Wall clock time and date at job start Sun Mar 29 2020 23:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46504 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.46499 * 119.99661 * 269.99401 * 4 3 2 6 6 C 1.39015 * 120.00071 * 89.99837 * 4 3 2 7 7 C 1.39245 * 119.92236 * 359.72601 * 6 4 3 8 8 C 1.37109 * 120.07274 * 179.72245 * 7 6 4 9 9 C 1.39884 * 119.92200 * 0.56446 * 8 7 6 10 10 C 1.47330 * 120.07357 * 179.67825 * 9 8 7 11 11 O 1.21553 * 119.99681 * 180.02562 * 10 9 8 12 12 O 1.34779 * 120.00371 * 0.02864 * 10 9 8 13 13 C 1.34866 * 117.00382 * 179.97438 * 12 10 9 14 14 H 1.08009 * 119.99665 * 359.97438 * 13 12 10 15 15 C 1.38787 * 120.00034 * 180.02562 * 13 12 10 16 16 N 1.31420 * 120.00132 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99601 * 179.97438 * 15 13 12 18 18 H 1.48487 * 109.47369 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46970 * 120.00070 * 17 15 13 20 20 H 1.48504 * 109.47029 * 239.99799 * 17 15 13 21 21 C 1.39884 * 119.85141 * 359.70866 * 9 8 7 22 22 C 1.37110 * 119.91901 * 359.97438 * 21 9 8 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 26 26 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 27 27 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.09003 * 109.47033 * 90.00622 * 5 4 3 31 31 H 1.09000 * 109.47241 * 210.00440 * 5 4 3 32 32 H 1.09000 * 109.47127 * 330.00198 * 5 4 3 33 33 H 1.07993 * 119.96351 * 359.97438 * 7 6 4 34 34 H 1.08001 * 120.03273 * 180.25092 * 8 7 6 35 35 H 0.97008 * 120.00114 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.04167 * 179.97438 * 21 9 8 37 37 H 1.08003 * 119.95877 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.4424 1.2678 6 6 4.1996 1.4426 -1.2048 7 6 3.5013 1.4370 -2.4095 8 6 4.1832 1.4429 -3.5990 9 6 5.5820 1.4425 -3.6013 10 6 6.3181 1.4416 -4.8776 11 8 7.5337 1.4409 -4.8780 12 8 5.6438 1.4417 -6.0445 13 6 6.3779 1.4414 -7.1759 14 1 7.4565 1.4415 -7.1198 15 6 5.7473 1.4420 -8.4123 16 7 4.4349 1.4434 -8.4805 17 14 6.7642 1.4423 -9.9793 18 1 8.2080 1.4412 -9.6325 19 1 6.4460 0.2302 -10.7761 20 1 6.4466 2.6552 -10.7752 21 6 6.2804 1.4424 -2.3893 22 6 5.5921 1.4431 -1.2035 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 4.4198 0.4147 1.5823 31 1 5.1903 1.9563 1.1372 32 1 3.6492 1.9562 2.0277 33 1 2.4214 1.4322 -2.4069 34 1 3.6409 1.4426 -4.5329 35 1 3.9941 1.4442 -9.3447 36 1 7.3604 1.4417 -2.3875 37 1 6.1306 1.4426 -0.2673 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058390482.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:38 Heat of formation + Delta-G solvation = -72.741330 kcal Electronic energy + Delta-G solvation = -19131.958577 eV Core-core repulsion = 16066.723554 eV Total energy + Delta-G solvation = -3065.235023 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.26541 -40.32673 -37.79049 -36.98863 -34.42317 -34.24007 -32.10627 -31.14760 -28.38431 -27.72589 -26.13982 -23.77140 -23.11363 -22.34171 -21.16564 -19.85152 -19.09014 -18.11436 -17.00145 -16.72545 -16.49969 -16.16711 -15.93672 -15.63791 -15.29857 -14.83969 -14.63534 -14.46981 -13.89499 -13.70312 -13.59776 -13.24806 -13.08631 -13.03923 -12.76744 -12.61069 -12.40274 -12.19354 -12.19005 -12.02137 -11.73005 -11.50029 -11.07353 -10.80831 -10.68890 -10.01823 -8.54848 -8.30385 -6.31721 0.02099 0.50005 1.33624 1.37260 1.52929 1.87876 2.12168 2.14851 2.85077 2.86255 3.10567 3.79918 3.91709 4.05803 4.12440 4.26495 4.38179 4.42622 4.49364 4.61000 4.62962 4.71041 4.73735 4.79164 4.94921 4.98019 5.09522 5.12364 5.19581 5.22364 5.27303 5.41796 5.47530 5.65564 5.73590 5.83579 6.31117 6.44803 6.65903 6.90101 7.78866 8.66692 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029489 B = 0.004120 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.274119 B = 6795.199075 C = 7627.433854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.114 3.886 4 N -0.621 5.621 5 C 0.082 3.918 6 C 0.248 3.752 7 C -0.207 4.207 8 C -0.026 4.026 9 C -0.198 4.198 10 C 0.440 3.560 11 O -0.593 6.593 12 O -0.238 6.238 13 C -0.422 4.422 14 H 0.079 0.921 15 C -0.004 4.004 16 N -0.901 5.901 17 Si 1.020 2.980 18 H -0.266 1.266 19 H -0.257 1.257 20 H -0.257 1.257 21 C -0.018 4.018 22 C -0.204 4.204 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.148 0.852 34 H 0.115 0.885 35 H 0.280 0.720 36 H 0.126 0.874 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.376 -0.469 20.755 22.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C -0.008 4.008 4 N -0.328 5.328 5 C -0.060 4.060 6 C 0.142 3.858 7 C -0.229 4.229 8 C -0.045 4.045 9 C -0.201 4.201 10 C 0.291 3.709 11 O -0.493 6.493 12 O -0.147 6.147 13 C -0.498 4.498 14 H 0.097 0.903 15 C -0.204 4.204 16 N -0.538 5.538 17 Si 0.839 3.161 18 H -0.190 1.190 19 H -0.182 1.182 20 H -0.182 1.182 21 C -0.038 4.038 22 C -0.226 4.226 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.165 0.835 34 H 0.133 0.867 35 H 0.089 0.911 36 H 0.144 0.856 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.378 -0.459 20.813 22.440 hybrid contribution 0.622 -0.113 -1.140 1.304 sum -7.756 -0.572 19.672 21.154 Atomic orbital electron populations 1.21690 0.94135 1.02250 1.02524 1.21925 0.96906 0.97157 1.01960 1.21780 0.77934 0.97065 1.04052 1.46679 1.05840 1.77326 1.02962 1.21937 0.97853 1.02266 0.83948 1.18066 0.91283 0.89873 0.86579 1.20612 1.00631 1.11690 0.89969 1.21057 0.92396 0.92195 0.98883 1.19024 0.94218 1.16936 0.89940 1.21848 0.86299 0.76611 0.86154 1.90543 1.16584 1.53386 1.88780 1.83935 1.40089 1.76912 1.13726 1.21523 0.91520 1.54718 0.82027 0.90307 1.26578 0.97619 0.94633 1.01593 1.70073 1.09481 1.46731 1.27526 0.84546 0.77421 0.79405 0.74777 1.18989 1.18175 1.18151 1.20870 1.00089 0.92511 0.90286 1.20652 0.92183 1.11581 0.98188 0.92636 0.92502 0.91236 0.93562 0.91444 0.90711 0.88089 0.92477 0.90674 0.89048 0.83494 0.86686 0.91102 0.85564 0.82211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.02 16 2 C -0.14 -2.03 6.26 30.60 0.19 -1.84 16 3 C 0.11 1.62 5.18 86.38 0.45 2.07 16 4 N -0.62 -11.23 2.99 -722.17 -2.16 -13.38 16 5 C 0.08 0.96 10.22 127.77 1.31 2.26 16 6 C 0.25 6.49 6.55 38.49 0.25 6.75 16 7 C -0.21 -6.29 9.16 22.25 0.20 -6.09 16 8 C -0.03 -1.04 9.58 22.40 0.21 -0.83 16 9 C -0.20 -9.01 5.88 -20.09 -0.12 -9.13 16 10 C 0.44 25.43 7.82 70.21 0.55 25.98 16 11 O -0.59 -36.46 15.58 19.66 0.31 -36.15 16 12 O -0.24 -15.32 8.98 10.75 0.10 -15.22 16 13 C -0.42 -27.39 9.65 67.95 0.66 -26.73 16 14 H 0.08 5.21 6.86 -2.91 -0.02 5.19 16 15 C 0.00 -0.25 5.49 84.89 0.47 0.22 16 16 N -0.90 -55.07 13.67 21.63 0.30 -54.77 16 17 Si 1.02 45.28 29.55 68.60 2.03 47.31 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 20 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 21 C -0.02 -0.68 9.56 22.40 0.21 -0.46 16 22 C -0.20 -5.64 9.16 22.25 0.20 -5.44 16 23 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 1.17 6.18 -2.39 -0.01 1.15 16 29 H 0.10 0.93 7.89 -2.39 -0.02 0.91 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.86 6.17 -2.39 -0.01 0.84 16 32 H 0.09 0.65 7.89 -2.39 -0.02 0.63 16 33 H 0.15 3.69 6.12 -2.91 -0.02 3.67 16 34 H 0.12 5.11 7.60 -2.91 -0.02 5.09 16 35 H 0.28 15.34 8.31 -92.70 -0.77 14.57 16 36 H 0.13 4.69 7.64 -2.91 -0.02 4.67 16 37 H 0.16 3.22 6.11 -2.91 -0.02 3.20 16 Total: -1.00 -79.95 316.15 6.93 -73.01 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 1.07 Total: 13.47 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: 5.30 Total: -14.26 kcal Atomic # 7 Polarization: -66.29 SS G_CDS: -1.86 Total: -68.15 kcal Atomic # 8 Polarization: -51.77 SS G_CDS: 0.40 Total: -51.37 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -79.95 6.93 -73.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058390482.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.272 kcal (2) G-P(sol) polarization free energy of solvation -79.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds