Wall clock time and date at job start Sun Mar 29 2020 23:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47065 * 2 1 4 4 C 1.53000 * 109.47169 * 119.99916 * 2 1 3 5 5 O 1.45199 * 109.47033 * 64.99884 * 4 2 1 6 6 C 1.34650 * 116.99697 * 179.97438 * 5 4 2 7 7 O 1.21499 * 120.00185 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99725 * 180.02562 * 6 5 4 9 9 C 1.39251 * 119.99894 * 184.29224 * 8 6 5 10 10 C 1.39478 * 119.83570 * 324.71426 * 9 8 6 11 11 C 1.36380 * 120.17035 * 180.27782 * 10 9 8 12 12 C 1.40868 * 119.82707 * 359.47084 * 11 10 9 13 13 C 1.41152 * 120.16280 * 180.23199 * 12 11 10 14 14 H 1.08001 * 120.00087 * 215.05443 * 13 12 11 15 15 C 1.39895 * 120.00019 * 35.05862 * 13 12 11 16 16 N 1.30872 * 119.99877 * 355.54224 * 15 13 12 17 17 Si 1.86801 * 120.00036 * 175.53927 * 15 13 12 18 18 H 1.48494 * 109.47275 * 90.00045 * 17 15 13 19 19 H 1.48500 * 109.47135 * 210.00237 * 17 15 13 20 20 H 1.48507 * 109.47198 * 329.99903 * 17 15 13 21 21 C 1.40870 * 119.66828 * 0.54507 * 12 11 10 22 22 C 1.36376 * 119.83180 * 359.71001 * 21 12 11 23 23 H 1.09004 * 109.47533 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47178 * 300.00072 * 1 2 3 25 25 H 1.08997 * 109.47583 * 60.00082 * 1 2 3 26 26 H 1.08998 * 109.47178 * 239.99928 * 2 1 3 27 27 H 1.08999 * 109.47437 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47082 * 299.99644 * 3 2 1 29 29 H 1.08998 * 109.47182 * 59.99930 * 3 2 1 30 30 H 1.08995 * 109.46871 * 304.99708 * 4 2 1 31 31 H 1.09003 * 109.47102 * 185.00070 * 4 2 1 32 32 H 0.97002 * 120.00112 * 4.29336 * 8 6 5 33 33 H 1.07998 * 119.91324 * 359.97438 * 10 9 8 34 34 H 1.07993 * 120.08503 * 179.72500 * 11 10 9 35 35 H 0.97002 * 120.00228 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.08160 * 179.68401 * 21 12 11 37 37 H 1.07995 * 119.91616 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.6558 -2.1203 1.1911 6 6 2.0310 -2.9005 2.2224 7 8 2.6616 -2.4252 3.1458 8 7 1.7069 -4.2087 2.2303 9 6 2.0162 -4.9959 3.3366 10 6 3.1907 -4.7588 4.0504 11 6 3.5032 -5.5292 5.1315 12 6 2.6305 -6.5595 5.5333 13 6 2.9445 -7.3580 6.6541 14 1 2.6776 -8.4045 6.6634 15 6 3.6013 -6.7939 7.7530 16 7 4.0023 -5.5490 7.7072 17 14 3.9057 -7.8175 9.2856 18 1 5.2171 -8.5045 9.1696 19 1 3.9142 -6.9327 10.4782 20 1 2.8278 -8.8291 9.4275 21 6 1.4463 -6.7931 4.8071 22 6 1.1499 -6.0177 3.7250 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6054 -0.2617 2.1369 31 1 3.1263 -0.6443 1.2952 32 1 1.2582 -4.6019 1.4655 33 1 3.8569 -3.9662 3.7433 34 1 4.4151 -5.3473 5.6805 35 1 4.4574 -5.1577 8.4692 36 1 0.7750 -7.5845 5.1062 37 1 0.2426 -6.1959 3.1670 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048521452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:55 Heat of formation + Delta-G solvation = -74.210034 kcal Electronic energy + Delta-G solvation = -19069.970065 eV Core-core repulsion = 16004.671354 eV Total energy + Delta-G solvation = -3065.298711 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.22670 -38.07282 -36.64363 -34.95411 -34.45494 -32.89814 -29.53367 -29.02378 -27.36870 -26.77473 -24.85406 -21.91059 -21.22026 -20.43509 -20.03895 -18.23842 -17.29522 -16.71467 -16.32576 -15.75061 -15.04439 -14.85699 -14.27521 -13.96953 -13.58581 -13.13783 -12.82845 -12.67148 -12.53826 -12.31406 -12.12574 -11.77615 -11.49271 -11.32886 -11.28809 -11.15254 -10.94150 -10.87113 -10.53154 -10.32146 -10.12769 -9.92828 -9.71295 -9.10170 -8.83949 -7.54117 -6.92314 -6.60104 -4.34347 2.47052 2.71759 3.03362 3.10728 3.10840 3.16261 3.49141 3.98671 4.47362 4.65810 4.70951 4.71810 5.03179 5.33761 5.34311 5.43393 5.50663 5.63805 5.65436 5.72891 5.83434 6.03129 6.12073 6.13142 6.33750 6.55884 6.79987 6.99486 7.03663 7.18994 7.27786 7.62712 7.65623 7.96013 8.08241 8.16395 8.31764 8.66107 8.86132 8.92618 9.02410 10.30888 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.042692 B = 0.003641 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.697631 B = 7688.523970 C = 8142.302076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.145 4.145 4 C 0.091 3.909 5 O -0.377 6.377 6 C 0.634 3.366 7 O -0.559 6.559 8 N -0.630 5.630 9 C 0.013 3.987 10 C -0.093 4.093 11 C -0.144 4.144 12 C 0.101 3.899 13 C -0.462 4.462 14 H 0.076 0.924 15 C 0.069 3.931 16 N -0.807 5.807 17 Si 0.916 3.084 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.263 1.263 21 C -0.203 4.203 22 C -0.108 4.108 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.401 0.599 33 H 0.109 0.891 34 H 0.131 0.869 35 H 0.279 0.721 36 H 0.099 0.901 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.897 7.995 -11.885 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.203 4.203 4 C 0.016 3.984 5 O -0.292 6.292 6 C 0.387 3.613 7 O -0.447 6.447 8 N -0.280 5.280 9 C -0.078 4.078 10 C -0.113 4.113 11 C -0.164 4.164 12 C 0.099 3.901 13 C -0.493 4.493 14 H 0.094 0.906 15 C -0.147 4.147 16 N -0.433 5.433 17 Si 0.741 3.259 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.187 1.187 21 C -0.223 4.223 22 C -0.129 4.129 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.236 0.764 33 H 0.127 0.873 34 H 0.149 0.851 35 H 0.090 0.910 36 H 0.117 0.883 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.473 8.513 -11.305 14.572 hybrid contribution -0.115 -0.399 0.494 0.645 sum -3.588 8.114 -10.811 13.986 Atomic orbital electron populations 1.21827 0.94411 1.02577 1.01625 1.21169 0.96963 0.95804 0.97523 1.21771 1.01358 0.94727 1.02425 1.22983 1.00127 0.76519 0.98746 1.86168 1.74848 1.22630 1.45511 1.18226 0.79704 0.82561 0.80829 1.90998 1.43150 1.73858 1.36683 1.41587 1.61660 1.04859 1.19866 1.17100 0.98553 0.98393 0.93738 1.20674 0.94729 0.99088 0.96769 1.21295 1.01055 0.98236 0.95772 1.17744 0.89487 0.91953 0.90936 1.19486 1.32974 0.97289 0.99518 0.90561 1.25903 0.93143 0.95051 1.00579 1.69788 1.29604 1.12712 1.31226 0.86194 0.79488 0.80076 0.80185 1.19514 1.20303 1.18746 1.20690 0.98670 1.03498 0.99483 1.20050 0.96955 0.97723 0.98144 0.91835 0.92648 0.92615 0.90122 0.92242 0.91789 0.92214 0.91288 0.91350 0.76447 0.87335 0.85109 0.91034 0.88315 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.09 37.16 0.34 -1.02 16 2 C -0.10 -0.92 3.16 -90.62 -0.29 -1.21 16 3 C -0.15 -1.12 9.19 37.16 0.34 -0.78 16 4 C 0.09 1.19 4.85 37.16 0.18 1.37 16 5 O -0.38 -5.93 9.81 -40.35 -0.40 -6.32 16 6 C 0.63 12.36 8.58 54.05 0.46 12.82 16 7 O -0.56 -12.94 13.55 -19.27 -0.26 -13.20 16 8 N -0.63 -11.86 5.31 -14.14 -0.08 -11.94 16 9 C 0.01 0.30 6.31 -83.57 -0.53 -0.23 16 10 C -0.09 -2.33 8.61 -39.79 -0.34 -2.68 16 11 C -0.14 -3.86 8.61 -39.26 -0.34 -4.20 16 12 C 0.10 2.72 5.55 -106.80 -0.59 2.12 16 13 C -0.46 -12.29 9.02 -37.86 -0.34 -12.63 16 14 H 0.08 1.93 7.85 -52.49 -0.41 1.51 16 15 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 16 N -0.81 -21.52 10.61 55.54 0.59 -20.93 16 17 Si 0.92 19.08 29.56 -169.99 -5.03 14.06 16 18 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 19 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 21 C -0.20 -4.90 9.74 -39.26 -0.38 -5.28 16 22 C -0.11 -2.38 9.90 -39.79 -0.39 -2.77 16 23 H 0.06 0.65 7.82 -51.93 -0.41 0.25 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.40 6.04 8.93 -40.82 -0.36 5.68 16 33 H 0.11 2.76 6.22 -52.49 -0.33 2.43 16 34 H 0.13 3.67 6.15 -52.49 -0.32 3.35 16 35 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 36 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 37 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 314.71 15.07 4.74 4.74 Total: -1.00 -30.00 314.71 -7.59 -37.59 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -5.19 Total: 8.80 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -1.98 Total: -12.81 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.51 Total: -32.87 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.66 Total: -19.52 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.00 -7.59 -37.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048521452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.616 kcal (2) G-P(sol) polarization free energy of solvation -30.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds