Wall clock time and date at job start Sun Mar 29 2020 23:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46799 * 2 1 4 4 H 1.09004 * 109.46648 * 305.00037 * 3 2 1 5 5 C 1.50694 * 109.47152 * 185.00244 * 3 2 1 6 6 H 1.07997 * 120.00022 * 239.99698 * 5 3 2 7 7 C 1.37883 * 120.00047 * 59.99894 * 5 3 2 8 8 N 1.31506 * 120.00062 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99861 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47058 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46869 * 119.99846 * 9 7 5 12 12 H 1.48495 * 109.47008 * 239.99968 * 9 7 5 13 13 N 1.46495 * 109.47276 * 65.00016 * 3 2 1 14 14 C 1.34782 * 120.00234 * 275.00103 * 13 3 2 15 15 O 1.21588 * 119.99531 * 0.02562 * 14 13 3 16 16 C 1.47529 * 120.00146 * 179.97438 * 14 13 3 17 17 C 1.39715 * 120.19338 * 0.02562 * 16 14 13 18 18 C 1.37780 * 119.90763 * 179.72282 * 17 16 14 19 19 C 1.38547 * 120.30566 * 0.02562 * 18 17 16 20 20 C 1.38053 * 120.38749 * 359.97250 * 19 18 17 21 21 C 1.38714 * 120.08308 * 0.02562 * 20 19 18 22 22 O 1.35653 * 120.14538 * 179.97438 * 21 20 19 23 23 C 1.42902 * 117.00625 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.47376 * 299.99463 * 1 2 3 25 25 H 1.08993 * 109.47654 * 60.00241 * 1 2 3 26 26 H 1.09007 * 109.47004 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47376 * 240.00537 * 2 1 3 28 28 H 1.08993 * 109.47654 * 119.99759 * 2 1 3 29 29 H 0.97006 * 120.00459 * 179.97438 * 8 7 5 30 30 H 0.96997 * 120.00400 * 94.99923 * 13 3 2 31 31 H 1.07998 * 120.04346 * 359.74588 * 17 16 14 32 32 H 1.08000 * 119.84993 * 179.97438 * 18 17 16 33 33 H 1.08001 * 119.81012 * 179.97438 * 19 18 17 34 34 H 1.08004 * 119.95913 * 179.97438 * 20 19 18 35 35 H 1.08994 * 109.47430 * 180.02562 * 23 22 21 36 36 H 1.08997 * 109.46847 * 300.00605 * 23 22 21 37 37 H 1.08997 * 109.46807 * 60.00106 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6052 1.9815 -0.8419 5 6 3.5418 1.4445 -0.1239 6 1 4.1471 1.8891 0.6522 7 6 4.1432 0.8786 -1.2281 8 7 3.4062 0.3377 -2.1734 9 14 6.0048 0.8816 -1.3819 10 1 6.5986 1.5466 -0.1944 11 1 6.4970 -0.5171 -1.4631 12 1 6.3988 1.6171 -2.6104 13 7 1.6524 2.0976 1.2517 14 6 0.4350 2.6644 1.3670 15 8 -0.3417 2.6318 0.4320 16 6 0.0445 3.3235 2.6278 17 6 0.9337 3.3629 3.7047 18 6 0.5650 3.9850 4.8775 19 6 -0.6845 4.5719 4.9948 20 6 -1.5728 4.5403 3.9384 21 6 -1.2183 3.9184 2.7503 22 8 -2.0904 3.8862 1.7117 23 6 -3.3588 4.5138 1.9097 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5137 0.8899 29 1 3.8292 -0.0602 -2.9504 30 1 2.2718 2.1233 1.9977 31 1 1.9087 2.9067 3.6179 32 1 1.2529 4.0146 5.7096 33 1 -0.9653 5.0571 5.9179 34 1 -2.5452 4.9997 4.0375 35 1 -3.9581 4.4156 1.0046 36 1 -3.8756 4.0343 2.7410 37 1 -3.2104 5.5699 2.1347 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178132.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:53:59 Heat of formation + Delta-G solvation = -50.488017 kcal Electronic energy + Delta-G solvation = -19980.654302 eV Core-core repulsion = 16916.384255 eV Total energy + Delta-G solvation = -3064.270047 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.27364 -38.43781 -37.14515 -34.89396 -32.44215 -31.50781 -30.27954 -30.03287 -27.35697 -26.74906 -23.82004 -22.77905 -21.90202 -20.35216 -19.21964 -18.32726 -17.13277 -16.12976 -15.83336 -15.67244 -15.08143 -14.69464 -14.54133 -14.29950 -14.09392 -13.41445 -12.95298 -12.64365 -12.60298 -12.15016 -11.81210 -11.56841 -11.37714 -11.21466 -11.07635 -11.07365 -10.90704 -10.78467 -10.24984 -10.09567 -9.55105 -8.97460 -8.95532 -8.84961 -8.44020 -8.14734 -7.67228 -6.07373 -4.16320 1.05928 1.45431 3.26647 3.34389 3.37015 3.38122 3.40767 4.14858 4.28366 4.42458 4.77031 4.84193 5.05766 5.14922 5.15699 5.24004 5.34657 5.50255 5.51944 5.66342 5.90956 6.25303 6.30163 6.46585 6.47828 6.55928 6.74348 6.75827 7.13820 7.28910 7.46230 7.49405 7.56338 7.69301 7.82923 7.98292 8.24943 8.77297 8.85960 9.27057 9.51622 10.98056 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026709 B = 0.005338 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.067928 B = 5244.257059 C = 5892.061291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.707 5.707 14 C 0.543 3.457 15 O -0.527 6.527 16 C -0.159 4.159 17 C -0.050 4.050 18 C -0.170 4.170 19 C -0.065 4.065 20 C -0.225 4.225 21 C 0.177 3.823 22 O -0.276 6.276 23 C 0.022 3.978 24 H 0.039 0.961 25 H 0.050 0.950 26 H 0.021 0.979 27 H 0.098 0.902 28 H 0.030 0.970 29 H 0.263 0.737 30 H 0.385 0.615 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.100 0.900 36 H 0.052 0.948 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.482 7.149 13.408 17.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.356 5.356 14 C 0.328 3.672 15 O -0.405 6.405 16 C -0.163 4.163 17 C -0.069 4.069 18 C -0.188 4.188 19 C -0.084 4.084 20 C -0.243 4.243 21 C 0.129 3.871 22 O -0.186 6.186 23 C -0.073 4.073 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.116 0.884 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.218 0.782 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.118 0.882 36 H 0.071 0.929 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.994 6.922 12.298 16.735 hybrid contribution 1.111 0.139 0.519 1.234 sum -7.883 7.060 12.817 16.622 Atomic orbital electron populations 1.21837 0.98306 0.97898 1.01383 1.21929 0.92661 0.99811 1.02153 1.18775 0.94110 0.89153 0.81022 0.93263 1.21276 0.90768 1.38758 1.06229 0.92094 1.24883 0.98517 0.94877 0.95414 1.69909 1.34967 1.37776 1.09317 0.86416 0.85010 0.77715 0.78084 1.19766 1.20922 1.20926 1.46415 1.14454 1.56229 1.18466 1.17887 0.83052 0.79577 0.86671 1.90782 1.51099 1.59120 1.39475 1.19834 0.93443 1.05930 0.97074 1.21282 0.98412 0.95590 0.91647 1.20954 0.97331 1.02203 0.98310 1.21015 0.93206 0.96496 0.97640 1.21193 1.01968 1.07188 0.93990 1.19109 0.89147 0.92199 0.86626 1.86444 1.24535 1.72401 1.35236 1.23113 0.83969 0.96937 1.03311 0.94175 0.93137 0.96011 0.88354 0.95115 0.92675 0.78203 0.84779 0.85587 0.85798 0.85251 0.88161 0.92944 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.51 37.16 0.32 -2.89 16 2 C -0.13 -3.17 5.45 -26.73 -0.15 -3.32 16 3 C 0.27 7.01 2.24 -69.08 -0.15 6.86 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.24 8.73 -34.44 -0.30 -14.54 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -25.02 11.29 55.43 0.63 -24.39 16 9 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 13 N -0.71 -15.39 4.97 -55.98 -0.28 -15.67 16 14 C 0.54 11.76 6.33 -12.47 -0.08 11.68 16 15 O -0.53 -13.16 12.29 -16.59 -0.20 -13.36 16 16 C -0.16 -2.79 5.89 -104.85 -0.62 -3.41 16 17 C -0.05 -0.71 9.54 -39.20 -0.37 -1.08 16 18 C -0.17 -1.94 10.02 -39.63 -0.40 -2.34 16 19 C -0.07 -0.70 10.03 -39.54 -0.40 -1.10 16 20 C -0.22 -2.75 9.03 -39.47 -0.36 -3.11 16 21 C 0.18 2.87 6.70 -38.70 -0.26 2.61 16 22 O -0.28 -4.70 8.57 -40.54 -0.35 -5.05 16 23 C 0.02 0.24 9.81 101.05 0.99 1.23 16 24 H 0.04 0.93 5.64 -51.93 -0.29 0.64 16 25 H 0.05 1.25 7.84 -51.93 -0.41 0.85 16 26 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 27 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.38 7.26 6.57 -40.82 -0.27 6.99 16 31 H 0.13 1.68 6.40 -52.49 -0.34 1.34 16 32 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.13 1.23 6.30 -52.48 -0.33 0.90 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 37 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 LS Contribution 303.76 15.07 4.58 4.58 Total: -1.00 -32.24 303.76 -7.30 -39.54 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -4.79 Total: 6.30 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -1.87 Total: -7.70 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.35 Total: -40.06 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.55 Total: -18.41 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.24 -7.30 -39.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178132.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.945 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds