Wall clock time and date at job start Sun Mar 29 2020 23:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46936 * 2 1 4 4 N 1.46504 * 109.47235 * 119.99881 * 2 1 3 5 5 C 1.46508 * 119.99973 * 294.09583 * 4 2 1 6 6 C 1.50696 * 109.47301 * 270.00119 * 5 4 2 7 7 H 1.08001 * 120.00001 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99952 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99939 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99971 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47563 * 89.99799 * 10 8 6 12 12 H 1.48503 * 109.46910 * 209.99866 * 10 8 6 13 13 H 1.48496 * 109.46879 * 329.99017 * 10 8 6 14 14 C 1.34773 * 119.99915 * 114.09898 * 4 2 1 15 15 O 1.21587 * 119.99779 * 184.18986 * 14 4 2 16 16 C 1.47535 * 120.00115 * 4.18732 * 14 4 2 17 17 C 1.39701 * 120.19228 * 304.45086 * 16 14 4 18 18 C 1.37784 * 119.90948 * 179.97438 * 17 16 14 19 19 C 1.38549 * 120.30079 * 359.97438 * 18 17 16 20 20 C 1.38058 * 120.38812 * 0.02562 * 19 18 17 21 21 C 1.38711 * 120.08474 * 0.02562 * 20 19 18 22 22 O 1.35653 * 120.14790 * 180.02562 * 21 20 19 23 23 H 1.08999 * 109.47324 * 299.99704 * 1 2 3 24 24 H 1.08996 * 109.47421 * 60.00078 * 1 2 3 25 25 H 1.09005 * 109.46878 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47617 * 239.99844 * 2 1 3 27 27 H 1.09000 * 109.47182 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47002 * 300.00179 * 3 2 1 29 29 H 1.08999 * 109.46873 * 60.00020 * 3 2 1 30 30 H 1.09002 * 109.46765 * 30.00448 * 5 4 2 31 31 H 1.08998 * 109.46899 * 149.99700 * 5 4 2 32 32 H 0.97002 * 119.99848 * 180.02562 * 9 8 6 33 33 H 1.08003 * 120.04698 * 0.25663 * 17 16 14 34 34 H 1.07994 * 119.85372 * 179.97438 * 18 17 16 35 35 H 1.08000 * 119.81080 * 179.97438 * 19 18 17 36 36 H 1.08001 * 119.95930 * 180.02562 * 20 19 18 37 37 H 0.96706 * 113.99430 * 90.00285 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7741 -0.1192 2.5230 6 6 2.9132 0.7953 2.8935 7 1 3.7364 0.9371 2.2090 8 6 2.9038 1.4518 4.1058 9 7 3.8981 2.2495 4.4294 10 14 1.4794 1.2072 5.2894 11 1 1.7758 0.0654 6.1915 12 1 1.2893 2.4392 6.0964 13 1 0.2409 0.9227 4.5212 14 6 2.6923 -1.8515 1.0761 15 8 3.0311 -2.4634 2.0707 16 6 3.0188 -2.3799 -0.2621 17 6 2.0056 -2.5922 -1.2001 18 6 2.3172 -3.0854 -2.4484 19 6 3.6319 -3.3717 -2.7786 20 6 4.6430 -3.1666 -1.8612 21 6 4.3473 -2.6717 -0.5995 22 8 5.3398 -2.4693 0.3027 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1299 1.4426 0.0005 28 1 1.6765 1.9563 -0.8899 29 1 1.6765 1.9563 0.8900 30 1 0.8431 0.4475 2.5087 31 1 1.6995 -0.9221 3.2562 32 1 3.8916 2.7111 5.2825 33 1 0.9799 -2.3657 -0.9488 34 1 1.5332 -3.2495 -3.1726 35 1 3.8672 -3.7584 -3.7592 36 1 5.6655 -3.3918 -2.1261 37 1 5.7313 -1.5858 0.2651 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044414984.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:59:42 Heat of formation + Delta-G solvation = -71.715106 kcal Electronic energy + Delta-G solvation = -20485.711924 eV Core-core repulsion = 17420.521401 eV Total energy + Delta-G solvation = -3065.190523 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.60418 -39.74513 -37.86106 -37.42507 -34.91663 -32.65884 -32.48360 -30.82256 -29.71094 -28.00579 -25.41904 -24.04641 -23.33602 -22.54076 -20.30252 -19.15252 -19.08323 -18.41831 -17.28277 -16.96962 -16.62966 -16.06573 -15.77145 -15.40855 -15.18616 -14.86501 -14.54815 -14.52035 -13.92478 -13.67854 -13.46365 -13.25359 -13.15260 -12.92149 -12.70016 -12.57243 -12.42755 -12.32993 -11.96102 -11.75796 -11.66456 -11.57185 -10.81880 -10.75082 -9.88571 -9.67163 -9.43931 -8.32763 -6.35248 0.00783 0.28738 1.29447 1.34206 1.41373 1.73504 2.23678 2.30042 2.67481 3.01099 3.22710 3.54553 3.91086 3.96762 4.15147 4.23975 4.36877 4.43484 4.47485 4.64348 4.73476 4.84079 4.85551 4.89567 4.95188 5.01672 5.06464 5.32825 5.34400 5.40115 5.45179 5.46803 5.54072 5.66510 5.85539 6.25614 6.63115 6.64834 6.70423 7.20889 7.35853 8.83664 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024772 B = 0.006711 C = 0.006040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.027136 B = 4171.037328 C = 4634.374743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.118 3.882 3 C -0.147 4.147 4 N -0.584 5.584 5 C 0.225 3.775 6 C -0.519 4.519 7 H 0.034 0.966 8 C 0.013 3.987 9 N -0.943 5.943 10 Si 0.938 3.062 11 H -0.281 1.281 12 H -0.274 1.274 13 H -0.240 1.240 14 C 0.545 3.455 15 O -0.588 6.588 16 C -0.174 4.174 17 C -0.081 4.081 18 C -0.121 4.121 19 C -0.076 4.076 20 C -0.151 4.151 21 C 0.120 3.880 22 O -0.512 6.512 23 H 0.047 0.953 24 H 0.101 0.899 25 H 0.064 0.936 26 H 0.110 0.890 27 H 0.028 0.972 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.011 0.989 32 H 0.267 0.733 33 H 0.144 0.856 34 H 0.172 0.828 35 H 0.172 0.828 36 H 0.151 0.849 37 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.113 -7.077 -19.895 22.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.016 3.984 3 C -0.205 4.205 4 N -0.315 5.315 5 C 0.103 3.897 6 C -0.558 4.558 7 H 0.053 0.947 8 C -0.185 4.185 9 N -0.584 5.584 10 Si 0.761 3.239 11 H -0.206 1.206 12 H -0.199 1.199 13 H -0.163 1.163 14 C 0.334 3.666 15 O -0.469 6.469 16 C -0.177 4.177 17 C -0.099 4.099 18 C -0.139 4.139 19 C -0.094 4.094 20 C -0.169 4.169 21 C 0.075 3.925 22 O -0.325 6.325 23 H 0.066 0.934 24 H 0.120 0.880 25 H 0.083 0.917 26 H 0.128 0.872 27 H 0.048 0.952 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.029 0.971 32 H 0.076 0.924 33 H 0.161 0.839 34 H 0.190 0.810 35 H 0.189 0.811 36 H 0.168 0.832 37 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -7.019 -7.804 -19.072 21.770 hybrid contribution 0.397 0.811 1.544 1.789 sum -6.622 -6.993 -17.528 19.999 Atomic orbital electron populations 1.22190 0.93014 1.02816 1.03575 1.21623 0.95886 0.93661 0.87219 1.22024 1.00022 0.95900 1.02542 1.48080 1.53794 1.21147 1.08432 1.19280 0.96330 0.92710 0.81338 1.21449 1.06127 1.25380 1.02853 0.94727 1.25734 0.98804 0.94505 0.99427 1.70033 1.33604 1.31024 1.23717 0.85859 0.80752 0.77842 0.79423 1.20648 1.19865 1.16287 1.18812 0.77472 0.81072 0.89249 1.90724 1.54756 1.60449 1.41018 1.20423 0.96067 1.06813 0.94430 1.21456 0.98313 0.97281 0.92900 1.21540 0.98053 0.98459 0.95816 1.21662 0.91745 0.95890 1.00097 1.21641 1.02375 1.01846 0.91085 1.18913 0.86001 0.98185 0.89450 1.84759 1.51089 1.38351 1.58255 0.93366 0.88002 0.91710 0.87241 0.95231 0.88984 0.93440 0.93140 0.97063 0.92414 0.83873 0.81040 0.81105 0.83170 0.74136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 9.04 71.98 0.65 -3.14 16 2 C 0.12 3.67 2.51 44.99 0.11 3.79 16 3 C -0.15 -4.91 8.34 71.98 0.60 -4.31 16 4 N -0.58 -24.93 2.38 -805.87 -1.92 -26.85 16 5 C 0.23 11.34 3.54 85.63 0.30 11.65 16 6 C -0.52 -30.66 8.40 25.60 0.22 -30.45 16 7 H 0.03 2.26 7.76 -2.91 -0.02 2.24 16 8 C 0.01 0.79 5.47 84.65 0.46 1.25 16 9 N -0.94 -59.95 13.96 21.45 0.30 -59.65 16 10 Si 0.94 45.40 27.47 68.60 1.88 47.28 16 11 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 12 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 13 H -0.24 -10.46 6.54 99.48 0.65 -9.81 16 14 C 0.55 24.71 6.80 86.70 0.59 25.30 16 15 O -0.59 -33.21 16.37 -2.45 -0.04 -33.25 16 16 C -0.17 -5.96 4.83 -20.01 -0.10 -6.06 16 17 C -0.08 -1.92 7.43 22.52 0.17 -1.75 16 18 C -0.12 -1.90 10.02 22.24 0.22 -1.68 16 19 C -0.08 -1.17 10.03 22.30 0.22 -0.95 16 20 C -0.15 -3.36 9.98 22.34 0.22 -3.14 16 21 C 0.12 3.90 6.71 22.84 0.15 4.05 16 22 O -0.51 -19.15 12.74 -88.14 -1.12 -20.27 16 23 H 0.05 1.33 6.91 -2.39 -0.02 1.31 16 24 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.06 1.41 7.24 -2.38 -0.02 1.39 16 26 H 0.11 2.89 4.65 -2.39 -0.01 2.88 16 27 H 0.03 1.12 7.95 -2.39 -0.02 1.10 16 28 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.05 1.87 6.93 -2.39 -0.02 1.85 16 30 H 0.05 2.34 5.77 -2.39 -0.01 2.33 16 31 H 0.01 0.62 6.79 -2.39 -0.02 0.61 16 32 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 33 H 0.14 2.96 6.36 -2.91 -0.02 2.94 16 34 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 36 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 37 H 0.40 12.40 9.06 -74.05 -0.67 11.73 16 Total: -1.00 -83.90 304.98 3.29 -80.61 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.36 Total: 17.56 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 3.83 Total: -5.44 kcal Atomic # 7 Polarization: -84.88 SS G_CDS: -1.62 Total: -86.50 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -1.16 Total: -53.52 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.28 kcal Total: -83.90 3.29 -80.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044414984.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.894 kcal (2) G-P(sol) polarization free energy of solvation -83.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds