Wall clock time and date at job start Sun Mar 29 2020 23:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47065 * 2 1 4 4 C 1.53000 * 109.47169 * 119.99916 * 2 1 3 5 5 O 1.45199 * 109.47033 * 64.99884 * 4 2 1 6 6 C 1.34650 * 116.99697 * 179.97438 * 5 4 2 7 7 O 1.21499 * 120.00185 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99725 * 180.02562 * 6 5 4 9 9 C 1.39251 * 119.99894 * 184.29224 * 8 6 5 10 10 C 1.39478 * 119.83570 * 324.71426 * 9 8 6 11 11 C 1.36380 * 120.17035 * 180.27782 * 10 9 8 12 12 C 1.40868 * 119.82707 * 359.47084 * 11 10 9 13 13 C 1.41152 * 120.16280 * 180.23199 * 12 11 10 14 14 H 1.08001 * 120.00087 * 215.05443 * 13 12 11 15 15 C 1.39895 * 120.00019 * 35.05862 * 13 12 11 16 16 N 1.30872 * 119.99877 * 355.54224 * 15 13 12 17 17 Si 1.86801 * 120.00036 * 175.53927 * 15 13 12 18 18 H 1.48494 * 109.47275 * 90.00045 * 17 15 13 19 19 H 1.48500 * 109.47135 * 210.00237 * 17 15 13 20 20 H 1.48507 * 109.47198 * 329.99903 * 17 15 13 21 21 C 1.40870 * 119.66828 * 0.54507 * 12 11 10 22 22 C 1.36376 * 119.83180 * 359.71001 * 21 12 11 23 23 H 1.09004 * 109.47533 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47178 * 300.00072 * 1 2 3 25 25 H 1.08997 * 109.47583 * 60.00082 * 1 2 3 26 26 H 1.08998 * 109.47178 * 239.99928 * 2 1 3 27 27 H 1.08999 * 109.47437 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47082 * 299.99644 * 3 2 1 29 29 H 1.08998 * 109.47182 * 59.99930 * 3 2 1 30 30 H 1.08995 * 109.46871 * 304.99708 * 4 2 1 31 31 H 1.09003 * 109.47102 * 185.00070 * 4 2 1 32 32 H 0.97002 * 120.00112 * 4.29336 * 8 6 5 33 33 H 1.07998 * 119.91324 * 359.97438 * 10 9 8 34 34 H 1.07993 * 120.08503 * 179.72500 * 11 10 9 35 35 H 0.97002 * 120.00228 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.08160 * 179.68401 * 21 12 11 37 37 H 1.07995 * 119.91616 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.6558 -2.1203 1.1911 6 6 2.0310 -2.9005 2.2224 7 8 2.6616 -2.4252 3.1458 8 7 1.7069 -4.2087 2.2303 9 6 2.0162 -4.9959 3.3366 10 6 3.1907 -4.7588 4.0504 11 6 3.5032 -5.5292 5.1315 12 6 2.6305 -6.5595 5.5333 13 6 2.9445 -7.3580 6.6541 14 1 2.6776 -8.4045 6.6634 15 6 3.6013 -6.7939 7.7530 16 7 4.0023 -5.5490 7.7072 17 14 3.9057 -7.8175 9.2856 18 1 5.2171 -8.5045 9.1696 19 1 3.9142 -6.9327 10.4782 20 1 2.8278 -8.8291 9.4275 21 6 1.4463 -6.7931 4.8071 22 6 1.1499 -6.0177 3.7250 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6054 -0.2617 2.1369 31 1 3.1263 -0.6443 1.2952 32 1 1.2582 -4.6019 1.4655 33 1 3.8569 -3.9662 3.7433 34 1 4.4151 -5.3473 5.6805 35 1 4.4574 -5.1577 8.4692 36 1 0.7750 -7.5845 5.1062 37 1 0.2426 -6.1959 3.1670 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048521452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:55 Heat of formation + Delta-G solvation = -91.770724 kcal Electronic energy + Delta-G solvation = -19070.731554 eV Core-core repulsion = 16004.671354 eV Total energy + Delta-G solvation = -3066.060200 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.77358 -39.73754 -38.07661 -36.27055 -35.98417 -34.72766 -31.46138 -30.88069 -28.05124 -27.97345 -26.59964 -23.60862 -23.07961 -21.79736 -21.25958 -19.80248 -19.22591 -18.24371 -17.72115 -17.38080 -16.76618 -15.95912 -15.76979 -15.40466 -14.97429 -14.56098 -14.42141 -14.03902 -13.96443 -13.60293 -13.44557 -13.35564 -12.97881 -12.86353 -12.68766 -12.35048 -12.16045 -12.08579 -11.90849 -11.75883 -11.69675 -11.52013 -11.46738 -10.99125 -10.66339 -9.47663 -8.81206 -8.50187 -6.33965 0.74895 1.12248 1.18118 1.40353 1.46500 1.55237 1.84347 2.24379 2.80699 3.25195 3.67607 3.78422 3.84357 4.14250 4.34055 4.42725 4.45173 4.48828 4.63119 4.79036 4.90143 4.97869 4.98576 5.08465 5.12028 5.17001 5.24969 5.31288 5.37548 5.39722 5.46205 5.69833 5.82773 6.04881 6.12898 6.32382 6.54759 6.69272 6.95433 7.00498 7.39413 8.42786 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.042692 B = 0.003641 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.697631 B = 7688.523970 C = 8142.302076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.143 4.143 4 C 0.082 3.918 5 O -0.362 6.362 6 C 0.636 3.364 7 O -0.599 6.599 8 N -0.619 5.619 9 C 0.024 3.976 10 C -0.106 4.106 11 C -0.167 4.167 12 C 0.069 3.931 13 C -0.494 4.494 14 H 0.082 0.918 15 C 0.022 3.978 16 N -0.845 5.845 17 Si 0.991 3.009 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.255 1.255 21 C -0.208 4.208 22 C -0.099 4.099 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.423 0.577 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.283 0.717 36 H 0.117 0.883 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.450 7.931 -13.156 16.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 C -0.200 4.200 4 C 0.008 3.992 5 O -0.275 6.275 6 C 0.390 3.610 7 O -0.490 6.490 8 N -0.271 5.271 9 C -0.068 4.068 10 C -0.126 4.126 11 C -0.187 4.187 12 C 0.067 3.933 13 C -0.524 4.524 14 H 0.100 0.900 15 C -0.189 4.189 16 N -0.473 5.473 17 Si 0.812 3.188 18 H -0.187 1.187 19 H -0.198 1.198 20 H -0.179 1.179 21 C -0.228 4.228 22 C -0.119 4.119 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.095 0.905 26 H 0.106 0.894 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.261 0.739 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.093 0.907 36 H 0.135 0.865 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.055 8.454 -12.645 16.029 hybrid contribution 0.324 -0.254 0.719 0.828 sum -4.731 8.200 -11.927 15.227 Atomic orbital electron populations 1.21836 0.93876 1.02091 1.02607 1.21210 0.97351 0.96488 0.95660 1.21781 1.01522 0.93330 1.03393 1.23372 1.00197 0.75081 1.00581 1.86205 1.74171 1.23708 1.43457 1.18338 0.78872 0.82865 0.80943 1.90986 1.44837 1.74702 1.38494 1.41363 1.61468 1.04615 1.19653 1.17134 0.97377 0.98393 0.93888 1.20678 0.96012 0.98838 0.97103 1.21158 1.00970 0.99803 0.96808 1.18090 0.90752 0.92501 0.91981 1.19789 1.34537 0.97736 1.00355 0.89979 1.26862 0.92312 0.96076 1.03672 1.69907 1.30526 1.14501 1.32348 0.85061 0.79663 0.78337 0.75737 1.18693 1.19834 1.17851 1.20969 0.97959 1.04121 0.99702 1.20405 0.97942 0.96139 0.97415 0.93032 0.92878 0.90488 0.89387 0.92080 0.89798 0.92268 0.92075 0.91745 0.73854 0.88417 0.87557 0.90685 0.86454 0.84317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.09 71.98 0.65 -1.71 16 2 C -0.09 -1.52 3.16 -10.80 -0.03 -1.56 16 3 C -0.14 -1.88 9.19 71.98 0.66 -1.22 16 4 C 0.08 2.08 4.85 71.98 0.35 2.43 16 5 O -0.36 -10.89 9.81 -55.60 -0.55 -11.44 16 6 C 0.64 24.31 8.58 129.79 1.11 25.43 16 7 O -0.60 -28.12 13.55 19.84 0.27 -27.85 16 8 N -0.62 -22.21 5.31 -429.07 -2.28 -24.49 16 9 C 0.02 1.08 6.31 38.56 0.24 1.33 16 10 C -0.11 -5.50 8.61 22.13 0.19 -5.31 16 11 C -0.17 -9.39 8.61 22.48 0.19 -9.20 16 12 C 0.07 3.78 5.55 -21.28 -0.12 3.67 16 13 C -0.49 -26.79 9.02 23.39 0.21 -26.58 16 14 H 0.08 4.19 7.85 -2.91 -0.02 4.16 16 15 C 0.02 1.17 5.42 85.24 0.46 1.63 16 16 N -0.85 -46.83 10.61 21.82 0.23 -46.59 16 17 Si 0.99 39.44 29.56 68.60 2.03 41.46 16 18 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 19 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 20 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 21 C -0.21 -9.80 9.74 22.48 0.22 -9.58 16 22 C -0.10 -4.11 9.90 22.13 0.22 -3.89 16 23 H 0.05 0.95 7.82 -2.39 -0.02 0.93 16 24 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.42 11.47 8.93 -92.71 -0.83 10.64 16 33 H 0.10 5.19 6.22 -2.91 -0.02 5.17 16 34 H 0.11 6.39 6.15 -2.91 -0.02 6.37 16 35 H 0.28 14.36 8.30 -92.71 -0.77 13.59 16 36 H 0.12 5.01 8.06 -2.91 -0.02 4.98 16 37 H 0.14 4.49 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -66.83 314.71 4.31 -62.51 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: 0.24 Total: 30.96 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 4.36 Total: -24.57 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -2.05 Total: -71.08 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -0.28 Total: -39.29 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.46 kcal Total: -66.83 4.31 -62.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048521452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.257 kcal (2) G-P(sol) polarization free energy of solvation -66.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds