Wall clock time and date at job start Sun Mar 29 2020 23:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46768 * 2 1 4 4 H 1.08998 * 109.47346 * 55.00151 * 3 2 1 5 5 C 1.52998 * 109.46935 * 175.00402 * 3 2 1 6 6 O 1.42912 * 109.46926 * 294.99966 * 3 2 1 7 7 C 1.35894 * 116.99436 * 155.01420 * 6 3 2 8 8 C 1.38870 * 120.00814 * 185.17330 * 7 6 3 9 9 C 1.38221 * 120.10585 * 179.72541 * 8 7 6 10 10 C 1.38114 * 120.13845 * 0.23649 * 9 8 7 11 11 C 1.39059 * 120.02452 * 0.02562 * 10 9 8 12 12 N 1.39516 * 120.05204 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99682 * 145.22143 * 12 11 10 14 14 O 1.21745 * 119.99992 * 354.62594 * 13 12 11 15 15 C 1.46162 * 119.99819 * 174.63367 * 13 12 11 16 16 H 1.08000 * 120.00190 * 5.05856 * 15 13 12 17 17 C 1.40125 * 119.99788 * 185.06034 * 15 13 12 18 18 N 1.30636 * 120.00424 * 5.06357 * 17 15 13 19 19 Si 1.86799 * 120.00139 * 185.06179 * 17 15 13 20 20 H 1.48504 * 109.47334 * 94.99838 * 19 17 15 21 21 H 1.48499 * 109.47668 * 215.00379 * 19 17 15 22 22 H 1.48508 * 109.47127 * 334.99900 * 19 17 15 23 23 C 1.38531 * 120.01862 * 5.41243 * 7 6 3 24 24 H 1.09005 * 109.46688 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47325 * 299.99634 * 1 2 3 26 26 H 1.08998 * 109.47581 * 59.99876 * 1 2 3 27 27 H 1.09001 * 109.46615 * 240.00181 * 2 1 3 28 28 H 1.08998 * 109.47581 * 120.00124 * 2 1 3 29 29 H 1.08998 * 109.47308 * 59.99726 * 5 3 2 30 30 H 1.09003 * 109.47246 * 179.97438 * 5 3 2 31 31 H 1.09000 * 109.47115 * 299.99696 * 5 3 2 32 32 H 1.07995 * 119.94536 * 0.02562 * 8 7 6 33 33 H 1.07998 * 119.92947 * 180.25350 * 9 8 7 34 34 H 1.08001 * 119.98547 * 179.97438 * 10 9 8 35 35 H 0.96996 * 120.00292 * 325.22426 * 12 11 10 36 36 H 0.96996 * 120.00838 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.06232 * 0.03495 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5647 1.4444 0.1256 6 8 1.6618 2.0814 -1.2212 7 6 1.5522 3.4358 -1.2005 8 6 1.0853 4.1119 -2.3201 9 6 0.9676 5.4889 -2.2993 10 6 1.3184 6.1979 -1.1672 11 6 1.7918 5.5270 -0.0449 12 7 2.1468 6.2427 1.0989 13 6 1.9314 5.7128 2.3193 14 8 1.3392 4.6546 2.4275 15 6 2.4088 6.4086 3.5127 16 1 2.8611 7.3852 3.4238 17 6 2.2796 5.8084 4.7723 18 7 1.8241 4.5880 4.8708 19 14 2.7588 6.7533 6.3108 20 1 1.5542 7.4015 6.8890 21 1 3.3427 5.8174 7.3049 22 1 3.7606 7.7925 5.9615 23 6 1.9108 4.1429 -0.0645 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.9993 0.9054 -0.7162 30 1 3.9281 2.4721 0.1252 31 1 3.8532 0.9571 1.0570 32 1 0.8091 3.5605 -3.2066 33 1 0.6003 6.0115 -3.1702 34 1 1.2259 7.2739 -1.1539 35 1 2.5486 7.1216 1.0158 36 1 1.7350 4.1723 5.7426 37 1 2.2783 3.6188 0.8054 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051781320.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:33 Heat of formation + Delta-G solvation = -87.237433 kcal Electronic energy + Delta-G solvation = -19938.865724 eV Core-core repulsion = 16873.002102 eV Total energy + Delta-G solvation = -3065.863622 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.39220 -39.93166 -38.21852 -35.53061 -34.83016 -34.37971 -31.29981 -30.85218 -30.18956 -28.20125 -25.08508 -24.20177 -23.31410 -21.97393 -21.37514 -19.61031 -18.97833 -17.62864 -17.08085 -16.91580 -16.46996 -16.25885 -15.88666 -15.27460 -15.08779 -14.63154 -14.52618 -14.32327 -14.24599 -13.85268 -13.35657 -13.26720 -12.88642 -12.85637 -12.73980 -12.65470 -12.51973 -12.20374 -12.05801 -12.04209 -11.63585 -11.54495 -11.03470 -10.73439 -9.96203 -9.24846 -8.72503 -8.40665 -6.96376 0.52716 0.58634 1.37843 1.38764 1.54810 2.18740 2.27389 2.36268 2.87890 2.97719 3.55534 3.69579 3.90629 4.06137 4.13926 4.20566 4.35448 4.41674 4.47689 4.57727 4.59296 4.73528 4.83035 4.85528 4.95615 4.98687 5.09640 5.15468 5.23210 5.31935 5.41454 5.55333 5.56528 5.79039 5.84887 6.15207 6.25561 6.56612 6.75764 7.31900 8.32901 8.53930 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018220 B = 0.006293 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.367611 B = 4448.266741 C = 5564.012100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C 0.075 3.925 4 H 0.040 0.960 5 C -0.169 4.169 6 O -0.312 6.312 7 C 0.132 3.868 8 C -0.193 4.193 9 C -0.051 4.051 10 C -0.207 4.207 11 C 0.188 3.812 12 N -0.694 5.694 13 C 0.530 3.470 14 O -0.606 6.606 15 C -0.567 4.567 16 H 0.092 0.908 17 C 0.032 3.968 18 N -0.812 5.812 19 Si 1.000 3.000 20 H -0.264 1.264 21 H -0.271 1.271 22 H -0.247 1.247 23 C -0.242 4.242 24 H 0.081 0.919 25 H 0.033 0.967 26 H 0.051 0.949 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.149 0.851 33 H 0.171 0.829 34 H 0.144 0.856 35 H 0.408 0.592 36 H 0.278 0.722 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.396 -2.435 -10.310 10.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C 0.019 3.981 4 H 0.059 0.941 5 C -0.226 4.226 6 O -0.226 6.226 7 C 0.086 3.914 8 C -0.212 4.212 9 C -0.069 4.069 10 C -0.228 4.228 11 C 0.091 3.909 12 N -0.339 5.339 13 C 0.337 3.663 14 O -0.491 6.491 15 C -0.603 4.603 16 H 0.110 0.890 17 C -0.185 4.185 18 N -0.441 5.441 19 Si 0.819 3.181 20 H -0.189 1.189 21 H -0.196 1.196 22 H -0.170 1.170 23 C -0.264 4.264 24 H 0.100 0.900 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.166 0.834 33 H 0.188 0.812 34 H 0.161 0.839 35 H 0.243 0.757 36 H 0.088 0.912 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.939 -3.463 -10.189 10.802 hybrid contribution 0.402 0.778 1.310 1.576 sum 1.341 -2.685 -8.879 9.372 Atomic orbital electron populations 1.21737 0.95387 1.02605 1.01104 1.21620 0.96702 0.91973 1.04287 1.22583 0.95650 0.94906 0.84983 0.94145 1.22261 0.94709 1.01918 1.03699 1.85983 1.84055 1.16591 1.35982 1.19111 0.95461 0.82713 0.94137 1.20614 1.08193 0.94785 0.97635 1.21086 0.95621 0.92437 0.97795 1.21135 1.06700 1.01081 0.93845 1.18057 0.93885 0.91210 0.87794 1.43745 1.64527 1.21417 1.04210 1.18744 0.79493 0.85247 0.82849 1.90589 1.46224 1.25970 1.86337 1.21394 1.42358 1.05759 0.90743 0.88998 1.26972 0.92186 0.95242 1.04069 1.70118 1.33382 1.13964 1.26620 0.84968 0.79393 0.78442 0.75310 1.18863 1.19556 1.16997 1.21282 1.11096 0.95127 0.98916 0.89982 0.94810 0.92976 0.89051 0.88889 0.89601 0.94437 0.90393 0.83361 0.81201 0.83872 0.75662 0.91234 0.87250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 9.81 71.98 0.71 -3.43 16 2 C -0.11 -2.94 5.64 30.59 0.17 -2.76 16 3 C 0.07 2.66 2.22 30.59 0.07 2.73 16 4 H 0.04 1.83 6.31 -2.39 -0.02 1.81 16 5 C -0.17 -5.46 9.17 71.98 0.66 -4.80 16 6 O -0.31 -11.48 9.33 -92.36 -0.86 -12.34 16 7 C 0.13 5.20 6.60 22.49 0.15 5.35 16 8 C -0.19 -6.15 9.99 22.42 0.22 -5.93 16 9 C -0.05 -1.46 10.03 22.24 0.22 -1.23 16 10 C -0.21 -7.01 9.97 22.44 0.22 -6.79 16 11 C 0.19 8.29 6.24 38.28 0.24 8.53 16 12 N -0.69 -32.62 5.32 -307.59 -1.63 -34.26 16 13 C 0.53 30.69 7.44 86.30 0.64 31.33 16 14 O -0.61 -39.86 12.85 -4.49 -0.06 -39.92 16 15 C -0.57 -31.50 9.53 24.79 0.24 -31.27 16 16 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 17 C 0.03 1.73 5.49 85.33 0.47 2.20 16 18 N -0.81 -48.36 11.87 21.85 0.26 -48.10 16 19 Si 1.00 39.86 29.56 68.60 2.03 41.88 16 20 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 21 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 22 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 23 C -0.24 -11.27 6.84 22.51 0.15 -11.11 16 24 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 25 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.05 1.49 7.82 -2.39 -0.02 1.47 16 27 H 0.09 2.07 8.14 -2.39 -0.02 2.06 16 28 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.04 1.39 6.92 -2.39 -0.02 1.37 16 31 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 33 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 34 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 35 H 0.41 16.06 8.80 -92.71 -0.82 15.24 16 36 H 0.28 14.94 8.29 -92.71 -0.77 14.17 16 37 H 0.11 5.90 3.89 -2.91 -0.01 5.89 16 Total: -1.00 -74.51 312.14 4.16 -70.34 By element: Atomic # 1 Polarization: 39.32 SS G_CDS: 0.27 Total: 39.58 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: 4.17 Total: -17.19 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -1.38 Total: -82.36 kcal Atomic # 8 Polarization: -51.34 SS G_CDS: -0.92 Total: -52.26 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.88 kcal Total: -74.51 4.16 -70.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051781320.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.894 kcal (2) G-P(sol) polarization free energy of solvation -74.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds