Wall clock time and date at job start Sun Mar 29 2020 23:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46692 * 2 1 4 4 H 1.09000 * 109.47326 * 304.99634 * 3 2 1 5 5 C 1.53005 * 109.47033 * 185.00078 * 3 2 1 6 6 O 1.42899 * 109.46830 * 305.00222 * 5 3 2 7 7 N 1.46493 * 109.47430 * 64.99967 * 3 2 1 8 8 C 1.34778 * 120.00295 * 204.99845 * 7 3 2 9 9 O 1.21588 * 119.99661 * 359.97438 * 8 7 3 10 10 C 1.47638 * 120.00265 * 180.02562 * 8 7 3 11 11 C 1.40012 * 119.89290 * 359.72118 * 10 8 7 12 12 C 1.36321 * 120.10276 * 179.76330 * 11 10 8 13 13 C 1.40887 * 119.89420 * 0.51440 * 12 11 10 14 14 C 1.41108 * 120.10556 * 179.71979 * 13 12 11 15 15 H 1.07997 * 120.00314 * 155.08116 * 14 13 12 16 16 C 1.40233 * 119.99758 * 335.08632 * 14 13 12 17 17 N 1.30641 * 119.99713 * 342.20303 * 16 14 13 18 18 Si 1.86798 * 119.99734 * 162.20513 * 16 14 13 19 19 H 1.48503 * 109.46878 * 94.66078 * 18 16 14 20 20 H 1.48503 * 109.46908 * 214.65694 * 18 16 14 21 21 H 1.48490 * 109.47311 * 334.66162 * 18 16 14 22 22 C 1.40887 * 119.79335 * 359.74050 * 13 12 11 23 23 C 1.36319 * 119.89134 * 0.02562 * 22 13 12 24 24 H 1.09003 * 109.46983 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46707 * 60.00190 * 1 2 3 26 26 H 1.09000 * 109.47345 * 300.00331 * 1 2 3 27 27 H 1.08993 * 109.47067 * 119.99496 * 2 1 3 28 28 H 1.09002 * 109.47458 * 240.00438 * 2 1 3 29 29 H 1.09003 * 109.47057 * 64.99407 * 5 3 2 30 30 H 1.08991 * 109.47407 * 184.99574 * 5 3 2 31 31 H 0.96700 * 114.00215 * 180.02562 * 6 5 3 32 32 H 0.96998 * 119.99748 * 24.99675 * 7 3 2 33 33 H 1.07999 * 119.95220 * 0.02562 * 11 10 8 34 34 H 1.08003 * 120.05116 * 180.23530 * 12 11 10 35 35 H 0.97004 * 120.00047 * 180.02562 * 17 16 14 36 36 H 1.07999 * 120.05876 * 179.97438 * 22 13 12 37 37 H 1.08000 * 119.95236 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4445 -0.1257 6 8 4.1293 0.6405 0.9121 7 7 1.6524 2.0976 1.2517 8 6 1.5255 3.4385 1.2995 9 8 1.7332 4.1046 0.3038 10 6 1.1354 4.0987 2.5612 11 6 0.8922 3.3290 3.7052 12 6 0.5365 3.9345 4.8736 13 6 0.4032 5.3361 4.9260 14 6 0.0295 5.9669 6.1316 15 1 0.3036 6.9962 6.3101 16 6 -0.6977 5.2573 7.0981 17 7 -1.3252 4.1600 6.7681 18 14 -0.7692 5.8812 8.8574 19 1 -1.9926 6.7025 9.0420 20 1 -0.8026 4.7268 9.7910 21 1 0.4304 6.7101 9.1378 22 6 0.6438 6.1058 3.7708 23 6 1.0037 5.4918 2.6082 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.8499 1.0378 -1.0960 30 1 3.9354 2.4656 -0.0367 31 1 5.0951 0.5964 0.8942 32 1 1.4870 1.5662 2.0462 33 1 0.9906 2.2544 3.6631 34 1 0.3527 3.3403 5.7566 35 1 -1.8285 3.6693 7.4365 36 1 0.5425 7.1805 3.8060 37 1 1.1880 6.0809 1.7219 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058241227.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:07 Heat of formation + Delta-G solvation = -87.931842 kcal Electronic energy + Delta-G solvation = -19432.256412 eV Core-core repulsion = 16366.362679 eV Total energy + Delta-G solvation = -3065.893733 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.36497 -37.56633 -36.66454 -34.88767 -33.84565 -31.98448 -30.10934 -29.41518 -28.37620 -25.79603 -23.54259 -22.15572 -21.03059 -20.36030 -19.60444 -17.50635 -17.39117 -16.72575 -15.79290 -15.37877 -14.87851 -14.35311 -13.99149 -13.96133 -13.53415 -13.48275 -13.10454 -12.74649 -12.44816 -12.27539 -12.03152 -11.89780 -11.37014 -11.29033 -11.24797 -10.97381 -10.91920 -10.75987 -10.61537 -10.04031 -9.94745 -9.53776 -9.32666 -8.91515 -8.52759 -7.69195 -7.51618 -7.01748 -4.58164 2.26182 2.91654 2.95669 3.02042 3.06121 3.75245 3.83454 3.88828 4.37285 4.59785 4.80932 5.10328 5.20247 5.39189 5.54893 5.60287 5.68703 5.76172 5.94698 5.97085 6.05552 6.10557 6.29812 6.34043 6.37345 6.79124 6.84672 7.00099 7.11483 7.16135 7.46087 7.64121 7.68990 7.82626 7.88430 8.09401 8.31739 8.42219 8.65211 8.77725 9.12462 9.90465 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029102 B = 0.004375 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.913266 B = 6397.786575 C = 6705.211489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C 0.150 3.850 4 H 0.094 0.906 5 C 0.063 3.937 6 O -0.567 6.567 7 N -0.727 5.727 8 C 0.572 3.428 9 O -0.581 6.581 10 C -0.283 4.283 11 C -0.061 4.061 12 C -0.179 4.179 13 C 0.129 3.871 14 C -0.444 4.444 15 H 0.084 0.916 16 C 0.075 3.925 17 N -0.772 5.772 18 Si 0.912 3.088 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.257 1.257 22 C -0.239 4.239 23 C -0.023 4.023 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.374 0.626 32 H 0.399 0.601 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.286 0.714 36 H 0.097 0.903 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.550 -7.873 -5.779 10.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C 0.044 3.956 4 H 0.112 0.888 5 C -0.016 4.016 6 O -0.372 6.372 7 N -0.379 5.379 8 C 0.367 3.633 9 O -0.464 6.464 10 C -0.288 4.288 11 C -0.080 4.080 12 C -0.198 4.198 13 C 0.126 3.874 14 C -0.472 4.472 15 H 0.102 0.898 16 C -0.146 4.146 17 N -0.396 5.396 18 Si 0.736 3.264 19 H -0.193 1.193 20 H -0.197 1.197 21 H -0.181 1.181 22 C -0.259 4.259 23 C -0.042 4.042 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.220 0.780 32 H 0.235 0.765 33 H 0.107 0.893 34 H 0.137 0.863 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.884 -7.681 -6.242 10.633 hybrid contribution 0.374 -0.003 0.977 1.046 sum 4.258 -7.684 -5.265 10.242 Atomic orbital electron populations 1.21793 0.95463 1.01345 1.02517 1.21683 0.96113 0.95428 1.03009 1.20940 0.91793 0.93565 0.89266 0.88769 1.22694 0.94917 0.94506 0.89479 1.86481 1.24847 1.72127 1.53732 1.45865 1.72157 1.07363 1.12537 1.18604 0.75042 0.80941 0.88717 1.90614 1.53953 1.64461 1.37352 1.18913 1.22766 0.94020 0.93092 1.20484 0.97627 0.96676 0.93213 1.20970 1.06284 0.95268 0.97268 1.17782 0.85956 0.92070 0.91625 1.19839 1.28470 0.99358 0.99502 0.89751 1.26092 0.93019 0.94052 1.01459 1.69745 1.19908 1.13696 1.36218 0.86222 0.79993 0.79603 0.80611 1.19253 1.19743 1.18094 1.20714 1.13621 0.98364 0.93190 1.20360 0.94244 0.92876 0.96709 0.92818 0.92823 0.92115 0.90709 0.91203 0.93537 0.92994 0.78020 0.76545 0.89306 0.86262 0.90267 0.88433 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.80 37.16 0.36 -1.44 16 2 C -0.12 -1.46 5.19 -26.73 -0.14 -1.60 16 3 C 0.15 2.17 2.37 -67.93 -0.16 2.01 16 4 H 0.09 1.46 7.58 -51.93 -0.39 1.06 16 5 C 0.06 0.83 6.85 37.16 0.25 1.08 16 6 O -0.57 -7.09 12.83 -35.23 -0.45 -7.54 16 7 N -0.73 -12.60 4.43 -54.81 -0.24 -12.84 16 8 C 0.57 12.32 7.73 -12.42 -0.10 12.22 16 9 O -0.58 -13.77 15.99 5.29 0.08 -13.68 16 10 C -0.28 -6.60 5.89 -104.73 -0.62 -7.21 16 11 C -0.06 -1.38 9.47 -39.61 -0.38 -1.75 16 12 C -0.18 -4.44 8.63 -39.27 -0.34 -4.78 16 13 C 0.13 3.32 5.57 -106.80 -0.60 2.73 16 14 C -0.44 -11.16 9.04 -37.74 -0.34 -11.50 16 15 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 16 C 0.07 1.76 5.13 -17.31 -0.09 1.67 16 17 N -0.77 -18.68 10.97 55.56 0.61 -18.07 16 18 Si 0.91 17.37 29.60 -169.99 -5.03 12.34 16 19 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 20 H -0.27 -5.07 7.11 56.52 0.40 -4.66 16 21 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 22 C -0.24 -5.87 9.73 -39.27 -0.38 -6.26 16 23 C -0.02 -0.54 9.52 -39.61 -0.38 -0.92 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.80 7.75 -51.93 -0.40 0.40 16 27 H 0.07 0.91 7.73 -51.93 -0.40 0.51 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.37 3.04 9.12 45.56 0.42 3.45 16 32 H 0.40 6.57 6.60 -40.82 -0.27 6.30 16 33 H 0.09 1.75 6.37 -52.49 -0.33 1.41 16 34 H 0.12 3.00 6.17 -52.48 -0.32 2.68 16 35 H 0.29 6.21 8.29 -40.82 -0.34 5.87 16 36 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 37 H 0.10 2.31 7.63 -52.49 -0.40 1.91 16 LS Contribution 313.98 15.07 4.73 4.73 Total: -1.00 -29.15 313.98 -7.39 -36.54 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -4.20 Total: 14.26 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -2.89 Total: -15.75 kcal Atomic # 7 Polarization: -31.27 SS G_CDS: 0.37 Total: -30.91 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.37 Total: -21.22 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -5.03 Total: 12.34 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.15 -7.39 -36.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241227.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.392 kcal (2) G-P(sol) polarization free energy of solvation -29.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds