Wall clock time and date at job start Sun Mar 29 2020 23:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46902 * 2 1 4 4 H 1.09001 * 109.47380 * 305.00002 * 3 2 1 5 5 C 1.50704 * 109.46663 * 184.99910 * 3 2 1 6 6 H 1.08001 * 119.99872 * 239.99868 * 5 3 2 7 7 C 1.37872 * 120.00096 * 60.00435 * 5 3 2 8 8 N 1.31514 * 119.99970 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00189 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46847 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46852 * 119.99940 * 9 7 5 12 12 H 1.48498 * 109.47484 * 240.00148 * 9 7 5 13 13 N 1.46497 * 109.47020 * 65.00298 * 3 2 1 14 14 C 1.34779 * 120.00169 * 274.99805 * 13 3 2 15 15 O 1.21595 * 119.99564 * 359.97438 * 14 13 3 16 16 C 1.47527 * 120.00212 * 179.97438 * 14 13 3 17 17 C 1.39712 * 120.19556 * 0.02562 * 16 14 13 18 18 C 1.37785 * 119.91095 * 179.97438 * 17 16 14 19 19 C 1.38543 * 120.29933 * 359.97438 * 18 17 16 20 20 C 1.38054 * 120.39305 * 0.02562 * 19 18 17 21 21 C 1.50697 * 119.95898 * 179.97438 * 20 19 18 22 22 C 1.38702 * 120.08532 * 359.97438 * 20 19 18 23 23 O 1.35654 * 120.15510 * 180.02562 * 22 20 19 24 24 H 1.09000 * 109.47115 * 59.99511 * 1 2 3 25 25 H 1.08997 * 109.47104 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47212 * 299.99825 * 1 2 3 27 27 H 1.09006 * 109.47171 * 240.00202 * 2 1 3 28 28 H 1.09000 * 109.47115 * 120.00489 * 2 1 3 29 29 H 0.96998 * 120.00318 * 180.02562 * 8 7 5 30 30 H 0.97003 * 120.00315 * 94.99296 * 13 3 2 31 31 H 1.08000 * 120.04117 * 0.25125 * 17 16 14 32 32 H 1.07998 * 119.84754 * 180.02562 * 18 17 16 33 33 H 1.08003 * 119.80300 * 180.02562 * 19 18 17 34 34 H 1.08996 * 109.47900 * 89.99108 * 21 20 19 35 35 H 1.09004 * 109.47079 * 209.99593 * 21 20 19 36 36 H 1.09004 * 109.46782 * 329.98884 * 21 20 19 37 37 H 0.96694 * 114.00099 * 89.99988 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3376 -2.1733 9 14 6.0049 0.8812 -1.3818 10 1 6.5987 1.5461 -0.1941 11 1 6.4969 -0.5175 -1.4630 12 1 6.3991 1.6167 -2.6101 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3671 15 8 -0.3413 2.6326 0.4318 16 6 0.0446 3.3234 2.6279 17 6 0.9337 3.3627 3.7049 18 6 0.5631 3.9802 4.8795 19 6 -0.6879 4.5635 4.9981 20 6 -1.5762 4.5319 3.9418 21 6 -2.9348 5.1690 4.0816 22 6 -1.2200 3.9146 2.7519 23 8 -2.0915 3.8832 1.7129 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8292 -0.0608 -2.9500 30 1 2.2719 2.1231 1.9978 31 1 1.9118 2.9136 3.6152 32 1 1.2513 4.0104 5.7113 33 1 -0.9699 5.0458 5.9224 34 1 -2.8813 6.2116 3.7685 35 1 -3.6514 4.6377 3.4552 36 1 -3.2544 5.1182 5.1225 37 1 -2.0162 4.6382 1.1134 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054177188.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:53:41 Heat of formation + Delta-G solvation = -64.809405 kcal Electronic energy + Delta-G solvation = -19929.601267 eV Core-core repulsion = 16864.710198 eV Total energy + Delta-G solvation = -3064.891069 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.18340 -38.28352 -36.51437 -34.93300 -33.01464 -32.15464 -30.91562 -29.80340 -27.11825 -26.64812 -23.86031 -22.69417 -21.67460 -20.20909 -19.24374 -18.18931 -17.34254 -16.11164 -15.86923 -15.40029 -15.03488 -14.57499 -14.37620 -14.03523 -13.78682 -13.32808 -12.90549 -12.66857 -12.43617 -12.16170 -12.08571 -11.72793 -11.44697 -11.40788 -11.23560 -10.94837 -10.82774 -10.47587 -10.27964 -10.14048 -9.58986 -9.02438 -8.92118 -8.77835 -8.52244 -8.48618 -7.76564 -6.11636 -4.21079 0.98662 1.26703 3.23681 3.27760 3.31686 3.34156 4.06013 4.09766 4.35450 4.41877 4.74848 4.85118 5.10835 5.19545 5.25944 5.35697 5.50265 5.62523 5.72758 5.84558 6.06086 6.27554 6.40048 6.44175 6.44842 6.52337 6.71814 6.77976 7.09940 7.24713 7.40874 7.48444 7.64182 7.76031 7.88175 7.92365 8.19941 8.69163 8.79569 9.16674 9.46550 10.93726 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.030175 B = 0.005082 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.707071 B = 5508.726495 C = 6073.397064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.704 5.704 14 C 0.540 3.460 15 O -0.530 6.530 16 C -0.149 4.149 17 C -0.080 4.080 18 C -0.136 4.136 19 C -0.092 4.092 20 C -0.128 4.128 21 C -0.109 4.109 22 C 0.160 3.840 23 O -0.473 6.473 24 H 0.049 0.951 25 H 0.022 0.978 26 H 0.039 0.961 27 H 0.099 0.901 28 H 0.030 0.970 29 H 0.264 0.736 30 H 0.386 0.614 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.781 8.240 13.210 16.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.353 5.353 14 C 0.326 3.674 15 O -0.408 6.408 16 C -0.152 4.152 17 C -0.099 4.099 18 C -0.154 4.154 19 C -0.111 4.111 20 C -0.128 4.128 21 C -0.166 4.166 22 C 0.114 3.886 23 O -0.284 6.284 24 H 0.069 0.931 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.117 0.883 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.219 0.781 31 H 0.149 0.851 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -7.488 7.573 12.550 16.460 hybrid contribution 1.561 0.318 0.088 1.596 sum -5.927 7.891 12.638 16.035 Atomic orbital electron populations 1.21835 0.98221 0.98023 1.01367 1.21938 0.92707 0.99747 1.02217 1.18799 0.94182 0.89210 0.80885 0.93237 1.21267 0.90709 1.38963 1.06287 0.92088 1.24882 0.98579 0.94809 0.95380 1.69907 1.35017 1.37641 1.09326 0.86408 0.84907 0.77771 0.78097 1.19763 1.20876 1.20888 1.46461 1.14391 1.55878 1.18526 1.17956 0.83006 0.79754 0.86716 1.90770 1.51042 1.59383 1.39629 1.20841 0.94621 1.03432 0.96337 1.21331 0.98979 0.97365 0.92234 1.21042 0.96837 0.99642 0.97892 1.21026 0.93404 0.98705 0.97928 1.20201 0.97769 1.00670 0.94198 1.20660 0.93207 1.00170 1.02545 1.18326 0.87317 0.94726 0.88272 1.84713 1.56108 1.49851 1.37703 0.93139 0.95924 0.94173 0.88292 0.95096 0.92620 0.78094 0.85113 0.85488 0.85680 0.91425 0.90738 0.91617 0.75108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.51 37.16 0.32 -2.89 16 2 C -0.13 -3.17 5.45 -26.73 -0.15 -3.31 16 3 C 0.27 6.89 2.24 -69.08 -0.15 6.74 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -14.11 8.73 -34.44 -0.30 -14.41 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.74 11.29 55.43 0.63 -24.11 16 9 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.70 -14.99 4.97 -55.98 -0.28 -15.26 16 14 C 0.54 11.25 6.33 -12.47 -0.08 11.18 16 15 O -0.53 -12.58 12.30 -16.60 -0.20 -12.79 16 16 C -0.15 -2.50 5.89 -104.84 -0.62 -3.12 16 17 C -0.08 -1.10 9.54 -39.20 -0.37 -1.47 16 18 C -0.14 -1.52 10.02 -39.63 -0.40 -1.92 16 19 C -0.09 -0.99 9.68 -39.54 -0.38 -1.38 16 20 C -0.13 -1.57 5.89 -104.52 -0.62 -2.19 16 21 C -0.11 -1.04 9.79 36.00 0.35 -0.68 16 22 C 0.16 2.47 6.69 -38.69 -0.26 2.21 16 23 O -0.47 -7.49 10.62 -40.54 -0.43 -7.92 16 24 H 0.05 1.24 7.84 -51.93 -0.41 0.84 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.04 0.93 5.64 -51.93 -0.29 0.64 16 27 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.39 7.16 6.57 -40.82 -0.27 6.90 16 31 H 0.13 1.62 6.40 -52.49 -0.34 1.29 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.76 7.53 -51.93 -0.39 0.37 16 36 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 37 H 0.39 4.80 9.06 45.56 0.41 5.22 16 LS Contribution 305.34 15.07 4.60 4.60 Total: -1.00 -31.48 305.34 -7.52 -39.00 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -4.06 Total: 10.50 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -2.75 Total: -9.56 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.35 Total: -39.38 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.63 Total: -20.71 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.48 -7.52 -39.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177188.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.811 kcal (2) G-P(sol) polarization free energy of solvation -31.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds