Wall clock time and date at job start Sun Mar 29 2020 23:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47170 * 2 1 4 4 H 1.09004 * 109.47409 * 304.99819 * 3 2 1 5 5 C 1.50699 * 109.47441 * 184.99800 * 3 2 1 6 6 H 1.07992 * 120.00502 * 239.99974 * 5 3 2 7 7 C 1.37878 * 119.99759 * 60.00014 * 5 3 2 8 8 N 1.31513 * 120.00265 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99994 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46962 * 60.00104 * 9 7 5 11 11 H 1.48503 * 109.46804 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47070 * 299.99824 * 9 7 5 13 13 N 1.46506 * 109.47188 * 64.99756 * 3 2 1 14 14 C 1.34778 * 119.99997 * 275.00093 * 13 3 2 15 15 O 1.21577 * 120.00088 * 359.97438 * 14 13 3 16 16 C 1.47599 * 119.99607 * 180.02562 * 14 13 3 17 17 C 1.39740 * 120.08645 * 180.02562 * 16 14 13 18 18 C 1.37701 * 119.91009 * 180.27459 * 17 16 14 19 19 C 1.38999 * 120.09020 * 359.51091 * 18 17 16 20 20 O 1.35703 * 119.91187 * 180.23190 * 19 18 17 21 21 C 1.42896 * 117.00230 * 0.23099 * 20 19 18 22 22 C 1.38991 * 120.17275 * 0.46554 * 19 18 17 23 23 C 1.37708 * 120.09327 * 359.79014 * 22 19 18 24 24 H 1.09002 * 109.47715 * 300.00121 * 1 2 3 25 25 H 1.09000 * 109.47433 * 59.99740 * 1 2 3 26 26 H 1.08999 * 109.47149 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47076 * 240.00172 * 2 1 3 28 28 H 1.09000 * 109.47067 * 119.99860 * 2 1 3 29 29 H 0.97001 * 120.00647 * 180.02562 * 8 7 5 30 30 H 0.97003 * 119.99327 * 95.00357 * 13 3 2 31 31 H 1.08002 * 120.04019 * 359.97438 * 17 16 14 32 32 H 1.08004 * 119.95183 * 179.72111 * 18 17 16 33 33 H 1.08997 * 109.47503 * 300.00138 * 21 20 19 34 34 H 1.09000 * 109.47410 * 60.00048 * 21 20 19 35 35 H 1.09005 * 109.47690 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.95517 * 179.76923 * 22 19 18 37 37 H 1.08003 * 120.04474 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1432 0.8784 -1.2279 8 7 3.4062 0.3375 -2.1733 9 14 6.0049 0.8801 -1.3811 10 1 6.5965 0.1453 -0.2343 11 1 6.3977 0.2157 -2.6498 12 1 6.5003 2.2799 -1.3808 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3413 2.6326 0.4318 16 6 0.0448 3.3248 2.6279 17 6 -1.2171 3.9127 2.7495 18 6 -1.5752 4.5328 3.9257 19 6 -0.6874 4.5656 4.9947 20 8 -1.0459 5.1736 6.1537 21 6 -2.3509 5.7533 6.2055 22 6 0.5685 3.9815 4.8779 23 6 0.9363 3.3640 3.7032 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8292 -0.0610 -2.9499 30 1 2.2719 2.1232 1.9978 31 1 -1.9086 3.8850 1.9204 32 1 -2.5486 4.9914 4.0188 33 1 -2.4397 6.5182 5.4341 34 1 -3.0994 4.9791 6.0373 35 1 -2.5094 6.2047 7.1850 36 1 1.2569 4.0123 5.7094 37 1 1.9124 2.9108 3.6132 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178151.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:02 Heat of formation + Delta-G solvation = -75.249409 kcal Electronic energy + Delta-G solvation = -19472.498465 eV Core-core repulsion = 16407.154683 eV Total energy + Delta-G solvation = -3065.343782 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.40870 -40.42206 -38.11354 -36.85875 -34.36129 -33.02265 -32.13629 -31.11436 -28.89114 -28.19258 -25.29369 -24.14185 -23.47417 -21.95729 -21.08676 -19.55676 -18.91654 -17.75415 -17.39003 -16.78603 -16.68681 -16.26614 -16.15095 -15.76130 -15.04902 -14.66545 -14.53529 -14.41229 -14.05726 -13.65518 -13.49263 -13.32018 -13.14335 -12.90086 -12.79373 -12.64167 -12.17821 -12.06638 -11.98177 -11.79970 -11.57953 -11.05756 -10.75292 -10.50941 -10.09799 -9.69213 -9.21836 -8.14927 -6.32643 -0.06223 0.32819 1.46067 1.48078 1.55742 1.99893 2.29645 2.36951 2.65199 2.91084 3.14547 3.76343 3.85081 3.97289 4.22729 4.33588 4.42629 4.46585 4.49453 4.56747 4.57650 4.75231 4.77450 4.99584 5.05703 5.15319 5.24224 5.26052 5.40777 5.44794 5.56377 5.59626 5.63624 5.80405 5.94518 6.17184 6.35569 6.74702 6.98987 7.33913 7.56629 8.90398 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.032415 B = 0.004337 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.585096 B = 6453.866444 C = 7044.493938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.278 3.722 4 H -0.002 1.002 5 C -0.551 4.551 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.263 1.263 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.700 5.700 14 C 0.543 3.457 15 O -0.590 6.590 16 C -0.187 4.187 17 C -0.033 4.033 18 C -0.212 4.212 19 C 0.147 3.853 20 O -0.324 6.324 21 C 0.014 3.986 22 C -0.160 4.160 23 C -0.044 4.044 24 H 0.041 0.959 25 H 0.026 0.974 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.041 0.959 29 H 0.265 0.735 30 H 0.402 0.598 31 H 0.128 0.872 32 H 0.160 0.840 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.123 0.877 36 H 0.158 0.842 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.662 8.249 17.430 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.016 0.984 5 C -0.589 4.589 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.188 1.188 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.349 5.349 14 C 0.332 3.668 15 O -0.473 6.473 16 C -0.191 4.191 17 C -0.052 4.052 18 C -0.231 4.231 19 C 0.101 3.899 20 O -0.237 6.237 21 C -0.080 4.080 22 C -0.179 4.179 23 C -0.063 4.063 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.237 0.763 31 H 0.146 0.854 32 H 0.177 0.823 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.141 0.859 36 H 0.175 0.825 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.062 8.144 16.767 20.310 hybrid contribution 0.802 -0.120 -0.583 0.999 sum -7.260 8.024 16.184 19.469 Atomic orbital electron populations 1.21680 0.97083 0.99144 1.00204 1.21786 0.93694 0.99121 1.01374 1.18396 0.93746 0.89187 0.81181 0.98362 1.21554 0.91333 1.39137 1.06859 0.90968 1.25776 1.03393 0.94304 0.94945 1.70042 1.37184 1.38250 1.09840 0.85415 0.78990 0.78449 0.77585 1.18816 1.21209 1.19673 1.46196 1.15273 1.55777 1.17675 1.18675 0.81989 0.78351 0.87829 1.90701 1.52626 1.61960 1.41993 1.19962 0.97687 1.06833 0.94585 1.21102 0.94344 0.92320 0.97455 1.21383 1.02038 1.06574 0.93084 1.19406 0.93726 0.91420 0.85361 1.86027 1.36441 1.68832 1.32410 1.23435 0.80891 0.98273 1.05432 1.20581 0.95630 1.02336 0.99331 1.21315 0.98909 0.95127 0.90967 0.93985 0.95507 0.93487 0.90826 0.94010 0.92566 0.76251 0.85374 0.82269 0.91530 0.91491 0.85869 0.82451 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 8.51 71.98 0.61 -5.15 16 2 C -0.12 -6.08 5.45 30.59 0.17 -5.92 16 3 C 0.28 14.58 2.24 44.24 0.10 14.68 16 4 H 0.00 -0.09 7.58 -2.38 -0.02 -0.11 16 5 C -0.55 -29.41 8.73 25.60 0.22 -29.19 16 6 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 7 C 0.02 0.87 5.29 84.66 0.45 1.31 16 8 N -0.92 -52.70 11.29 21.45 0.24 -52.46 16 9 Si 0.97 42.15 29.54 68.60 2.03 44.17 16 10 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 11 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 13 N -0.70 -30.09 4.97 -449.21 -2.23 -32.32 16 14 C 0.54 22.94 6.33 86.71 0.55 23.49 16 15 O -0.59 -29.35 13.47 -3.96 -0.05 -29.40 16 16 C -0.19 -6.13 5.87 -20.08 -0.12 -6.25 16 17 C -0.03 -0.96 9.58 22.51 0.22 -0.74 16 18 C -0.21 -4.68 9.01 22.33 0.20 -4.48 16 19 C 0.15 3.21 6.70 22.63 0.15 3.36 16 20 O -0.32 -5.98 10.48 -90.23 -0.95 -6.92 16 21 C 0.01 0.14 9.81 113.37 1.11 1.25 16 22 C -0.16 -3.55 9.97 22.33 0.22 -3.33 16 23 C -0.04 -1.16 9.53 22.51 0.21 -0.94 16 24 H 0.04 1.91 5.65 -2.39 -0.01 1.89 16 25 H 0.03 1.33 7.84 -2.39 -0.02 1.31 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.07 4.11 5.95 -2.39 -0.01 4.10 16 28 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.40 14.57 6.56 -92.71 -0.61 13.96 16 31 H 0.13 3.88 7.64 -2.91 -0.02 3.85 16 32 H 0.16 2.48 6.28 -2.91 -0.02 2.46 16 33 H 0.07 0.58 7.64 -2.39 -0.02 0.57 16 34 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16 35 H 0.12 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 37 H 0.15 3.35 6.40 -2.91 -0.02 3.33 16 Total: -1.00 -68.64 305.84 3.61 -65.03 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.48 Total: 23.80 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 4.10 Total: -11.90 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -1.99 Total: -84.78 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -1.00 Total: -36.33 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -68.64 3.61 -65.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178151.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.217 kcal (2) G-P(sol) polarization free energy of solvation -68.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds