Wall clock time and date at job start Sun Mar 29 2020 23:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47159 * 2 1 4 4 H 1.09002 * 109.46883 * 55.00386 * 3 2 1 5 5 C 1.53001 * 109.46801 * 174.99923 * 3 2 1 6 6 O 1.42894 * 109.47310 * 55.00181 * 5 3 2 7 7 N 1.46501 * 109.47192 * 295.00155 * 3 2 1 8 8 C 1.34777 * 119.99780 * 84.99998 * 7 3 2 9 9 O 1.21576 * 120.00528 * 359.97438 * 8 7 3 10 10 C 1.47640 * 119.99277 * 179.97438 * 8 7 3 11 11 C 1.40009 * 119.90094 * 359.73073 * 10 8 7 12 12 C 1.36322 * 120.10987 * 179.71955 * 11 10 8 13 13 C 1.40893 * 119.88600 * 0.56990 * 12 11 10 14 14 C 1.41112 * 120.09703 * 179.67945 * 13 12 11 15 15 H 1.08004 * 119.99405 * 204.64934 * 14 13 12 16 16 C 1.40222 * 120.00147 * 24.65007 * 14 13 12 17 17 N 1.30645 * 120.00338 * 17.87450 * 16 14 13 18 18 Si 1.86805 * 119.99808 * 197.87501 * 16 14 13 19 19 H 1.48504 * 109.47081 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47265 * 119.99815 * 18 16 14 21 21 H 1.48493 * 109.47111 * 239.99979 * 18 16 14 22 22 C 1.40885 * 119.79504 * 359.70193 * 13 12 11 23 23 C 1.36311 * 119.89323 * 359.97438 * 22 13 12 24 24 H 1.08996 * 109.46993 * 59.99921 * 1 2 3 25 25 H 1.09003 * 109.46952 * 300.00065 * 1 2 3 26 26 H 1.08998 * 109.47101 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46907 * 120.00145 * 2 1 3 28 28 H 1.09003 * 109.46952 * 239.99935 * 2 1 3 29 29 H 1.09001 * 109.46756 * 175.00363 * 5 3 2 30 30 H 1.09000 * 109.47047 * 294.99623 * 5 3 2 31 31 H 0.96697 * 114.00412 * 179.97438 * 6 5 3 32 32 H 0.97004 * 119.99422 * 264.99990 * 7 3 2 33 33 H 1.08005 * 119.94486 * 359.97438 * 11 10 8 34 34 H 1.07996 * 120.05746 * 180.25367 * 12 11 10 35 35 H 0.97000 * 120.00100 * 180.02562 * 17 16 14 36 36 H 1.08001 * 120.05285 * 179.97438 * 22 13 12 37 37 H 1.08002 * 119.95021 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5649 1.4442 0.1257 6 8 4.1294 0.6403 -0.9120 7 7 1.6525 2.0975 -1.2518 8 6 0.4352 2.6644 -1.3669 9 8 -0.3415 2.6318 -0.4321 10 6 0.0449 3.3250 -2.6282 11 6 0.9431 3.3662 -3.7015 12 6 0.5850 3.9700 -4.8701 13 6 -0.6868 4.5637 -4.9926 14 6 -1.0595 5.1958 -6.1979 15 1 -1.8142 5.9684 -6.1915 16 6 -0.4500 4.8210 -7.4038 17 7 0.1866 3.6832 -7.4881 18 14 -0.5482 5.9486 -8.8899 19 1 -1.3200 7.1671 -8.5366 20 1 0.8229 6.3349 -9.3097 21 1 -1.2261 5.2400 -10.0050 22 6 -1.5850 4.5247 -3.9079 23 6 -1.2205 3.9128 -2.7457 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 3.9356 2.4654 0.0367 30 1 3.8499 1.0376 1.0961 31 1 5.0952 0.5961 -0.8941 32 1 2.2720 2.1231 -1.9978 33 1 1.9197 2.9152 -3.6048 34 1 1.2770 3.9977 -5.6988 35 1 0.6085 3.4242 -8.3222 36 1 -2.5608 4.9788 -3.9971 37 1 -1.9082 3.8828 -1.9134 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058241226.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:05 Heat of formation + Delta-G solvation = -84.532043 kcal Electronic energy + Delta-G solvation = -19536.925278 eV Core-core repulsion = 16471.178971 eV Total energy + Delta-G solvation = -3065.746307 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.45401 -37.60317 -36.78340 -34.60199 -33.84099 -31.99061 -30.02587 -29.41617 -28.45173 -25.79871 -23.33623 -22.17096 -20.99644 -20.30113 -19.60802 -17.54987 -17.48682 -16.71495 -15.84101 -15.36810 -15.00393 -14.33986 -14.05689 -13.93023 -13.76489 -13.16205 -12.91340 -12.61394 -12.32877 -12.15948 -12.03204 -11.82346 -11.35608 -11.24975 -11.14737 -10.94984 -10.78861 -10.64119 -10.48973 -10.11075 -10.00383 -9.53654 -9.32255 -8.87647 -8.44153 -7.68832 -7.51125 -7.01198 -4.57734 2.26916 2.92086 2.96304 3.01925 3.06616 3.75740 3.82382 3.91156 4.21360 4.60255 4.85319 5.07337 5.26735 5.44713 5.54624 5.61371 5.73356 5.89312 6.10154 6.18045 6.18596 6.25402 6.34869 6.54629 6.79030 6.81216 6.85419 7.02292 7.13169 7.16754 7.46623 7.49538 7.69564 7.83414 7.89123 8.09984 8.34130 8.42942 8.65851 8.78281 9.15620 9.90900 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029965 B = 0.004491 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.206121 B = 6233.234257 C = 6790.426573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.149 3.851 4 H 0.093 0.907 5 C 0.068 3.932 6 O -0.567 6.567 7 N -0.732 5.732 8 C 0.572 3.428 9 O -0.572 6.572 10 C -0.284 4.284 11 C -0.062 4.062 12 C -0.179 4.179 13 C 0.128 3.872 14 C -0.444 4.444 15 H 0.085 0.915 16 C 0.075 3.925 17 N -0.772 5.772 18 Si 0.912 3.088 19 H -0.257 1.257 20 H -0.269 1.269 21 H -0.272 1.272 22 C -0.239 4.239 23 C -0.022 4.022 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.039 0.961 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.377 0.623 32 H 0.401 0.599 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.286 0.714 36 H 0.097 0.903 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.840 -3.518 7.053 11.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.043 3.957 4 H 0.111 0.889 5 C -0.010 4.010 6 O -0.372 6.372 7 N -0.385 5.385 8 C 0.367 3.633 9 O -0.454 6.454 10 C -0.288 4.288 11 C -0.081 4.081 12 C -0.198 4.198 13 C 0.125 3.875 14 C -0.472 4.472 15 H 0.103 0.897 16 C -0.147 4.147 17 N -0.395 5.395 18 Si 0.736 3.264 19 H -0.181 1.181 20 H -0.194 1.194 21 H -0.197 1.197 22 C -0.259 4.259 23 C -0.042 4.042 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.224 0.776 32 H 0.236 0.764 33 H 0.107 0.893 34 H 0.137 0.863 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.788 -3.780 7.399 10.729 hybrid contribution 0.970 0.405 -0.946 1.414 sum 7.759 -3.375 6.453 10.641 Atomic orbital electron populations 1.21820 0.94953 0.99972 1.03518 1.21822 0.96818 0.95969 1.01868 1.20973 0.91417 0.94075 0.89212 0.88865 1.22519 0.93786 0.94319 0.90424 1.86536 1.25162 1.72221 1.53264 1.45902 1.17765 1.58996 1.15844 1.18529 0.80235 0.76534 0.88050 1.90628 1.51654 1.61820 1.41340 1.18936 0.98731 1.16667 0.94499 1.20500 0.96462 0.97746 0.93437 1.20975 0.97314 1.04761 0.96750 1.17791 0.90296 0.87509 0.91907 1.19871 1.18614 1.17515 0.91159 0.89719 1.26093 0.92801 0.94605 1.01157 1.69756 1.23824 1.17795 1.28174 0.86185 0.79309 0.81028 0.79895 1.18069 1.19402 1.19684 1.20711 0.99529 1.10120 0.95541 1.20359 0.93933 0.93728 0.96152 0.91693 0.92553 0.94207 0.92279 0.91299 0.93045 0.92649 0.77630 0.76377 0.89301 0.86253 0.90308 0.88452 0.88134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.51 37.16 0.32 -2.06 16 2 C -0.13 -1.80 5.33 -26.73 -0.14 -1.94 16 3 C 0.15 2.14 2.66 -67.93 -0.18 1.96 16 4 H 0.09 1.42 7.58 -51.93 -0.39 1.02 16 5 C 0.07 0.72 6.79 37.16 0.25 0.97 16 6 O -0.57 -6.08 12.61 -35.23 -0.44 -6.52 16 7 N -0.73 -12.64 4.96 -54.81 -0.27 -12.91 16 8 C 0.57 12.11 6.33 -12.42 -0.08 12.03 16 9 O -0.57 -13.10 13.45 5.30 0.07 -13.03 16 10 C -0.28 -6.56 5.89 -104.73 -0.62 -7.18 16 11 C -0.06 -1.41 9.47 -39.61 -0.38 -1.79 16 12 C -0.18 -4.45 8.64 -39.27 -0.34 -4.79 16 13 C 0.13 3.31 5.58 -106.80 -0.60 2.71 16 14 C -0.44 -11.16 9.04 -37.75 -0.34 -11.51 16 15 H 0.08 2.04 7.91 -52.48 -0.42 1.62 16 16 C 0.07 1.75 5.14 -17.31 -0.09 1.67 16 17 N -0.77 -18.74 10.95 55.56 0.61 -18.14 16 18 Si 0.91 17.40 29.60 -169.99 -5.03 12.37 16 19 H -0.26 -4.88 7.11 56.52 0.40 -4.47 16 20 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 21 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 22 C -0.24 -5.87 9.73 -39.27 -0.38 -6.25 16 23 C -0.02 -0.54 9.52 -39.61 -0.38 -0.91 16 24 H 0.06 1.27 5.64 -51.93 -0.29 0.98 16 25 H 0.06 0.94 7.84 -51.93 -0.41 0.53 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.04 7.73 -51.93 -0.40 0.64 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.38 2.23 9.12 45.56 0.42 2.65 16 32 H 0.40 6.62 6.38 -40.82 -0.26 6.36 16 33 H 0.09 1.75 6.37 -52.48 -0.33 1.42 16 34 H 0.12 3.01 6.16 -52.49 -0.32 2.69 16 35 H 0.29 6.21 8.29 -40.82 -0.34 5.88 16 36 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 37 H 0.10 2.31 7.63 -52.49 -0.40 1.91 16 LS Contribution 306.80 15.07 4.62 4.62 Total: -1.00 -28.98 306.80 -7.45 -36.43 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -4.06 Total: 14.26 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -2.95 Total: -17.09 kcal Atomic # 7 Polarization: -31.38 SS G_CDS: 0.34 Total: -31.04 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.37 Total: -19.55 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.37 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.98 -7.45 -36.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241226.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.101 kcal (2) G-P(sol) polarization free energy of solvation -28.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds