Wall clock time and date at job start Sun Mar 29 2020 23:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09004 * 109.46651 * 54.42147 * 3 2 1 5 5 C 1.50699 * 109.47209 * 174.42377 * 3 2 1 6 6 H 1.07996 * 119.99865 * 114.19891 * 5 3 2 7 7 C 1.37877 * 119.99961 * 294.19749 * 5 3 2 8 8 N 1.31513 * 119.99936 * 159.34867 * 7 5 3 9 9 Si 1.86803 * 120.00145 * 339.34721 * 7 5 3 10 10 H 1.48508 * 109.46924 * 270.00013 * 9 7 5 11 11 H 1.48495 * 109.47244 * 29.99875 * 9 7 5 12 12 H 1.48491 * 109.47060 * 150.00169 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34773 * 119.99879 * 84.99781 * 13 3 2 15 15 O 1.21579 * 120.00504 * 0.02562 * 14 13 3 16 16 C 1.47608 * 119.99783 * 180.02562 * 14 13 3 17 17 C 1.39737 * 120.08599 * 359.72152 * 16 14 13 18 18 C 1.37702 * 119.90690 * 179.74461 * 17 16 14 19 19 C 1.38997 * 120.09248 * 0.50962 * 18 17 16 20 20 O 1.35709 * 119.91249 * 179.74201 * 19 18 17 21 21 C 1.42898 * 117.00430 * 0.02684 * 20 19 18 22 22 C 1.39000 * 120.17309 * 359.76732 * 19 18 17 23 23 C 1.37700 * 120.08864 * 359.97306 * 22 19 18 24 24 H 1.08994 * 109.47148 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 26 26 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 27 27 H 1.08999 * 109.47149 * 240.00193 * 2 1 3 28 28 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 29 29 H 0.97003 * 119.99675 * 354.92508 * 8 7 5 30 30 H 0.96997 * 119.99566 * 264.99631 * 13 3 2 31 31 H 1.07997 * 120.04595 * 359.97438 * 17 16 14 32 32 H 1.08005 * 119.95466 * 180.25647 * 18 17 16 33 33 H 1.08991 * 109.47480 * 179.97438 * 21 20 19 34 34 H 1.09004 * 109.46479 * 300.00023 * 21 20 19 35 35 H 1.08997 * 109.46998 * 59.99239 * 21 20 19 36 36 H 1.07998 * 119.95160 * 179.97438 * 22 19 18 37 37 H 1.08003 * 120.04489 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 6 3.5407 1.4447 0.1381 6 1 4.1572 1.8010 -0.6740 7 6 4.1267 0.9918 1.3011 8 7 5.3846 0.6081 1.2974 9 14 3.1338 0.9231 2.8819 10 1 3.2701 2.2113 3.6083 11 1 1.7040 0.6860 2.5586 12 1 3.6382 -0.1822 3.7355 13 7 1.6644 2.0933 -1.2576 14 6 0.4483 2.6598 -1.3861 15 8 -0.3369 2.6313 -0.4582 16 6 0.0695 3.3151 -2.6534 17 6 0.9726 3.3541 -3.7190 18 6 0.6135 3.9617 -4.9014 19 6 -0.6413 4.5450 -5.0322 20 8 -0.9895 5.1474 -6.1973 21 6 -0.0180 5.1437 -7.2452 22 6 -1.5404 4.5133 -3.9725 23 6 -1.1909 3.9030 -2.7887 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.8787 0.5738 0.4634 30 1 2.2909 2.1165 -1.9977 31 1 1.9495 2.9051 -3.6166 32 1 1.3094 3.9887 -5.7269 33 1 -0.4230 5.6557 -8.1180 34 1 0.8824 5.6571 -6.9077 35 1 0.2277 4.1151 -7.5093 36 1 -2.5143 4.9680 -4.0779 37 1 -1.8898 3.8792 -1.9657 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178148.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:00 Heat of formation + Delta-G solvation = -77.022655 kcal Electronic energy + Delta-G solvation = -19560.784599 eV Core-core repulsion = 16495.363923 eV Total energy + Delta-G solvation = -3065.420676 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.46824 -40.50175 -38.18003 -36.96670 -34.52502 -33.43431 -32.07510 -31.20475 -29.15963 -28.13831 -24.78607 -24.16996 -23.47561 -22.01588 -21.22479 -19.99984 -19.25339 -18.21139 -17.57389 -16.85638 -16.70568 -16.28641 -15.95942 -15.50459 -15.08131 -14.74633 -14.59421 -14.50100 -14.31612 -14.09461 -13.66735 -13.57619 -13.37746 -12.79977 -12.66812 -12.48355 -12.31585 -12.02179 -11.85035 -11.70346 -11.53884 -11.16017 -10.83548 -10.47125 -10.13151 -9.84450 -9.27304 -8.80229 -6.42905 -0.10727 0.29069 1.48045 1.49179 1.71634 1.93156 2.26523 2.43101 2.47499 2.85858 2.98027 3.68937 3.83859 3.87855 4.17409 4.30626 4.32369 4.40031 4.41112 4.44911 4.54091 4.58129 4.75515 4.85282 4.93862 5.08057 5.08435 5.19282 5.22375 5.28901 5.38891 5.54781 5.58123 5.67787 5.70872 6.02211 6.32498 6.53470 6.84527 7.26975 7.42782 8.57637 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.032878 B = 0.004588 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.417480 B = 6100.822457 C = 6569.809162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.126 4.126 3 C 0.252 3.748 4 H 0.025 0.975 5 C -0.619 4.619 6 H 0.041 0.959 7 C 0.003 3.997 8 N -0.923 5.923 9 Si 1.067 2.933 10 H -0.276 1.276 11 H -0.253 1.253 12 H -0.278 1.278 13 N -0.700 5.700 14 C 0.546 3.454 15 O -0.582 6.582 16 C -0.189 4.189 17 C -0.046 4.046 18 C -0.212 4.212 19 C 0.149 3.851 20 O -0.325 6.325 21 C 0.014 3.986 22 C -0.163 4.163 23 C -0.029 4.029 24 H 0.057 0.943 25 H 0.039 0.961 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.261 0.739 30 H 0.400 0.600 31 H 0.139 0.861 32 H 0.162 0.838 33 H 0.123 0.877 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.154 0.846 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.485 6.956 -16.647 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.165 4.165 3 C 0.147 3.853 4 H 0.042 0.958 5 C -0.657 4.657 6 H 0.060 0.940 7 C -0.199 4.199 8 N -0.557 5.557 9 Si 0.889 3.111 10 H -0.202 1.202 11 H -0.177 1.177 12 H -0.204 1.204 13 N -0.348 5.348 14 C 0.335 3.665 15 O -0.464 6.464 16 C -0.192 4.192 17 C -0.065 4.065 18 C -0.230 4.230 19 C 0.102 3.898 20 O -0.238 6.238 21 C -0.080 4.080 22 C -0.182 4.182 23 C -0.048 4.048 24 H 0.076 0.924 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.236 0.764 31 H 0.156 0.844 32 H 0.179 0.821 33 H 0.141 0.859 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.172 0.828 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.052 6.674 -14.450 19.965 hybrid contribution 1.064 0.228 -1.890 2.180 sum -10.988 6.903 -16.339 20.865 Atomic orbital electron populations 1.21766 0.95635 1.00340 1.01330 1.22109 0.95250 0.98282 1.00902 1.18845 0.93573 0.89673 0.83187 0.95756 1.22215 0.91360 1.48157 1.03964 0.94045 1.26717 0.96991 0.91547 1.04657 1.70930 1.11566 1.42638 1.30557 0.83742 0.76171 0.77892 0.73260 1.20176 1.17736 1.20382 1.46042 1.15313 1.56121 1.17345 1.18621 0.81772 0.78166 0.87895 1.90696 1.51764 1.61635 1.42320 1.19932 0.97662 1.07067 0.94544 1.21293 0.98588 0.95060 0.91573 1.21414 0.97142 1.04494 0.99951 1.19405 0.92989 0.90999 0.86377 1.86031 1.44161 1.72376 1.21223 1.23444 0.92474 1.03481 0.88643 1.20553 1.01297 1.05076 0.91251 1.21108 0.94427 0.92140 0.97120 0.92422 0.94173 0.93464 0.92759 0.92938 0.93015 0.76436 0.84369 0.82075 0.85930 0.91472 0.91360 0.82792 0.84457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.35 8.53 71.98 0.61 -4.73 16 2 C -0.13 -5.62 5.03 30.59 0.15 -5.46 16 3 C 0.25 12.12 1.78 44.25 0.08 12.20 16 4 H 0.02 1.29 5.99 -2.38 -0.01 1.27 16 5 C -0.62 -33.79 8.97 25.60 0.23 -33.56 16 6 H 0.04 2.38 7.96 -2.91 -0.02 2.35 16 7 C 0.00 0.15 5.25 84.65 0.44 0.59 16 8 N -0.92 -55.46 13.70 21.45 0.29 -55.17 16 9 Si 1.07 50.59 26.33 68.60 1.81 52.40 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.25 -11.34 5.88 99.48 0.59 -10.75 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 N -0.70 -28.73 4.98 -449.20 -2.24 -30.97 16 14 C 0.55 21.56 6.36 86.72 0.55 22.11 16 15 O -0.58 -26.29 13.48 -3.96 -0.05 -26.35 16 16 C -0.19 -5.88 5.88 -20.08 -0.12 -6.00 16 17 C -0.05 -1.17 9.53 22.51 0.21 -0.95 16 18 C -0.21 -4.29 9.01 22.33 0.20 -4.08 16 19 C 0.15 3.16 6.70 22.63 0.15 3.31 16 20 O -0.32 -5.88 10.48 -90.29 -0.95 -6.83 16 21 C 0.01 0.13 9.81 113.37 1.11 1.24 16 22 C -0.16 -3.70 9.97 22.33 0.22 -3.48 16 23 C -0.03 -0.80 9.58 22.50 0.22 -0.58 16 24 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.04 1.69 7.88 -2.39 -0.02 1.67 16 26 H 0.05 1.90 5.63 -2.38 -0.01 1.89 16 27 H 0.05 2.32 8.14 -2.39 -0.02 2.31 16 28 H 0.05 2.39 5.64 -2.39 -0.01 2.38 16 29 H 0.26 15.63 8.73 -92.71 -0.81 14.82 16 30 H 0.40 14.59 6.55 -92.71 -0.61 13.99 16 31 H 0.14 3.18 6.39 -2.91 -0.02 3.16 16 32 H 0.16 2.23 6.28 -2.91 -0.02 2.21 16 33 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 0.56 7.65 -2.38 -0.02 0.54 16 35 H 0.07 0.55 7.65 -2.39 -0.02 0.53 16 36 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 37 H 0.14 3.84 7.64 -2.91 -0.02 3.82 16 Total: -1.00 -68.16 301.93 3.26 -64.90 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.32 Total: 21.40 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: 4.07 Total: -19.39 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -1.94 Total: -86.14 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -1.00 Total: -33.18 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 1.81 Total: 52.40 kcal Total: -68.16 3.26 -64.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178148.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.122 kcal (2) G-P(sol) polarization free energy of solvation -68.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds