Wall clock time and date at job start Sun Mar 29 2020 23:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09004 * 109.46651 * 54.42147 * 3 2 1 5 5 C 1.50699 * 109.47209 * 174.42377 * 3 2 1 6 6 H 1.07996 * 119.99865 * 114.19891 * 5 3 2 7 7 C 1.37877 * 119.99961 * 294.19749 * 5 3 2 8 8 N 1.31513 * 119.99936 * 159.34867 * 7 5 3 9 9 Si 1.86803 * 120.00145 * 339.34721 * 7 5 3 10 10 H 1.48508 * 109.46924 * 270.00013 * 9 7 5 11 11 H 1.48495 * 109.47244 * 29.99875 * 9 7 5 12 12 H 1.48491 * 109.47060 * 150.00169 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34773 * 119.99879 * 84.99781 * 13 3 2 15 15 O 1.21579 * 120.00504 * 0.02562 * 14 13 3 16 16 C 1.47608 * 119.99783 * 180.02562 * 14 13 3 17 17 C 1.39737 * 120.08599 * 359.72152 * 16 14 13 18 18 C 1.37702 * 119.90690 * 179.74461 * 17 16 14 19 19 C 1.38997 * 120.09248 * 0.50962 * 18 17 16 20 20 O 1.35709 * 119.91249 * 179.74201 * 19 18 17 21 21 C 1.42898 * 117.00430 * 0.02684 * 20 19 18 22 22 C 1.39000 * 120.17309 * 359.76732 * 19 18 17 23 23 C 1.37700 * 120.08864 * 359.97306 * 22 19 18 24 24 H 1.08994 * 109.47148 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 26 26 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 27 27 H 1.08999 * 109.47149 * 240.00193 * 2 1 3 28 28 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 29 29 H 0.97003 * 119.99675 * 354.92508 * 8 7 5 30 30 H 0.96997 * 119.99566 * 264.99631 * 13 3 2 31 31 H 1.07997 * 120.04595 * 359.97438 * 17 16 14 32 32 H 1.08005 * 119.95466 * 180.25647 * 18 17 16 33 33 H 1.08991 * 109.47480 * 179.97438 * 21 20 19 34 34 H 1.09004 * 109.46479 * 300.00023 * 21 20 19 35 35 H 1.08997 * 109.46998 * 59.99239 * 21 20 19 36 36 H 1.07998 * 119.95160 * 179.97438 * 22 19 18 37 37 H 1.08003 * 120.04489 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 6 3.5407 1.4447 0.1381 6 1 4.1572 1.8010 -0.6740 7 6 4.1267 0.9918 1.3011 8 7 5.3846 0.6081 1.2974 9 14 3.1338 0.9231 2.8819 10 1 3.2701 2.2113 3.6083 11 1 1.7040 0.6860 2.5586 12 1 3.6382 -0.1822 3.7355 13 7 1.6644 2.0933 -1.2576 14 6 0.4483 2.6598 -1.3861 15 8 -0.3369 2.6313 -0.4582 16 6 0.0695 3.3151 -2.6534 17 6 0.9726 3.3541 -3.7190 18 6 0.6135 3.9617 -4.9014 19 6 -0.6413 4.5450 -5.0322 20 8 -0.9895 5.1474 -6.1973 21 6 -0.0180 5.1437 -7.2452 22 6 -1.5404 4.5133 -3.9725 23 6 -1.1909 3.9030 -2.7887 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.8787 0.5738 0.4634 30 1 2.2909 2.1165 -1.9977 31 1 1.9495 2.9051 -3.6166 32 1 1.3094 3.9887 -5.7269 33 1 -0.4230 5.6557 -8.1180 34 1 0.8824 5.6571 -6.9077 35 1 0.2277 4.1151 -7.5093 36 1 -2.5143 4.9680 -4.0779 37 1 -1.8898 3.8792 -1.9657 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178148.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:01 Heat of formation + Delta-G solvation = -55.781141 kcal Electronic energy + Delta-G solvation = -19559.863498 eV Core-core repulsion = 16495.363923 eV Total energy + Delta-G solvation = -3064.499574 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.38939 -39.17689 -37.09200 -35.19431 -32.58611 -31.79179 -30.97157 -30.07404 -27.77819 -26.95540 -23.45069 -22.65923 -22.17156 -20.51592 -19.53769 -18.49825 -17.94839 -16.68105 -16.39796 -15.99090 -15.34379 -14.90525 -14.65794 -14.01911 -13.73832 -13.57153 -13.28073 -12.89836 -12.77461 -12.45945 -12.36217 -12.20531 -12.02647 -11.68509 -11.15981 -10.94703 -10.78141 -10.69501 -10.45041 -9.86823 -9.70044 -9.25061 -9.14286 -9.09431 -8.35477 -8.31719 -8.01542 -6.59215 -4.21678 0.99683 1.27262 3.02229 3.20171 3.42003 3.46227 3.61845 3.98923 4.09117 4.44478 4.59102 4.73061 4.85543 4.87091 5.13136 5.15367 5.19667 5.24456 5.37861 5.58373 5.88508 6.06145 6.09896 6.11797 6.19764 6.30352 6.42518 6.58335 6.73244 6.81769 6.98126 7.07509 7.16101 7.38411 7.42549 7.67709 8.23916 8.48978 8.70440 8.98893 9.45354 10.79461 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.032878 B = 0.004588 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.417480 B = 6100.822457 C = 6569.809162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.248 3.752 4 H 0.045 0.955 5 C -0.623 4.623 6 H 0.061 0.939 7 C 0.045 3.955 8 N -0.894 5.894 9 Si 1.034 2.966 10 H -0.283 1.283 11 H -0.267 1.267 12 H -0.284 1.284 13 N -0.697 5.697 14 C 0.546 3.454 15 O -0.549 6.549 16 C -0.161 4.161 17 C -0.047 4.047 18 C -0.217 4.217 19 C 0.141 3.859 20 O -0.317 6.317 21 C 0.026 3.974 22 C -0.162 4.162 23 C -0.025 4.025 24 H 0.030 0.970 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.270 0.730 30 H 0.390 0.610 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.099 0.901 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.134 0.866 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.240 6.406 -14.773 19.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C 0.144 3.856 4 H 0.063 0.937 5 C -0.660 4.660 6 H 0.079 0.921 7 C -0.162 4.162 8 N -0.526 5.526 9 Si 0.860 3.140 10 H -0.210 1.210 11 H -0.192 1.192 12 H -0.210 1.210 13 N -0.345 5.345 14 C 0.332 3.668 15 O -0.430 6.430 16 C -0.165 4.165 17 C -0.066 4.066 18 C -0.235 4.235 19 C 0.095 3.905 20 O -0.230 6.230 21 C -0.069 4.069 22 C -0.180 4.180 23 C -0.044 4.044 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.224 0.776 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.152 0.848 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.807 6.109 -12.528 17.636 hybrid contribution 0.684 0.289 -2.253 2.372 sum -10.123 6.398 -14.780 19.023 Atomic orbital electron populations 1.21897 0.97339 0.98849 1.02091 1.22199 0.93804 0.99650 1.01077 1.19135 0.95769 0.88575 0.82094 0.93722 1.22047 0.89720 1.49477 1.04786 0.92053 1.25640 0.96840 0.91934 1.01824 1.70837 1.10527 1.40203 1.31024 0.84187 0.76468 0.77421 0.75881 1.20960 1.19244 1.20981 1.46219 1.14381 1.55703 1.18154 1.18102 0.82780 0.79027 0.86871 1.90727 1.51023 1.60436 1.40768 1.20195 0.96043 1.04721 0.95492 1.21189 0.98722 0.95077 0.91592 1.21144 0.96721 1.05724 0.99950 1.19260 0.93195 0.92069 0.85952 1.86021 1.42712 1.73061 1.21194 1.23086 0.92539 1.02203 0.89097 1.20379 1.00247 1.05559 0.91851 1.21106 0.95052 0.91863 0.96344 0.95126 0.92888 0.93221 0.93212 0.92139 0.91984 0.77572 0.85130 0.85086 0.88235 0.92433 0.92463 0.84767 0.83938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.53 37.16 0.32 -2.66 16 2 C -0.13 -2.89 5.03 -26.73 -0.13 -3.02 16 3 C 0.25 5.94 1.78 -69.08 -0.12 5.81 16 4 H 0.05 1.17 5.99 -51.93 -0.31 0.86 16 5 C -0.62 -16.75 8.97 -34.44 -0.31 -17.06 16 6 H 0.06 1.72 7.96 -52.49 -0.42 1.30 16 7 C 0.04 1.26 5.25 -17.82 -0.09 1.16 16 8 N -0.89 -26.43 13.70 55.43 0.76 -25.67 16 9 Si 1.03 25.01 26.33 -169.99 -4.48 20.53 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.17 5.88 56.52 0.33 -5.84 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.70 -14.28 4.98 -55.95 -0.28 -14.56 16 14 C 0.55 10.75 6.36 -12.44 -0.08 10.67 16 15 O -0.55 -12.29 13.48 5.30 0.07 -12.22 16 16 C -0.16 -2.56 5.88 -104.95 -0.62 -3.18 16 17 C -0.05 -0.63 9.53 -39.22 -0.37 -1.00 16 18 C -0.22 -2.51 9.01 -39.50 -0.36 -2.87 16 19 C 0.14 1.70 6.70 -39.02 -0.26 1.44 16 20 O -0.32 -3.41 10.48 -18.83 -0.20 -3.60 16 21 C 0.03 0.18 9.81 101.05 0.99 1.17 16 22 C -0.16 -2.00 9.97 -39.50 -0.39 -2.39 16 23 C -0.02 -0.35 9.58 -39.22 -0.38 -0.73 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 1.14 7.88 -51.93 -0.41 0.73 16 26 H 0.05 1.02 5.63 -51.93 -0.29 0.73 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 1.40 5.64 -51.93 -0.29 1.11 16 29 H 0.27 7.88 8.73 -40.82 -0.36 7.53 16 30 H 0.39 7.12 6.55 -40.82 -0.27 6.85 16 31 H 0.13 1.59 6.39 -52.49 -0.34 1.26 16 32 H 0.13 1.17 6.28 -52.48 -0.33 0.84 16 33 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.35 7.65 -51.93 -0.40 -0.05 16 35 H 0.06 0.34 7.65 -51.93 -0.40 -0.05 16 36 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.14 1.99 7.64 -52.48 -0.40 1.59 16 LS Contribution 301.93 15.07 4.55 4.55 Total: -1.00 -31.55 301.93 -6.14 -37.69 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -4.76 Total: 5.94 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -1.81 Total: -12.67 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.48 Total: -40.22 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.13 Total: -15.82 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -4.48 Total: 20.53 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.55 -6.14 -37.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178148.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.087 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds