Wall clock time and date at job start Sun Mar 29 2020 23:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46797 * 2 1 4 4 H 1.09007 * 109.46904 * 304.99574 * 3 2 1 5 5 C 1.53001 * 109.46868 * 185.00252 * 3 2 1 6 6 O 1.42894 * 109.47493 * 64.99992 * 3 2 1 7 7 C 1.35898 * 116.99909 * 204.60667 * 6 3 2 8 8 C 1.38864 * 120.01494 * 354.48517 * 7 6 3 9 9 C 1.38220 * 120.10762 * 179.72168 * 8 7 6 10 10 C 1.38113 * 120.13792 * 0.25824 * 9 8 7 11 11 C 1.39064 * 120.02490 * 0.03849 * 10 9 8 12 12 N 1.39515 * 120.05001 * 180.02562 * 11 10 9 13 13 C 1.34785 * 119.99651 * 213.21692 * 12 11 10 14 14 O 1.21738 * 119.99987 * 5.23999 * 13 12 11 15 15 C 1.46165 * 119.99739 * 185.23813 * 13 12 11 16 16 H 1.08005 * 119.99793 * 0.02562 * 15 13 12 17 17 C 1.40125 * 119.99866 * 180.02562 * 15 13 12 18 18 N 1.30631 * 119.99512 * 0.02562 * 17 15 13 19 19 Si 1.86792 * 119.99851 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46948 * 60.00647 * 19 17 15 21 21 H 1.48500 * 109.46927 * 180.02562 * 19 17 15 22 22 H 1.48491 * 109.47692 * 300.00370 * 19 17 15 23 23 C 1.38531 * 120.01040 * 174.78048 * 7 6 3 24 24 H 1.09000 * 109.47122 * 300.00030 * 1 2 3 25 25 H 1.09003 * 109.47263 * 60.00180 * 1 2 3 26 26 H 1.08994 * 109.47470 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47122 * 239.99970 * 2 1 3 28 28 H 1.08992 * 109.46828 * 119.99600 * 2 1 3 29 29 H 1.09002 * 109.47020 * 299.99813 * 5 3 2 30 30 H 1.08998 * 109.47208 * 59.99534 * 5 3 2 31 31 H 1.08997 * 109.47397 * 180.02562 * 5 3 2 32 32 H 1.08001 * 119.94687 * 0.02562 * 8 7 6 33 33 H 1.07999 * 119.93089 * 180.27859 * 9 8 7 34 34 H 1.08003 * 119.98712 * 180.02562 * 10 9 8 35 35 H 0.96996 * 120.00692 * 33.22657 * 12 11 10 36 36 H 0.97005 * 119.99398 * 179.97438 * 18 17 15 37 37 H 1.08003 * 120.07372 * 359.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1258 6 8 1.6619 2.0815 1.2210 7 6 1.5600 3.4365 1.2024 8 6 1.9289 4.1453 0.0667 9 6 1.8206 5.5231 0.0436 10 6 1.3504 6.2003 1.1517 11 6 0.9852 5.4966 2.2942 12 7 0.5096 6.1801 3.4135 13 6 0.7735 5.7138 4.6503 14 8 1.5055 4.7519 4.7948 15 6 0.1809 6.3632 5.8180 16 1 -0.4688 7.2164 5.6897 17 6 0.4557 5.8788 7.1038 18 7 1.2420 4.8471 7.2588 19 14 -0.3011 6.7091 8.5962 20 1 -1.7816 6.6482 8.4988 21 1 0.1434 6.0113 9.8293 22 1 0.1337 8.1280 8.6469 23 6 1.0939 4.1116 2.3186 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 3.9994 0.9054 0.7160 30 1 3.8531 0.9570 -1.0571 31 1 3.9281 2.4720 -0.1253 32 1 2.2963 3.6188 -0.8018 33 1 2.1041 6.0711 -0.8427 34 1 1.2664 7.2769 1.1309 35 1 -0.0111 6.9908 3.3018 36 1 1.4325 4.5120 8.1490 37 1 0.8107 3.5623 3.2043 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051781322.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:35 Heat of formation + Delta-G solvation = -63.941394 kcal Electronic energy + Delta-G solvation = -19500.072964 eV Core-core repulsion = 16435.219535 eV Total energy + Delta-G solvation = -3064.853430 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.92964 -38.38318 -36.46547 -34.10751 -33.18643 -32.36803 -30.26967 -29.29430 -28.65023 -26.19997 -23.94945 -22.64538 -21.98770 -20.76358 -19.46873 -17.99855 -17.29377 -15.83902 -15.45787 -15.44224 -14.98841 -14.94635 -14.19185 -13.92646 -13.63917 -13.30213 -13.06223 -12.89525 -12.55718 -12.44013 -12.09921 -11.77912 -11.56327 -11.32588 -11.19820 -11.06561 -11.01583 -10.89749 -10.62383 -10.47639 -10.35617 -10.29619 -9.24294 -8.85946 -7.88621 -7.57773 -7.08834 -6.32340 -4.80397 2.01748 2.06425 3.10359 3.15267 3.17237 3.51605 4.01081 4.26535 4.57465 4.66504 4.72784 4.92025 5.03401 5.25481 5.33397 5.46687 5.55395 5.56117 5.65535 5.67494 5.79056 5.86020 5.91014 5.97332 6.13031 6.18349 6.21167 6.29601 6.57870 6.89123 6.94991 7.12577 7.17504 7.30404 7.75912 7.93988 8.09388 8.19885 8.86575 9.23539 10.40936 10.59012 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025213 B = 0.004667 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.274177 B = 5997.747151 C = 6644.254403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C 0.081 3.919 4 H 0.071 0.929 5 C -0.181 4.181 6 O -0.306 6.306 7 C 0.148 3.852 8 C -0.256 4.256 9 C -0.065 4.065 10 C -0.212 4.212 11 C 0.229 3.771 12 N -0.698 5.698 13 C 0.541 3.459 14 O -0.555 6.555 15 C -0.539 4.539 16 H 0.072 0.928 17 C 0.086 3.914 18 N -0.759 5.759 19 Si 0.913 3.087 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.267 1.267 23 C -0.164 4.164 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.395 0.605 36 H 0.273 0.727 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.353 -3.795 -14.014 14.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C 0.025 3.975 4 H 0.089 0.911 5 C -0.238 4.238 6 O -0.220 6.220 7 C 0.102 3.898 8 C -0.276 4.276 9 C -0.083 4.083 10 C -0.234 4.234 11 C 0.129 3.871 12 N -0.341 5.341 13 C 0.347 3.653 14 O -0.436 6.436 15 C -0.575 4.575 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.387 5.387 19 Si 0.737 3.263 20 H -0.191 1.191 21 H -0.204 1.204 22 H -0.191 1.191 23 C -0.186 4.186 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.228 0.772 36 H 0.083 0.917 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.208 -4.751 -13.482 14.296 hybrid contribution -0.425 0.961 0.444 1.141 sum -0.218 -3.790 -13.038 13.579 Atomic orbital electron populations 1.21758 0.95212 1.01573 1.02576 1.21615 0.96835 0.94296 1.02836 1.22395 0.94763 0.93694 0.86673 0.91124 1.22382 0.95706 1.03285 1.02418 1.86137 1.83898 1.17287 1.34712 1.18766 0.95178 0.81897 0.93941 1.20965 1.12834 0.95190 0.98649 1.20497 0.97296 0.93334 0.97213 1.20782 1.08617 0.99224 0.94778 1.17620 0.91810 0.90480 0.87220 1.44197 1.55999 1.28874 1.05028 1.18413 0.81566 0.84512 0.80768 1.90661 1.39404 1.29144 1.84412 1.20822 1.30668 1.16356 0.89646 0.91015 1.25741 0.93660 0.94038 1.00043 1.69981 1.26368 1.18562 1.23757 0.86337 0.80023 0.79913 0.79994 1.19112 1.20397 1.19144 1.20500 1.06855 0.92902 0.98307 0.91617 0.92979 0.92702 0.90503 0.90801 0.91491 0.91548 0.91580 0.86413 0.86649 0.86529 0.77192 0.91659 0.83758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.81 37.16 0.36 -1.35 16 2 C -0.12 -1.30 5.64 -26.73 -0.15 -1.45 16 3 C 0.08 1.07 2.23 -26.73 -0.06 1.01 16 4 H 0.07 0.86 6.33 -51.93 -0.33 0.53 16 5 C -0.18 -2.12 9.16 37.16 0.34 -1.78 16 6 O -0.31 -5.54 9.33 -19.42 -0.18 -5.72 16 7 C 0.15 2.87 6.59 -39.24 -0.26 2.61 16 8 C -0.26 -4.21 8.23 -39.36 -0.32 -4.53 16 9 C -0.06 -1.02 10.03 -39.63 -0.40 -1.42 16 10 C -0.21 -3.79 9.96 -39.32 -0.39 -4.19 16 11 C 0.23 4.96 6.28 -83.79 -0.53 4.44 16 12 N -0.70 -16.02 5.32 -11.21 -0.06 -16.08 16 13 C 0.54 15.24 7.47 -13.08 -0.10 15.15 16 14 O -0.55 -17.69 12.69 5.15 0.07 -17.62 16 15 C -0.54 -14.83 9.54 -35.69 -0.34 -15.17 16 16 H 0.07 1.78 7.85 -52.48 -0.41 1.37 16 17 C 0.09 2.35 5.50 -17.35 -0.10 2.26 16 18 N -0.76 -22.30 11.82 55.55 0.66 -21.64 16 19 Si 0.91 19.63 29.56 -169.99 -5.02 14.60 16 20 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 21 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 C -0.16 -3.75 8.59 -39.21 -0.34 -4.09 16 24 H 0.06 0.88 7.82 -51.93 -0.41 0.47 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.84 6.86 -51.93 -0.36 0.48 16 32 H 0.12 1.60 5.40 -52.49 -0.28 1.32 16 33 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.12 1.81 8.06 -52.48 -0.42 1.38 16 35 H 0.39 7.66 8.79 -40.82 -0.36 7.30 16 36 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 37 H 0.14 3.83 6.40 -52.48 -0.34 3.49 16 LS Contribution 311.80 15.07 4.70 4.70 Total: -1.00 -33.23 311.80 -7.12 -40.35 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -5.00 Total: 9.93 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -2.27 Total: -8.53 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.60 Total: -37.72 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.12 Total: -23.34 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.23 -7.12 -40.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051781322.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.592 kcal (2) G-P(sol) polarization free energy of solvation -33.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds