Wall clock time and date at job start Sun Mar 29 2020 23:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47216 * 2 1 4 4 H 1.08998 * 109.46888 * 304.99904 * 3 2 1 5 5 C 1.50699 * 109.47075 * 184.99825 * 3 2 1 6 6 H 1.08000 * 119.99989 * 239.99547 * 5 3 2 7 7 C 1.37884 * 119.99891 * 60.00191 * 5 3 2 8 8 N 1.31516 * 120.00071 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00008 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47508 * 89.99411 * 9 7 5 11 11 H 1.48493 * 109.47125 * 210.00050 * 9 7 5 12 12 H 1.48503 * 109.46841 * 329.99712 * 9 7 5 13 13 N 1.46500 * 109.47204 * 64.99750 * 3 2 1 14 14 C 1.34776 * 119.99752 * 275.00147 * 13 3 2 15 15 O 1.21274 * 120.00463 * 0.02562 * 14 13 3 16 16 C 1.50704 * 119.99647 * 179.97438 * 14 13 3 17 17 O 1.42901 * 109.46992 * 179.97438 * 16 14 13 18 18 C 1.35905 * 116.99604 * 179.97438 * 17 16 14 19 19 C 1.38722 * 120.05728 * 359.72917 * 18 17 16 20 20 C 1.38150 * 119.94161 * 179.74227 * 19 18 17 21 21 C 1.38261 * 120.05672 * 0.50783 * 20 19 18 22 22 C 1.38268 * 120.10988 * 359.76619 * 21 20 19 23 23 C 1.38139 * 120.05525 * 359.97438 * 22 21 20 24 24 H 1.08998 * 109.46756 * 60.00148 * 1 2 3 25 25 H 1.09003 * 109.47206 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47341 * 300.00206 * 1 2 3 27 27 H 1.08998 * 109.47341 * 239.99794 * 2 1 3 28 28 H 1.08998 * 109.46756 * 119.99852 * 2 1 3 29 29 H 0.96994 * 119.99977 * 180.02562 * 8 7 5 30 30 H 0.96995 * 119.99981 * 94.99589 * 13 3 2 31 31 H 1.08996 * 109.46943 * 59.99840 * 16 14 13 32 32 H 1.08999 * 109.47285 * 299.99980 * 16 14 13 33 33 H 1.08006 * 120.03385 * 359.97438 * 19 18 17 34 34 H 1.08007 * 119.97088 * 180.27367 * 20 19 18 35 35 H 1.08001 * 119.94795 * 179.74501 * 21 20 19 36 36 H 1.08000 * 119.96731 * 179.97438 * 22 21 20 37 37 H 1.08005 * 120.02930 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4063 0.3365 -2.1729 9 14 6.0050 0.8798 -1.3811 10 1 6.5539 -0.3521 -0.7597 11 1 6.3836 0.9213 -2.8164 12 1 6.5576 2.0718 -0.6889 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3668 15 8 -0.3396 2.6319 0.4343 16 6 0.0362 3.3377 2.6547 17 8 -1.2889 3.8579 2.5297 18 6 -1.8041 4.5000 3.6110 19 6 -1.0520 4.6218 4.7703 20 6 -1.5761 5.2797 5.8662 21 6 -2.8530 5.8072 5.8119 22 6 -3.6067 5.6821 4.6595 23 6 -3.0852 5.0299 3.5591 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8293 -0.0619 -2.9495 30 1 2.2719 2.1231 1.9977 31 1 0.7276 4.1529 2.8678 32 1 0.0672 2.6130 3.4683 33 1 -0.0562 4.2061 4.8148 34 1 -0.9893 5.3787 6.7676 35 1 -3.2625 6.3175 6.6711 36 1 -4.6040 6.0947 4.6197 37 1 -3.6745 4.9320 2.6593 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054177881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:55 Heat of formation + Delta-G solvation = -73.417287 kcal Electronic energy + Delta-G solvation = -19261.809761 eV Core-core repulsion = 16196.545426 eV Total energy + Delta-G solvation = -3065.264335 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.36936 -40.35650 -38.24238 -36.86805 -34.35604 -33.00673 -31.98191 -31.06185 -29.66569 -28.24209 -25.02415 -23.68214 -23.13755 -22.00705 -21.18562 -19.36583 -18.99066 -17.51037 -17.45103 -17.22504 -16.83713 -16.50887 -15.95643 -15.71754 -15.22014 -14.82507 -14.59345 -14.29898 -14.05186 -13.67290 -13.55054 -13.28989 -13.17634 -12.91256 -12.66704 -12.45204 -12.18394 -12.10320 -12.01937 -11.79591 -11.60054 -11.06811 -10.71482 -10.52360 -9.92859 -9.70038 -9.17335 -8.16279 -6.34021 0.41840 0.50640 1.45721 1.46492 1.56635 1.70976 1.74563 2.41237 2.87280 2.90817 3.13549 3.74160 3.96383 4.02725 4.08950 4.13394 4.32116 4.47308 4.50502 4.55045 4.56583 4.73055 4.75246 5.04210 5.11667 5.23889 5.38329 5.41445 5.50244 5.52761 5.59458 5.62360 5.76885 5.85140 5.92590 6.15249 6.41920 6.73598 6.91785 7.32370 7.51676 8.89222 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.037785 B = 0.003775 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.851452 B = 7415.286758 C = 7877.183922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.003 1.003 5 C -0.548 4.548 6 H 0.076 0.924 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.972 3.028 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.697 5.697 14 C 0.497 3.503 15 O -0.576 6.576 16 C 0.051 3.949 17 O -0.322 6.322 18 C 0.102 3.898 19 C -0.218 4.218 20 C -0.083 4.083 21 C -0.162 4.162 22 C -0.082 4.082 23 C -0.176 4.176 24 H 0.023 0.977 25 H 0.046 0.954 26 H 0.042 0.958 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.265 0.735 30 H 0.408 0.592 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.146 0.854 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.000 8.200 18.079 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.015 0.985 5 C -0.586 4.586 6 H 0.094 0.906 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.797 3.203 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.348 5.348 14 C 0.283 3.717 15 O -0.456 6.456 16 C -0.027 4.027 17 O -0.236 6.236 18 C 0.057 3.943 19 C -0.236 4.236 20 C -0.100 4.100 21 C -0.180 4.180 22 C -0.100 4.100 23 C -0.195 4.195 24 H 0.042 0.958 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.244 0.756 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.163 0.837 34 H 0.171 0.829 35 H 0.169 0.831 36 H 0.170 0.830 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.610 8.043 17.040 20.322 hybrid contribution 1.177 -0.250 -0.463 1.289 sum -6.433 7.793 16.578 19.415 Atomic orbital electron populations 1.21691 0.97220 0.99179 1.00114 1.21799 0.93480 0.99155 1.01582 1.18407 0.93821 0.89143 0.81068 0.98493 1.21578 0.91174 1.39026 1.06829 0.90620 1.25795 1.03398 0.94382 0.95004 1.70054 1.37139 1.38285 1.09922 0.85343 0.78981 0.78927 0.77072 1.19630 1.21493 1.18759 1.46087 1.14850 1.55880 1.18014 1.20661 0.82398 0.79184 0.89497 1.90698 1.52386 1.60301 1.42210 1.22570 0.83728 1.00377 0.96062 1.86134 1.30825 1.69827 1.36796 1.19459 0.94223 0.93950 0.86619 1.21571 1.01976 1.06471 0.93628 1.21358 0.95840 0.94815 0.98018 1.21477 0.95006 1.02455 0.99060 1.21287 1.00717 0.96265 0.91743 1.20703 0.93982 1.03501 1.01268 0.95816 0.93458 0.93930 0.90902 0.93600 0.92600 0.75618 0.86573 0.86326 0.83665 0.82942 0.83102 0.83033 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 8.51 71.98 0.61 -5.11 16 2 C -0.12 -5.94 5.45 30.59 0.17 -5.78 16 3 C 0.28 14.13 2.24 44.24 0.10 14.22 16 4 H 0.00 -0.17 7.58 -2.39 -0.02 -0.19 16 5 C -0.55 -28.35 8.73 25.60 0.22 -28.12 16 6 H 0.08 3.61 7.74 -2.91 -0.02 3.59 16 7 C 0.01 0.76 5.29 84.66 0.45 1.21 16 8 N -0.92 -52.14 11.29 21.45 0.24 -51.90 16 9 Si 0.97 41.40 29.54 68.60 2.03 43.43 16 10 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 11 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 13 N -0.70 -27.67 5.02 -446.11 -2.24 -29.91 16 14 C 0.50 19.64 6.48 87.66 0.57 20.21 16 15 O -0.58 -28.80 13.64 16.03 0.22 -28.58 16 16 C 0.05 1.41 5.22 71.24 0.37 1.78 16 17 O -0.32 -10.70 9.67 -73.44 -0.71 -11.41 16 18 C 0.10 2.76 6.69 22.50 0.15 2.91 16 19 C -0.22 -4.45 9.04 22.36 0.20 -4.25 16 20 C -0.08 -1.32 10.04 22.25 0.22 -1.10 16 21 C -0.16 -2.47 10.04 22.28 0.22 -2.25 16 22 C -0.08 -1.48 10.04 22.25 0.22 -1.26 16 23 C -0.18 -4.33 9.99 22.36 0.22 -4.11 16 24 H 0.02 1.17 7.85 -2.39 -0.02 1.15 16 25 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.04 1.89 5.64 -2.39 -0.01 1.87 16 27 H 0.07 4.01 5.95 -2.39 -0.01 3.99 16 28 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 30 H 0.41 12.94 8.54 -92.71 -0.79 12.15 16 31 H 0.12 2.52 7.68 -2.39 -0.02 2.50 16 32 H 0.12 2.50 7.65 -2.39 -0.02 2.48 16 33 H 0.15 2.33 6.30 -2.91 -0.02 2.31 16 34 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 35 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 36 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 37 H 0.12 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -70.59 309.98 3.56 -67.03 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.28 Total: 22.98 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 3.74 Total: -11.64 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -2.00 Total: -81.81 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -0.49 Total: -39.99 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -70.59 3.56 -67.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.383 kcal (2) G-P(sol) polarization free energy of solvation -70.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds