Wall clock time and date at job start Mon Mar 30 2020 00:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47535 * 2 1 4 4 N 1.46497 * 109.47257 * 186.51640 * 3 2 1 5 5 C 1.36900 * 119.99781 * 283.36334 * 4 3 2 6 6 H 1.08003 * 119.99757 * 235.66000 * 5 4 3 7 7 C 1.39027 * 120.00458 * 55.65913 * 5 4 3 8 8 N 1.31383 * 119.99338 * 41.46415 * 7 5 4 9 9 Si 1.86792 * 120.00089 * 221.46511 * 7 5 4 10 10 H 1.48500 * 109.47383 * 59.99902 * 9 7 5 11 11 H 1.48507 * 109.47009 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47297 * 299.99568 * 9 7 5 13 13 C 1.34776 * 120.00338 * 103.35977 * 4 3 2 14 14 O 1.21618 * 120.00269 * 187.00207 * 13 4 3 15 15 C 1.47494 * 119.99781 * 7.00282 * 13 4 3 16 16 C 1.39794 * 120.09564 * 307.03209 * 15 13 4 17 17 C 1.37690 * 119.90971 * 180.23073 * 16 15 13 18 18 C 1.39011 * 120.08783 * 359.52096 * 17 16 15 19 19 O 1.35720 * 119.90427 * 180.25639 * 18 17 16 20 20 C 1.42896 * 116.99970 * 180.02562 * 19 18 17 21 21 C 1.39011 * 120.19118 * 0.23183 * 18 17 16 22 22 C 1.37685 * 120.09593 * 359.97438 * 21 18 17 23 23 H 1.09002 * 109.47054 * 60.00161 * 1 2 3 24 24 H 1.08998 * 109.47704 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47249 * 300.00712 * 1 2 3 26 26 H 1.09003 * 109.47249 * 239.99288 * 2 1 3 27 27 H 1.09008 * 109.46734 * 119.99604 * 2 1 3 28 28 H 1.08994 * 109.47480 * 66.51357 * 3 2 1 29 29 H 1.09002 * 109.46843 * 306.51414 * 3 2 1 30 30 H 0.96998 * 119.99392 * 180.02562 * 8 7 5 31 31 H 1.08005 * 120.05064 * 0.02562 * 16 15 13 32 32 H 1.07993 * 119.95681 * 179.79312 * 17 16 15 33 33 H 1.08996 * 109.47401 * 179.97438 * 20 19 18 34 34 H 1.08999 * 109.47139 * 299.99385 * 20 19 18 35 35 H 1.09005 * 109.47767 * 59.99265 * 20 19 18 36 36 H 1.08003 * 119.95330 * 180.02562 * 21 18 17 37 37 H 1.07997 * 120.05188 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.4967 1.4453 -0.1567 5 6 4.3000 1.1292 0.9057 6 1 5.0646 1.8202 1.2290 7 6 4.1318 -0.0812 1.5686 8 7 3.9070 -1.1795 0.8835 9 14 4.2253 -0.1459 3.4331 10 1 3.1746 0.7293 4.0121 11 1 4.0134 -1.5426 3.8911 12 1 5.5618 0.3241 3.8783 13 6 4.0458 1.7591 -1.3469 14 8 5.2444 1.6389 -1.5142 15 6 3.1931 2.2484 -2.4464 16 6 2.0689 1.5168 -2.8405 17 6 1.2783 1.9747 -3.8705 18 6 1.5910 3.1678 -4.5117 19 8 0.8061 3.6183 -5.5232 20 6 1.1851 4.8509 -6.1388 21 6 2.7050 3.9011 -4.1197 22 6 3.5034 3.4483 -3.0934 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.7752 1.9215 0.9425 29 1 1.5847 1.9888 -0.8260 30 1 3.7893 -2.0240 1.3460 31 1 1.8228 0.5920 -2.3399 32 1 0.4116 1.4085 -4.1778 33 1 0.4759 5.0953 -6.9295 34 1 1.1851 5.6450 -5.3922 35 1 2.1837 4.7526 -6.5645 36 1 2.9441 4.8277 -4.6202 37 1 4.3684 4.0187 -2.7891 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044373265.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:02:59 Heat of formation + Delta-G solvation = -34.467792 kcal Electronic energy + Delta-G solvation = -20145.134521 eV Core-core repulsion = 17081.559162 eV Total energy + Delta-G solvation = -3063.575358 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.05079 -38.67266 -36.54546 -35.26630 -32.46074 -31.51824 -30.87387 -29.88750 -27.37090 -25.74023 -24.75857 -22.48648 -22.12613 -20.70148 -19.33139 -18.01129 -16.98767 -16.32093 -15.81733 -15.70326 -15.02773 -14.76161 -14.40149 -13.80170 -13.68889 -13.33687 -13.18414 -13.01307 -12.48401 -12.33735 -12.04272 -11.83979 -11.69688 -11.40363 -11.21502 -10.97549 -10.81931 -10.70764 -10.56319 -10.35025 -10.25643 -9.85750 -8.72266 -8.65082 -8.21010 -7.83640 -7.26730 -6.37775 -3.98437 1.53468 1.63991 3.19719 3.28043 3.31512 3.32446 3.78577 4.19310 4.28760 4.78070 4.90262 4.93500 5.06066 5.07274 5.19159 5.36219 5.54809 5.64704 5.73467 5.78248 5.83894 5.90887 6.08552 6.21565 6.28808 6.47205 6.49421 6.52469 6.58896 6.67898 6.90572 6.94292 7.06564 7.43955 7.50601 7.61472 8.45171 8.60276 9.25819 9.37483 10.12200 10.59916 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.030782 B = 0.005704 C = 0.005107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.418242 B = 4907.903679 C = 5481.581911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.137 4.137 3 C 0.107 3.893 4 N -0.436 5.436 5 C -0.354 4.354 6 H 0.082 0.918 7 C 0.075 3.925 8 N -0.812 5.812 9 Si 0.884 3.116 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.271 1.271 13 C 0.507 3.493 14 O -0.563 6.563 15 C -0.133 4.133 16 C -0.056 4.056 17 C -0.158 4.158 18 C 0.124 3.876 19 O -0.320 6.320 20 C 0.028 3.972 21 C -0.215 4.215 22 C -0.045 4.045 23 H 0.045 0.955 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.267 0.733 31 H 0.141 0.859 32 H 0.130 0.870 33 H 0.096 0.904 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.126 0.874 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.401 7.387 -7.897 14.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.175 4.175 3 C -0.017 4.017 4 N -0.156 5.156 5 C -0.480 4.480 6 H 0.100 0.900 7 C -0.137 4.137 8 N -0.443 5.443 9 Si 0.709 3.291 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.195 1.195 13 C 0.295 3.705 14 O -0.445 6.445 15 C -0.137 4.137 16 C -0.075 4.075 17 C -0.177 4.177 18 C 0.079 3.921 19 O -0.233 6.233 20 C -0.067 4.067 21 C -0.234 4.234 22 C -0.064 4.064 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.158 0.842 32 H 0.148 0.852 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.144 0.856 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.987 7.020 -8.036 13.951 hybrid contribution 0.108 0.010 0.860 0.867 sum -8.879 7.030 -7.176 13.407 Atomic orbital electron populations 1.21834 0.97705 1.00679 1.00767 1.22122 0.92706 0.97926 1.04763 1.21779 0.83126 0.96360 1.00463 1.43266 1.04116 1.60482 1.07696 1.18820 1.19975 1.02502 1.06692 0.90032 1.25391 0.94784 0.94023 0.99477 1.70408 1.39332 0.98062 1.36537 0.86714 0.79503 0.77181 0.85672 1.19617 1.21134 1.19549 1.18544 0.87778 0.82129 0.82024 1.90633 1.15564 1.57040 1.81275 1.20458 0.96928 0.96458 0.99818 1.21452 0.92129 0.99481 0.94397 1.20310 1.02791 0.95814 0.98759 1.19149 0.90425 0.93934 0.88596 1.85996 1.50969 1.39480 1.46898 1.23012 1.01498 0.84684 0.97523 1.21079 0.97770 1.02186 1.02347 1.20981 0.97661 0.94563 0.93210 0.93547 0.93426 0.93413 0.91976 0.89456 0.92340 0.92134 0.92274 0.84158 0.85243 0.88577 0.92717 0.92717 0.85603 0.85483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.91 37.16 0.37 -2.01 16 2 C -0.14 -2.75 4.36 -26.73 -0.12 -2.87 16 3 C 0.11 2.24 4.82 -4.05 -0.02 2.22 16 4 N -0.44 -11.09 2.57 -116.01 -0.30 -11.38 16 5 C -0.35 -9.82 8.42 -15.00 -0.13 -9.95 16 6 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 7 C 0.07 1.97 3.92 -17.45 -0.07 1.90 16 8 N -0.81 -21.84 11.37 55.50 0.63 -21.21 16 9 Si 0.88 19.81 29.69 -169.99 -5.05 14.77 16 10 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 C 0.51 13.06 7.12 -12.49 -0.09 12.97 16 14 O -0.56 -16.85 17.05 5.26 0.09 -16.76 16 15 C -0.13 -2.75 4.89 -104.96 -0.51 -3.27 16 16 C -0.06 -1.02 7.43 -39.20 -0.29 -1.31 16 17 C -0.16 -2.47 9.97 -39.50 -0.39 -2.87 16 18 C 0.12 1.87 6.70 -39.01 -0.26 1.60 16 19 O -0.32 -4.22 10.48 -18.86 -0.20 -4.42 16 20 C 0.03 0.25 9.81 101.05 0.99 1.24 16 21 C -0.22 -3.20 9.01 -39.50 -0.36 -3.56 16 22 C -0.05 -0.81 9.75 -39.20 -0.38 -1.19 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 1.34 6.60 -51.93 -0.34 1.00 16 27 H 0.09 1.98 5.33 -51.92 -0.28 1.71 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.06 1.14 4.95 -51.93 -0.26 0.89 16 30 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 31 H 0.14 2.58 5.06 -52.48 -0.27 2.31 16 32 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.44 7.65 -51.93 -0.40 0.04 16 35 H 0.05 0.45 7.65 -51.93 -0.40 0.05 16 36 H 0.13 1.48 6.28 -52.48 -0.33 1.15 16 37 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 305.28 15.07 4.60 4.60 Total: -1.00 -32.06 305.28 -6.26 -38.32 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -4.78 Total: 3.17 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -1.26 Total: -7.09 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.33 Total: -32.59 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.11 Total: -21.18 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.05 Total: 14.77 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.06 -6.26 -38.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044373265.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.850 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds