Wall clock time and date at job start Sun Mar 29 2020 23:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46863 * 2 1 4 4 C 1.53004 * 109.46989 * 240.00410 * 2 1 3 5 5 O 1.42902 * 109.47094 * 59.99810 * 4 2 1 6 6 N 1.46494 * 109.47547 * 120.00081 * 2 1 3 7 7 C 1.34780 * 119.99821 * 300.00192 * 6 2 1 8 8 O 1.21544 * 119.99932 * 359.97438 * 7 6 2 9 9 C 1.47887 * 119.99821 * 179.97438 * 7 6 2 10 10 C 1.39922 * 120.02762 * 359.97438 * 9 7 6 11 11 C 1.38324 * 120.35956 * 180.02562 * 10 9 7 12 12 C 1.37743 * 120.41166 * 359.97438 * 11 10 9 13 13 C 1.40753 * 120.04404 * 0.02562 * 12 11 10 14 14 C 1.41428 * 120.18094 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00377 * 24.37846 * 14 13 12 16 16 C 1.39938 * 120.00012 * 204.38668 * 14 13 12 17 17 N 1.30825 * 119.99869 * 17.84278 * 16 14 13 18 18 Si 1.86804 * 120.00158 * 197.84304 * 16 14 13 19 19 H 1.48505 * 109.46701 * 94.69079 * 18 16 14 20 20 H 1.48499 * 109.47242 * 214.69090 * 18 16 14 21 21 H 1.48500 * 109.47130 * 334.69434 * 18 16 14 22 22 C 1.38993 * 120.02489 * 179.97438 * 9 7 6 23 23 H 1.08991 * 109.47058 * 299.99380 * 1 2 3 24 24 H 1.09003 * 109.47259 * 60.00363 * 1 2 3 25 25 H 1.09004 * 109.46457 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47399 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47200 * 300.00245 * 3 2 1 28 28 H 1.09002 * 109.47048 * 60.00045 * 3 2 1 29 29 H 1.09003 * 109.46885 * 179.97438 * 4 2 1 30 30 H 1.08996 * 109.46812 * 299.99596 * 4 2 1 31 31 H 0.96710 * 113.99460 * 180.02562 * 5 4 2 32 32 H 0.97004 * 120.00039 * 120.00000 * 6 2 1 33 33 H 1.08009 * 119.81952 * 0.02562 * 10 9 7 34 34 H 1.08004 * 119.79125 * 180.02562 * 11 10 9 35 35 H 1.08004 * 119.98157 * 179.97438 * 12 11 10 36 36 H 0.97002 * 120.00058 * 179.97438 * 17 16 14 37 37 H 1.07998 * 120.19965 * 359.70686 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.5636 -0.0475 -2.4161 6 7 2.0185 -0.6906 1.1961 7 6 1.6929 -0.2301 2.4202 8 8 0.9944 0.7583 2.5318 9 6 2.1855 -0.9276 3.6277 10 6 2.9891 -2.0659 3.4999 11 6 3.4532 -2.7239 4.6246 12 6 3.1303 -2.2663 5.8831 13 6 2.3230 -1.1229 6.0316 14 6 1.9901 -0.6503 7.3223 15 1 2.6269 -0.8821 8.1632 16 6 0.8354 0.1176 7.5100 17 7 -0.1078 0.1129 6.6034 18 14 0.6408 1.1495 9.0549 19 1 1.0990 2.5361 8.7850 20 1 -0.7878 1.1702 9.4597 21 1 1.4566 0.5626 10.1482 22 6 1.8505 -0.4529 4.8904 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.1301 -0.7208 -1.2495 30 1 1.6767 -1.7488 -1.2493 31 1 1.8487 -0.4513 -3.2473 32 1 2.5762 -1.4793 1.1070 33 1 3.2485 -2.4327 2.5177 34 1 4.0733 -3.6014 4.5153 35 1 3.4961 -2.7857 6.7565 36 1 -0.9084 0.6449 6.7336 37 1 1.2343 0.4280 4.9937 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058241900.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:40 Heat of formation + Delta-G solvation = -74.949560 kcal Electronic energy + Delta-G solvation = -19749.709374 eV Core-core repulsion = 16684.378595 eV Total energy + Delta-G solvation = -3065.330779 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.75043 -37.73268 -36.82222 -34.82902 -33.76257 -31.56032 -29.61501 -29.32896 -26.99028 -26.39884 -25.31004 -22.88216 -21.00503 -19.96151 -19.07987 -17.79976 -17.63765 -16.27364 -15.22794 -15.12883 -14.93319 -14.73528 -14.13966 -13.99205 -13.74433 -13.15306 -12.79015 -12.67904 -12.64597 -12.45448 -11.83423 -11.68165 -11.49551 -11.18338 -11.10889 -10.95360 -10.70686 -10.65918 -10.49273 -10.18620 -9.94885 -9.69480 -9.22289 -8.84668 -8.65211 -7.63519 -7.52839 -6.80624 -4.42015 2.21277 2.81041 3.07843 3.11379 3.15337 3.41027 3.87400 3.92012 4.38331 4.63154 4.89065 4.90859 5.14894 5.40896 5.59004 5.64717 5.68261 6.04067 6.04424 6.08869 6.13842 6.18027 6.27243 6.59040 6.63327 6.71441 6.95844 6.99368 7.03066 7.21038 7.37818 7.41723 7.69696 7.76495 7.92284 8.10819 8.19467 8.50398 8.79898 8.83074 8.98395 10.14037 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.027778 B = 0.005054 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.732621 B = 5538.705388 C = 6286.302375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.176 3.824 3 C -0.157 4.157 4 C 0.077 3.923 5 O -0.562 6.562 6 N -0.731 5.731 7 C 0.570 3.430 8 O -0.538 6.538 9 C -0.128 4.128 10 C -0.220 4.220 11 C -0.098 4.098 12 C -0.213 4.213 13 C 0.099 3.901 14 C -0.460 4.460 15 H 0.081 0.919 16 C 0.074 3.926 17 N -0.782 5.782 18 Si 0.910 3.090 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.261 1.261 22 C -0.092 4.092 23 H 0.080 0.920 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.379 0.621 32 H 0.396 0.604 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.285 0.715 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.317 -1.851 -11.803 12.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.090 3.910 3 C -0.215 4.215 4 C -0.001 4.001 5 O -0.367 6.367 6 N -0.386 5.386 7 C 0.361 3.639 8 O -0.416 6.416 9 C -0.131 4.131 10 C -0.240 4.240 11 C -0.116 4.116 12 C -0.233 4.233 13 C 0.096 3.904 14 C -0.489 4.489 15 H 0.099 0.901 16 C -0.146 4.146 17 N -0.407 5.407 18 Si 0.734 3.266 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.185 1.185 22 C -0.112 4.112 23 H 0.099 0.901 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.226 0.774 32 H 0.231 0.769 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.276 -0.647 -11.333 11.578 hybrid contribution 0.429 -0.537 0.133 0.700 sum 2.705 -1.184 -11.201 11.583 Atomic orbital electron populations 1.22141 0.93902 1.01923 1.03585 1.20043 0.95007 0.92776 0.83198 1.22137 1.00318 0.95480 1.03574 1.22266 0.97380 0.94819 0.85664 1.86462 1.77441 1.57079 1.15680 1.45977 1.55166 1.32455 1.05023 1.18732 0.78888 0.83419 0.82860 1.90635 1.37844 1.26389 1.86713 1.19489 1.02933 0.98170 0.92515 1.20333 1.07070 1.00083 0.96477 1.20426 0.99642 0.98441 0.93075 1.21094 1.07797 0.98960 0.95423 1.17603 0.89955 0.89577 0.93245 1.19611 1.06653 1.28081 0.94564 0.90054 1.25964 0.94892 0.95420 0.98290 1.69793 1.05387 1.31533 1.33957 0.86262 0.78282 0.80572 0.81434 1.19188 1.20182 1.18525 1.21637 0.99980 1.00146 0.89449 0.90093 0.91654 0.93223 0.93256 0.91633 0.90160 0.93198 0.93173 0.77422 0.76879 0.89332 0.88950 0.88644 0.90432 0.84807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 8.26 37.16 0.31 -2.19 16 2 C 0.18 2.62 0.89 -131.82 -0.12 2.50 16 3 C -0.16 -2.44 8.26 37.16 0.31 -2.14 16 4 C 0.08 0.85 6.03 37.16 0.22 1.07 16 5 O -0.56 -5.78 12.31 -35.23 -0.43 -6.21 16 6 N -0.73 -12.16 5.06 -48.53 -0.25 -12.40 16 7 C 0.57 12.30 7.19 -12.31 -0.09 12.21 16 8 O -0.54 -13.05 12.54 5.33 0.07 -12.98 16 9 C -0.13 -3.00 5.87 -105.04 -0.62 -3.61 16 10 C -0.22 -4.58 9.55 -38.92 -0.37 -4.95 16 11 C -0.10 -2.07 10.01 -39.73 -0.40 -2.47 16 12 C -0.21 -5.04 9.78 -38.81 -0.38 -5.42 16 13 C 0.10 2.61 5.57 -106.87 -0.60 2.01 16 14 C -0.46 -12.08 9.05 -37.73 -0.34 -12.42 16 15 H 0.08 2.03 7.91 -52.49 -0.41 1.61 16 16 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 17 N -0.78 -20.72 10.96 55.55 0.61 -20.11 16 18 Si 0.91 18.79 29.60 -169.99 -5.03 13.76 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 22 C -0.09 -2.44 8.23 -38.44 -0.32 -2.76 16 23 H 0.08 1.54 6.16 -51.93 -0.32 1.22 16 24 H 0.06 0.95 7.68 -51.93 -0.40 0.55 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.94 7.68 -51.93 -0.40 0.54 16 28 H 0.08 1.49 6.16 -51.93 -0.32 1.17 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.38 1.98 9.12 45.56 0.42 2.40 16 32 H 0.40 5.63 6.49 -40.82 -0.26 5.37 16 33 H 0.09 1.51 6.38 -52.48 -0.33 1.18 16 34 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 35 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 36 H 0.28 6.92 8.30 -40.82 -0.34 6.59 16 37 H 0.13 3.84 5.75 -52.49 -0.30 3.54 16 LS Contribution 305.91 15.07 4.61 4.61 Total: -1.00 -30.14 305.91 -6.91 -37.05 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -4.01 Total: 12.68 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -2.48 Total: -16.40 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.36 Total: -32.51 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.37 Total: -19.19 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.14 -6.91 -37.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241900.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.895 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds