Wall clock time and date at job start Sun Mar 29 2020 23:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46768 * 2 1 4 4 H 1.08998 * 109.47346 * 55.00151 * 3 2 1 5 5 C 1.52998 * 109.46935 * 175.00402 * 3 2 1 6 6 O 1.42912 * 109.46926 * 294.99966 * 3 2 1 7 7 C 1.35894 * 116.99436 * 155.01420 * 6 3 2 8 8 C 1.38870 * 120.00814 * 185.17330 * 7 6 3 9 9 C 1.38221 * 120.10585 * 179.72541 * 8 7 6 10 10 C 1.38114 * 120.13845 * 0.23649 * 9 8 7 11 11 C 1.39059 * 120.02452 * 0.02562 * 10 9 8 12 12 N 1.39516 * 120.05204 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99682 * 145.22143 * 12 11 10 14 14 O 1.21745 * 119.99992 * 354.62594 * 13 12 11 15 15 C 1.46162 * 119.99819 * 174.63367 * 13 12 11 16 16 H 1.08000 * 120.00190 * 5.05856 * 15 13 12 17 17 C 1.40125 * 119.99788 * 185.06034 * 15 13 12 18 18 N 1.30636 * 120.00424 * 5.06357 * 17 15 13 19 19 Si 1.86799 * 120.00139 * 185.06179 * 17 15 13 20 20 H 1.48504 * 109.47334 * 94.99838 * 19 17 15 21 21 H 1.48499 * 109.47668 * 215.00379 * 19 17 15 22 22 H 1.48508 * 109.47127 * 334.99900 * 19 17 15 23 23 C 1.38531 * 120.01862 * 5.41243 * 7 6 3 24 24 H 1.09005 * 109.46688 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47325 * 299.99634 * 1 2 3 26 26 H 1.08998 * 109.47581 * 59.99876 * 1 2 3 27 27 H 1.09001 * 109.46615 * 240.00181 * 2 1 3 28 28 H 1.08998 * 109.47581 * 120.00124 * 2 1 3 29 29 H 1.08998 * 109.47308 * 59.99726 * 5 3 2 30 30 H 1.09003 * 109.47246 * 179.97438 * 5 3 2 31 31 H 1.09000 * 109.47115 * 299.99696 * 5 3 2 32 32 H 1.07995 * 119.94536 * 0.02562 * 8 7 6 33 33 H 1.07998 * 119.92947 * 180.25350 * 9 8 7 34 34 H 1.08001 * 119.98547 * 179.97438 * 10 9 8 35 35 H 0.96996 * 120.00292 * 325.22426 * 12 11 10 36 36 H 0.96996 * 120.00838 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.06232 * 0.03495 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5647 1.4444 0.1256 6 8 1.6618 2.0814 -1.2212 7 6 1.5522 3.4358 -1.2005 8 6 1.0853 4.1119 -2.3201 9 6 0.9676 5.4889 -2.2993 10 6 1.3184 6.1979 -1.1672 11 6 1.7918 5.5270 -0.0449 12 7 2.1468 6.2427 1.0989 13 6 1.9314 5.7128 2.3193 14 8 1.3392 4.6546 2.4275 15 6 2.4088 6.4086 3.5127 16 1 2.8611 7.3852 3.4238 17 6 2.2796 5.8084 4.7723 18 7 1.8241 4.5880 4.8708 19 14 2.7588 6.7533 6.3108 20 1 1.5542 7.4015 6.8890 21 1 3.3427 5.8174 7.3049 22 1 3.7606 7.7925 5.9615 23 6 1.9108 4.1429 -0.0645 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.9993 0.9054 -0.7162 30 1 3.9281 2.4721 0.1252 31 1 3.8532 0.9571 1.0570 32 1 0.8091 3.5605 -3.2066 33 1 0.6003 6.0115 -3.1702 34 1 1.2259 7.2739 -1.1539 35 1 2.5486 7.1216 1.0158 36 1 1.7350 4.1723 5.7426 37 1 2.2783 3.6188 0.8054 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051781320.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:34 Heat of formation + Delta-G solvation = -66.683936 kcal Electronic energy + Delta-G solvation = -19937.974457 eV Core-core repulsion = 16873.002102 eV Total energy + Delta-G solvation = -3064.972355 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.88765 -38.22485 -36.54897 -34.00934 -33.14732 -32.41318 -29.91374 -29.43118 -28.58941 -26.23870 -23.78304 -22.70238 -21.79241 -20.40172 -19.77719 -17.89925 -17.21768 -15.76970 -15.57819 -15.26026 -14.95554 -14.84447 -14.16988 -13.84833 -13.67510 -13.11041 -13.05449 -12.72921 -12.57418 -12.44855 -11.88489 -11.60459 -11.47377 -11.31027 -11.17431 -11.08101 -10.91730 -10.79581 -10.65435 -10.36872 -10.28534 -10.14885 -9.21275 -8.90712 -7.93931 -7.61668 -7.08546 -6.40374 -4.84907 2.03422 2.06747 3.04393 3.12042 3.15175 3.65606 3.96372 4.25117 4.54586 4.62044 4.94322 5.16580 5.31915 5.45347 5.54625 5.61962 5.67999 5.74827 5.78600 5.81358 5.91053 6.04750 6.09934 6.14350 6.23885 6.34733 6.36799 6.42718 6.49057 6.88109 6.97812 7.10778 7.24418 7.29520 7.72092 7.88139 8.06298 8.19309 8.81812 9.19445 10.34916 10.52601 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018220 B = 0.006293 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.367611 B = 4448.266741 C = 5564.012100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C 0.076 3.924 4 H 0.088 0.912 5 C -0.175 4.175 6 O -0.314 6.314 7 C 0.146 3.854 8 C -0.200 4.200 9 C -0.065 4.065 10 C -0.213 4.213 11 C 0.226 3.774 12 N -0.701 5.701 13 C 0.544 3.456 14 O -0.561 6.561 15 C -0.539 4.539 16 H 0.072 0.928 17 C 0.088 3.912 18 N -0.760 5.760 19 Si 0.912 3.088 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.218 4.218 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.394 0.606 36 H 0.272 0.728 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.255 -3.247 -8.768 9.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C 0.020 3.980 4 H 0.106 0.894 5 C -0.233 4.233 6 O -0.228 6.228 7 C 0.100 3.900 8 C -0.220 4.220 9 C -0.084 4.084 10 C -0.235 4.235 11 C 0.127 3.873 12 N -0.344 5.344 13 C 0.351 3.649 14 O -0.443 6.443 15 C -0.575 4.575 16 H 0.090 0.910 17 C -0.133 4.133 18 N -0.388 5.388 19 Si 0.736 3.264 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.240 4.240 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.227 0.773 36 H 0.083 0.917 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.783 -4.301 -8.588 9.636 hybrid contribution 0.474 1.063 0.980 1.521 sum 1.257 -3.238 -7.608 8.363 Atomic orbital electron populations 1.21752 0.95305 1.01242 1.02746 1.21581 0.96788 0.94271 1.02508 1.22525 0.94983 0.93674 0.86863 0.89397 1.22317 0.95561 1.03195 1.02184 1.86002 1.83982 1.17088 1.35713 1.18833 0.94968 0.82213 0.93977 1.20124 1.10106 0.93916 0.97830 1.20524 0.97854 0.92882 0.97151 1.20803 1.08248 0.99629 0.94812 1.17693 0.91538 0.91128 0.86936 1.44180 1.64447 1.20926 1.04842 1.18378 0.79802 0.85620 0.81107 1.90625 1.44278 1.24172 1.85196 1.20861 1.41812 1.04796 0.90079 0.90973 1.25722 0.92979 0.94428 1.00174 1.69956 1.31914 1.11696 1.25273 0.86280 0.79371 0.79961 0.80768 1.19609 1.20283 1.18733 1.21421 1.09255 0.94432 0.98900 0.92920 0.92376 0.92130 0.91384 0.90318 0.92161 0.91695 0.91202 0.86412 0.86202 0.86578 0.77274 0.91736 0.83523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.81 37.16 0.36 -1.73 16 2 C -0.11 -1.56 5.64 -26.73 -0.15 -1.71 16 3 C 0.08 1.28 2.22 -26.73 -0.06 1.22 16 4 H 0.09 1.78 6.31 -51.93 -0.33 1.46 16 5 C -0.18 -2.72 9.17 37.16 0.34 -2.38 16 6 O -0.31 -5.69 9.33 -19.41 -0.18 -5.87 16 7 C 0.15 2.84 6.60 -39.24 -0.26 2.58 16 8 C -0.20 -3.43 9.99 -39.35 -0.39 -3.82 16 9 C -0.07 -1.05 10.03 -39.63 -0.40 -1.44 16 10 C -0.21 -3.82 9.97 -39.32 -0.39 -4.21 16 11 C 0.23 4.86 6.24 -83.80 -0.52 4.33 16 12 N -0.70 -15.85 5.32 -11.22 -0.06 -15.91 16 13 C 0.54 14.96 7.44 -13.08 -0.10 14.86 16 14 O -0.56 -17.19 12.85 5.15 0.07 -17.12 16 15 C -0.54 -14.57 9.53 -35.70 -0.34 -14.91 16 16 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 17 C 0.09 2.34 5.49 -17.35 -0.10 2.25 16 18 N -0.76 -21.63 11.87 55.55 0.66 -20.97 16 19 Si 0.91 19.29 29.56 -169.99 -5.03 14.27 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 23 C -0.22 -4.79 6.84 -39.21 -0.27 -5.06 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.87 7.82 -51.93 -0.41 0.46 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 1.12 6.92 -51.93 -0.36 0.76 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 34 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.39 7.60 8.80 -40.82 -0.36 7.24 16 36 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 37 H 0.15 3.57 3.89 -52.49 -0.20 3.37 16 LS Contribution 312.14 15.07 4.70 4.70 Total: -1.00 -31.71 312.14 -7.11 -38.82 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -5.01 Total: 12.10 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -2.27 Total: -10.02 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.60 Total: -36.88 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.11 Total: -22.99 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.71 -7.11 -38.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051781320.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.859 kcal (2) G-P(sol) polarization free energy of solvation -31.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds