Wall clock time and date at job start Sun Mar 29 2020 23:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31507 * 120.00279 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99507 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47368 * 90.00025 * 9 7 5 11 11 H 1.48505 * 109.46966 * 209.99896 * 9 7 5 12 12 H 1.48497 * 109.47165 * 329.99743 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21592 * 120.00054 * 0.02562 * 14 13 3 16 16 C 1.47540 * 119.99712 * 180.02562 * 14 13 3 17 17 C 1.39701 * 120.19655 * 359.73004 * 16 14 13 18 18 C 1.37786 * 119.91005 * 179.74151 * 17 16 14 19 19 C 1.50707 * 119.84902 * 180.25238 * 18 17 16 20 20 C 1.38546 * 120.30128 * 0.50929 * 18 17 16 21 21 C 1.38060 * 120.38744 * 359.76595 * 20 18 17 22 22 C 1.38705 * 120.08436 * 359.97438 * 21 20 18 23 23 O 1.35651 * 120.14793 * 179.97438 * 22 21 20 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 0.96999 * 119.99739 * 179.97438 * 8 7 5 30 30 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 31 31 H 1.08005 * 120.04537 * 359.96939 * 17 16 14 32 32 H 1.08996 * 109.46707 * 270.25578 * 19 18 17 33 33 H 1.08999 * 109.47373 * 30.25535 * 19 18 17 34 34 H 1.08997 * 109.46848 * 150.25812 * 19 18 17 35 35 H 1.07997 * 119.80432 * 179.74242 * 20 18 17 36 36 H 1.07997 * 119.95328 * 179.97438 * 21 20 18 37 37 H 0.96703 * 114.00065 * 270.01877 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7942 0.2358 3.8755 12 1 1.7882 0.8093 2.6395 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3412 2.6325 -0.4316 16 6 0.0448 3.3236 -2.6277 17 6 0.9357 3.3675 -3.7029 18 6 0.5630 3.9800 -4.8795 19 6 1.5231 4.0215 -6.0404 20 6 -0.6884 4.5625 -4.9984 21 6 -1.5765 4.5313 -3.9418 22 6 -1.2200 3.9143 -2.7518 23 8 -2.0914 3.8834 -1.7127 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 5.8770 0.4816 2.1128 30 1 2.2720 2.1232 -1.9977 31 1 1.9140 2.9187 -3.6132 32 1 2.1354 4.9207 -5.9734 33 1 2.1656 3.1415 -6.0123 34 1 0.9626 4.0325 -6.9751 35 1 -0.9707 5.0441 -5.9229 36 1 -2.5500 4.9880 -4.0421 37 1 -2.0161 4.6388 -1.1136 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054177427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:53:46 Heat of formation + Delta-G solvation = -57.559761 kcal Electronic energy + Delta-G solvation = -19985.809923 eV Core-core repulsion = 16921.233222 eV Total energy + Delta-G solvation = -3064.576701 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.24584 -38.41985 -36.89267 -35.19267 -32.59506 -31.98086 -31.73351 -30.53336 -27.45351 -26.36716 -23.98322 -22.69037 -21.87553 -20.43959 -19.56404 -18.39406 -17.37565 -16.18671 -16.08824 -15.45502 -15.32086 -14.59191 -14.47763 -14.14352 -13.90518 -13.58316 -13.25778 -12.91587 -12.69033 -12.36956 -12.00753 -11.86984 -11.78586 -11.64194 -11.51011 -11.05965 -10.87761 -10.63335 -10.54081 -9.90926 -9.53209 -9.21874 -9.06022 -9.02492 -8.74793 -8.47090 -8.01706 -6.21098 -4.23517 0.89961 1.20783 3.16796 3.24554 3.36088 3.41802 3.91660 3.96638 4.31768 4.32186 4.72649 4.73125 4.94766 5.12880 5.17480 5.40071 5.49164 5.50586 5.64043 5.83199 5.93406 6.01321 6.06736 6.10801 6.21133 6.33075 6.43881 6.68479 6.71869 6.74562 6.87820 7.01617 7.29320 7.31927 7.52464 7.81117 8.16592 8.53390 8.76058 8.96402 9.40048 10.90923 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025853 B = 0.005761 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.804489 B = 4859.100947 C = 5581.296332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.243 3.757 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.697 5.697 14 C 0.543 3.457 15 O -0.531 6.531 16 C -0.150 4.150 17 C -0.073 4.073 18 C -0.107 4.107 19 C -0.113 4.113 20 C -0.088 4.088 21 C -0.156 4.156 22 C 0.156 3.844 23 O -0.477 6.477 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.031 0.969 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.267 0.733 30 H 0.392 0.608 31 H 0.133 0.867 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.260 6.849 -12.807 17.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.140 3.860 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.529 5.529 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.184 1.184 13 N -0.345 5.345 14 C 0.329 3.671 15 O -0.410 6.410 16 C -0.154 4.154 17 C -0.092 4.092 18 C -0.107 4.107 19 C -0.170 4.170 20 C -0.106 4.106 21 C -0.174 4.174 22 C 0.110 3.890 23 O -0.288 6.288 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.227 0.773 31 H 0.150 0.850 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -10.809 6.232 -12.233 17.474 hybrid contribution 0.080 -0.100 0.595 0.609 sum -10.730 6.132 -11.637 16.975 Atomic orbital electron populations 1.21874 0.96804 0.99026 1.02399 1.22285 0.94457 0.99890 1.01050 1.19157 0.95600 0.88526 0.82729 0.93240 1.21043 0.88584 1.39812 1.07860 0.90240 1.24822 0.94860 0.95104 0.97663 1.69864 1.08688 1.44538 1.29829 0.86903 0.80987 0.80002 0.80855 1.20221 1.22177 1.18424 1.46124 1.14629 1.55827 1.17960 1.17984 0.82736 0.79509 0.86849 1.90766 1.51123 1.59423 1.39662 1.20727 0.94771 1.03822 0.96054 1.21239 0.98916 0.97338 0.91693 1.19844 0.95645 0.99397 0.95783 1.20783 0.98016 1.02863 0.95295 1.21015 0.92977 0.98264 0.98364 1.21383 1.00736 1.01719 0.93599 1.18496 0.87258 0.94650 0.88604 1.84738 1.56195 1.49954 1.37908 0.92829 0.92850 0.95027 0.92785 0.92344 0.92288 0.77340 0.84962 0.91042 0.91187 0.91572 0.85550 0.85090 0.74981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.51 37.16 0.32 -2.71 16 2 C -0.14 -3.14 5.11 -26.74 -0.14 -3.28 16 3 C 0.24 5.83 1.83 -69.09 -0.13 5.70 16 4 H 0.05 1.31 6.63 -51.93 -0.34 0.96 16 5 C -0.54 -14.46 9.31 -34.44 -0.32 -14.78 16 6 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16 7 C 0.08 2.22 5.45 -17.82 -0.10 2.13 16 8 N -0.89 -26.40 13.96 55.43 0.77 -25.62 16 9 Si 0.88 21.87 24.41 -169.99 -4.15 17.72 16 10 H -0.28 -6.63 6.83 56.52 0.39 -6.24 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 13 N -0.70 -14.15 4.97 -55.98 -0.28 -14.43 16 14 C 0.54 10.71 6.33 -12.47 -0.08 10.63 16 15 O -0.53 -11.86 12.30 -16.59 -0.20 -12.06 16 16 C -0.15 -2.41 5.89 -104.84 -0.62 -3.02 16 17 C -0.07 -0.97 9.18 -39.20 -0.36 -1.33 16 18 C -0.11 -1.18 5.87 -104.67 -0.61 -1.79 16 19 C -0.11 -0.93 10.00 36.01 0.36 -0.57 16 20 C -0.09 -0.90 9.68 -39.53 -0.38 -1.28 16 21 C -0.16 -1.80 9.98 -39.47 -0.39 -2.19 16 22 C 0.16 2.29 6.72 -38.69 -0.26 2.03 16 23 O -0.48 -7.23 11.58 -40.53 -0.47 -7.69 16 24 H 0.05 1.14 5.65 -51.93 -0.29 0.84 16 25 H 0.05 1.18 7.84 -51.93 -0.41 0.77 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 1.28 3.22 -51.93 -0.17 1.12 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.39 7.06 6.57 -40.82 -0.27 6.79 16 31 H 0.13 1.62 6.40 -52.48 -0.34 1.29 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 34 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 37 H 0.39 4.47 9.06 45.56 0.41 4.88 16 LS Contribution 299.91 15.07 4.52 4.52 Total: -1.00 -32.51 299.91 -6.48 -38.99 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -3.96 Total: 9.04 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -2.71 Total: -10.47 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.50 Total: -40.05 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.67 Total: -19.76 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.15 Total: 17.72 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.51 -6.48 -38.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.572 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds