Wall clock time and date at job start Mon Mar 30 2020 00:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47022 * 2 1 4 4 O 1.42894 * 109.47283 * 120.00058 * 2 1 3 5 5 C 1.42898 * 114.00147 * 89.99952 * 4 2 1 6 6 C 1.50707 * 109.47270 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99665 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00046 * 179.97438 * 6 5 4 9 9 C 1.39236 * 120.00301 * 184.29116 * 8 6 5 10 10 C 1.39477 * 119.83327 * 324.71945 * 9 8 6 11 11 C 1.36372 * 120.17116 * 180.29111 * 10 9 8 12 12 C 1.40875 * 119.82611 * 359.48235 * 11 10 9 13 13 C 1.41155 * 120.16253 * 180.24856 * 12 11 10 14 14 H 1.08005 * 119.99270 * 215.01400 * 13 12 11 15 15 C 1.39903 * 120.00289 * 35.01109 * 13 12 11 16 16 N 1.30876 * 119.99608 * 355.54971 * 15 13 12 17 17 Si 1.86801 * 120.00082 * 175.54235 * 15 13 12 18 18 H 1.48501 * 109.46802 * 60.00417 * 17 15 13 19 19 H 1.48491 * 109.46978 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47209 * 300.00600 * 17 15 13 21 21 C 1.40868 * 119.66939 * 0.51450 * 12 11 10 22 22 C 1.36366 * 119.83186 * 359.73560 * 21 12 11 23 23 H 1.08992 * 109.47498 * 299.99790 * 1 2 3 24 24 H 1.09004 * 109.46750 * 60.00095 * 1 2 3 25 25 H 1.09006 * 109.47264 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47419 * 240.00460 * 2 1 3 27 27 H 1.09001 * 109.47522 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47294 * 300.00137 * 3 2 1 29 29 H 1.09000 * 109.47291 * 60.00220 * 3 2 1 30 30 H 1.08996 * 109.47260 * 60.00578 * 5 4 2 31 31 H 1.08996 * 109.47439 * 300.00341 * 5 4 2 32 32 H 0.97011 * 120.00196 * 4.29846 * 8 6 5 33 33 H 1.08001 * 119.91318 * 0.02562 * 10 9 8 34 34 H 1.07998 * 120.08970 * 179.69805 * 11 10 9 35 35 H 0.97003 * 119.99620 * 179.97438 * 16 15 13 36 36 H 1.08004 * 120.08115 * 179.71107 * 21 12 11 37 37 H 1.08000 * 119.92100 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2001 -2.0781 0.9886 6 6 2.7003 -2.6834 2.2749 7 8 2.8733 -1.9812 3.2484 8 7 2.9544 -4.0052 2.3437 9 6 3.3305 -4.5798 3.5549 10 6 4.1285 -3.8617 4.4453 11 6 4.5059 -4.4200 5.6309 12 6 4.0786 -5.7215 5.9600 13 6 4.4607 -6.3042 7.1875 14 1 4.6563 -7.3649 7.2439 15 6 4.5859 -5.5080 8.3310 16 7 4.4342 -4.2109 8.2449 17 14 4.9694 -6.2962 9.9806 18 1 6.2682 -7.0113 9.8974 19 1 5.0492 -5.2439 11.0253 20 1 3.8952 -7.2600 10.3304 21 6 3.2728 -6.4404 5.0555 22 6 2.9077 -5.8708 3.8715 23 1 -0.3634 0.5137 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 2.9320 -2.2467 0.1987 31 1 1.2539 -2.5433 0.7124 32 1 2.8753 -4.5563 1.5492 33 1 4.4519 -2.8625 4.1934 34 1 5.1278 -3.8647 6.3173 35 1 4.5207 -3.6588 9.0379 36 1 2.9453 -7.4404 5.2989 37 1 2.2896 -6.4205 3.1771 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063665304.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:34 Heat of formation + Delta-G solvation = -65.558010 kcal Electronic energy + Delta-G solvation = -19007.375380 eV Core-core repulsion = 15942.451848 eV Total energy + Delta-G solvation = -3064.923531 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.73828 -38.26044 -37.02602 -34.39672 -32.96442 -32.77800 -29.60140 -29.26141 -27.68439 -27.22276 -24.61226 -21.56655 -21.42386 -20.98358 -19.58592 -17.31216 -17.20871 -16.93685 -16.02093 -15.76604 -15.15082 -14.70127 -14.32470 -13.94998 -13.58658 -13.07500 -12.96838 -12.74412 -12.52549 -12.35735 -12.13739 -11.95787 -11.73454 -11.54958 -11.43984 -11.11761 -10.94904 -10.85722 -10.47776 -9.90091 -9.86353 -9.73510 -9.39862 -8.96660 -8.70138 -7.50232 -6.87012 -6.56527 -4.30898 2.59293 3.02839 3.08159 3.11895 3.12761 3.14870 3.39611 4.00891 4.15938 4.69268 4.74463 4.82786 4.97075 5.02975 5.14702 5.21875 5.39767 5.52230 5.61718 5.65889 5.68772 6.00148 6.04208 6.14587 6.40680 6.80524 6.96714 7.05953 7.10424 7.23798 7.31849 7.66027 7.70669 7.99684 8.11541 8.21822 8.35935 8.69475 8.78918 8.95804 9.03831 10.34423 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.038869 B = 0.003643 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.194673 B = 7684.763361 C = 8152.258450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.078 3.922 3 C -0.149 4.149 4 O -0.355 6.355 5 C 0.047 3.953 6 C 0.496 3.504 7 O -0.505 6.505 8 N -0.653 5.653 9 C 0.005 3.995 10 C -0.094 4.094 11 C -0.144 4.144 12 C 0.101 3.899 13 C -0.464 4.464 14 H 0.075 0.925 15 C 0.069 3.931 16 N -0.807 5.807 17 Si 0.916 3.084 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.267 1.267 21 C -0.205 4.205 22 C -0.113 4.113 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.394 0.606 33 H 0.108 0.892 34 H 0.131 0.869 35 H 0.279 0.721 36 H 0.097 0.903 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.503 4.499 -15.132 16.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.020 3.980 3 C -0.207 4.207 4 O -0.273 6.273 5 C -0.033 4.033 6 C 0.282 3.718 7 O -0.379 6.379 8 N -0.298 5.298 9 C -0.087 4.087 10 C -0.113 4.113 11 C -0.164 4.164 12 C 0.098 3.902 13 C -0.495 4.495 14 H 0.093 0.907 15 C -0.147 4.147 16 N -0.434 5.434 17 Si 0.741 3.259 18 H -0.191 1.191 19 H -0.204 1.204 20 H -0.192 1.192 21 C -0.225 4.225 22 C -0.133 4.133 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.228 0.772 33 H 0.126 0.874 34 H 0.148 0.852 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.359 5.367 -14.102 15.706 hybrid contribution -0.184 -0.753 0.082 0.779 sum -4.543 4.615 -14.019 15.443 Atomic orbital electron populations 1.22317 0.95982 1.02410 1.02663 1.22152 0.93729 0.94064 0.88043 1.21848 1.01973 0.94339 1.02497 1.88098 1.86467 1.17930 1.34850 1.22230 1.00799 0.83943 0.96327 1.20189 0.79302 0.82764 0.89590 1.90742 1.49844 1.60151 1.37154 1.42852 1.67984 1.07825 1.11161 1.17263 1.07616 0.95047 0.88773 1.20661 0.97015 0.98683 0.94991 1.21307 1.02520 0.97380 0.95180 1.17726 0.88762 0.91999 0.91704 1.19447 1.41440 0.95637 0.92941 0.90676 1.25898 0.92808 0.94659 1.01297 1.69786 1.37405 1.04941 1.31234 0.86250 0.79742 0.79395 0.80529 1.19078 1.20425 1.19158 1.20685 1.04759 1.00671 0.96342 1.20063 1.01265 0.94485 0.97476 0.91518 0.91700 0.92493 0.92221 0.91868 0.91328 0.91549 0.90752 0.90737 0.77224 0.87447 0.85186 0.90993 0.88514 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 9.53 37.16 0.35 -1.24 16 2 C 0.08 0.80 3.34 -26.73 -0.09 0.71 16 3 C -0.15 -1.38 9.56 37.16 0.36 -1.03 16 4 O -0.36 -5.28 9.52 -55.14 -0.52 -5.80 16 5 C 0.05 0.61 6.23 36.01 0.22 0.84 16 6 C 0.50 9.15 7.74 -10.98 -0.08 9.06 16 7 O -0.51 -12.05 13.92 -14.35 -0.20 -12.25 16 8 N -0.65 -11.51 5.30 -9.74 -0.05 -11.56 16 9 C 0.00 0.11 6.31 -83.57 -0.53 -0.41 16 10 C -0.09 -2.39 8.61 -39.79 -0.34 -2.73 16 11 C -0.14 -3.94 8.61 -39.26 -0.34 -4.27 16 12 C 0.10 2.73 5.55 -106.80 -0.59 2.14 16 13 C -0.46 -12.52 9.02 -37.85 -0.34 -12.86 16 14 H 0.08 1.92 7.85 -52.48 -0.41 1.51 16 15 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 16 N -0.81 -21.89 10.61 55.55 0.59 -21.30 16 17 Si 0.92 19.35 29.56 -169.99 -5.03 14.32 16 18 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 19 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 21 C -0.20 -4.98 9.74 -39.26 -0.38 -5.37 16 22 C -0.11 -2.47 9.90 -39.79 -0.39 -2.87 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.50 7.87 -51.93 -0.41 0.09 16 26 H 0.06 0.49 7.79 -51.93 -0.40 0.09 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 31 H 0.07 0.77 7.87 -51.93 -0.41 0.36 16 32 H 0.39 5.13 8.82 -40.82 -0.36 4.77 16 33 H 0.11 2.79 6.22 -52.49 -0.33 2.46 16 34 H 0.13 3.72 6.15 -52.49 -0.32 3.40 16 35 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 36 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 37 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 315.57 15.07 4.76 4.76 Total: -1.00 -32.57 315.57 -7.87 -40.44 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.16 Total: 7.74 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -2.25 Total: -16.33 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.54 Total: -32.87 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.72 Total: -18.06 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.57 -7.87 -40.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063665304.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.120 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds