909 7 C 0.039 3.961 8 N -0.884 5.884 9 Si 0.913 3.087 10 H -0.257 1.257 11 H -0.278 1.278 12 H -0.276 1.276 13 C 0.517 3.483 14 O -0.612 6.612 15 C -0.179 4.179 16 C -0.042 4.042 17 C -0.177 4.177 18 C -0.055 4.055 19 C -0.222 4.222 20 C 0.148 3.852 21 O -0.331 6.331 22 C 0.016 3.984 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.281 0.719 31 H 0.134 0.866 32 H 0.147 0.853 33 H 0.167 0.833 34 H 0.163 0.837 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.463 -3.021 -7.658 9.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.162 4.162 3 C -0.026 4.026 4 N -0.189 5.189 5 C -0.468 4.468 6 H 0.108 0.892 7 C -0.167 4.167 8 N -0.520 5.520 9 Si 0.739 3.261 10 H -0.183 1.183 11 H -0.204 1.204 12 H -0.201 1.201 13 C 0.308 3.692 14 O -0.498 6.498 15 C -0.183 4.183 16 C -0.061 4.061 17 C -0.195 4.195 18 C -0.073 4.073 19 C -0.240 4.240 20 C 0.101 3.899 21 O -0.244 6.244 22 C -0.078 4.078 23 H 0.079 0.921 24 H 0.094 0.906 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.152 0.848 32 H 0.165 0.835 33 H 0.185 0.815 34 H 0.180 0.820 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.909 -2.959 -7.968 9.815 hybrid contribution -0.514 0.632 0.287 0.864 sum 4.395 -2.327 -7.680 9.150 Atomic orbital electron populations 1.21671 0.92976 1.02973 1.02114 1.21681 0.97658 0.95715 1.01163 1.21781 0.81540 0.98487 1.00758 1.43739 1.04787 1.64991 1.05368 1.19005 1.09225 1.31759 0.86786 0.89184 1.25647 0.98188 0.98568 0.94264 1.69827 1.44851 1.38721 0.98610 0.86361 0.80359 0.81124 0.78228 1.18305 1.20447 1.20115 1.18517 0.87929 0.79389 0.83320 1.90584 1.70793 1.55964 1.32500 1.19366 0.93133 1.06229 0.99553 1.21741 0.94653 0.95444 0.94263 1.21331 0.93349 1.03251 1.01617 1.21480 1.01396 0.92738 0.91651 1.21436 0.90667 1.07440 1.04454 1.19279 0.91141 0.91611 0.87901 1.86205 1.36934 1.62426 1.38822 1.23380 0.98697 0.95089 0.90608 0.92057 0.90569 0.92431 0.93372 0.92587 0.91853 0.91696 0.90899 0.84848 0.83544 0.81518 0.81989 0.91043 0.91139 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 9.91 71.98 0.71 -3.69 16 2 C -0.12 -5.09 6.26 30.59 0.19 -4.90 16 3 C 0.10 4.55 4.28 86.38 0.37 4.92 16 4 N -0.47 -24.33 2.20 -639.25 -1.40 -25.74 16 5 C -0.34 -18.19 6.97 84.09 0.59 -17.60 16 6 H 0.09 5.11 6.19 -2.91 -0.02 5.09 16 7 C 0.04 2.03 5.28 84.95 0.45 2.48 16 8 N -0.88 -48.08 13.95 21.68 0.30 -47.78 16 9 Si 0.91 42.11 25.11 68.60 1.72 43.83 16 10 H -0.26 -11.13 6.64 99.48 0.66 -10.47 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 12 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 13 C 0.52 27.25 7.16 86.66 0.62 27.87 16 14 O -0.61 -34.50 15.64 11.62 0.18 -34.32 16 15 C -0.18 -8.30 5.39 -20.01 -0.11 -8.41 16 16 C -0.04 -1.78 7.65 22.53 0.17 -1.61 16 17 C -0.18 -5.73 10.02 22.24 0.22 -5.51 16 18 C -0.05 -1.45 10.03 22.31 0.22 -1.23 16 19 C -0.22 -6.45 9.03 22.34 0.20 -6.25 16 20 C 0.15 5.84 6.67 22.85 0.15 5.99 16 21 O -0.33 -12.95 9.23 -74.09 -0.68 -13.64 16 22 C 0.02 0.39 9.81 113.37 1.11 1.50 16 23 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 27 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.06 2.95 3.17 -2.39 -0.01 2.95 16 29 H 0.06 3.07 7.35 -2.39 -0.02 3.05 16 30 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 31 H 0.13 6.20 5.93 -2.91 -0.02 6.18 16 32 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 33 H 0.17 2.85 8.06 -2.91 -0.02 2.82 16 34 H 0.16 3.37 6.30 -2.91 -0.02 3.35 16 35 H 0.07 1.41 7.66 -2.38 -0.02 1.39 16 36 H 0.07 1.39 7.66 -2.39 -0.02 1.37 16 37 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -69.17 302.98 6.05 -63.12 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 1.03 Total: 20.97 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 4.91 Total: -6.44 kcal Atomic # 7 Polarization: -72.41 SS G_CDS: -1.10 Total: -73.52 kcal Atomic # 8 Polarization: -47.45 SS G_CDS: -0.50 Total: -47.96 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.72 Total: 43.83 kcal Total: -69.17 6.05 -63.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044372860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.478 kcal (2) G-P(sol) polarization free energy of solvation -69.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds