Wall clock time and date at job start Sun Mar 29 2020 23:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47303 * 2 1 4 4 H 1.09002 * 109.47234 * 55.00683 * 3 2 1 5 5 O 1.42901 * 109.47455 * 294.99823 * 3 2 1 6 6 C 1.42898 * 113.99777 * 149.99808 * 5 3 2 7 7 C 1.50704 * 109.46987 * 175.00114 * 3 2 1 8 8 O 1.21285 * 120.00074 * 114.99848 * 7 3 2 9 9 N 1.34775 * 119.99961 * 295.00154 * 7 3 2 10 10 C 1.39245 * 119.99671 * 185.10013 * 9 7 3 11 11 C 1.39479 * 119.82549 * 214.18160 * 10 9 7 12 12 C 1.36380 * 120.16102 * 179.71631 * 11 10 9 13 13 C 1.40866 * 119.82863 * 0.57492 * 12 11 10 14 14 C 1.41163 * 120.16572 * 179.67444 * 13 12 11 15 15 H 1.07997 * 119.99836 * 205.37000 * 14 13 12 16 16 C 1.39908 * 119.99629 * 25.37080 * 14 13 12 17 17 N 1.30872 * 119.99778 * 16.82127 * 16 14 13 18 18 Si 1.86794 * 119.99781 * 196.82364 * 16 14 13 19 19 H 1.48501 * 109.47220 * 89.99793 * 18 16 14 20 20 H 1.48501 * 109.47190 * 209.99635 * 18 16 14 21 21 H 1.48497 * 109.47275 * 329.99964 * 18 16 14 22 22 C 1.40869 * 119.67387 * 359.69758 * 13 12 11 23 23 C 1.36375 * 119.82845 * 0.02562 * 22 13 12 24 24 H 1.08999 * 109.46927 * 59.99571 * 1 2 3 25 25 H 1.08993 * 109.47493 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46464 * 300.00072 * 1 2 3 27 27 H 1.09003 * 109.46464 * 239.99928 * 2 1 3 28 28 H 1.08999 * 109.46927 * 120.00429 * 2 1 3 29 29 H 1.09000 * 109.47071 * 60.00605 * 6 5 3 30 30 H 1.09008 * 109.46784 * 180.02562 * 6 5 3 31 31 H 1.08995 * 109.47752 * 300.00264 * 6 5 3 32 32 H 0.96996 * 119.99908 * 4.81902 * 9 7 3 33 33 H 1.07997 * 119.92520 * 0.02562 * 11 10 9 34 34 H 1.08001 * 120.08413 * 180.25183 * 12 11 10 35 35 H 0.97002 * 119.99876 * 180.02562 * 17 16 14 36 36 H 1.08002 * 120.08708 * 179.97438 * 22 13 12 37 37 H 1.08002 * 119.91516 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6056 1.9814 0.8419 5 8 1.6621 2.0814 -1.2210 6 6 1.4561 3.4902 -1.1002 7 6 3.5420 1.4441 0.1238 8 8 4.2252 1.8608 -0.7876 9 7 4.1261 0.9825 1.2473 10 6 5.5059 1.0816 1.4058 11 6 6.1988 0.0843 2.0919 12 6 7.5510 0.1715 2.2461 13 6 8.2462 1.2785 1.7209 14 6 9.6449 1.3794 1.8824 15 1 10.1216 2.3484 1.8682 16 6 10.4136 0.2241 2.0610 17 7 9.9151 -0.9470 1.7563 18 14 12.1512 0.3532 2.7342 19 1 12.1163 0.2593 4.2158 20 1 12.9774 -0.7529 2.1874 21 1 12.7413 1.6560 2.3347 22 6 7.5386 2.2845 1.0342 23 6 6.1872 2.1807 0.8830 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.3771 3.9643 -0.7609 30 1 1.1717 3.9003 -2.0693 31 1 0.6621 3.6808 -0.3783 32 1 3.5848 0.5850 1.9471 33 1 5.6639 -0.7616 2.4976 34 1 8.0868 -0.6035 2.7740 35 1 10.4479 -1.7480 1.8804 36 1 8.0648 3.1363 0.6293 37 1 5.6433 2.9514 0.3571 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067824373.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:41 Heat of formation + Delta-G solvation = -69.137141 kcal Electronic energy + Delta-G solvation = -19402.852573 eV Core-core repulsion = 16337.773839 eV Total energy + Delta-G solvation = -3065.078734 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.98604 -37.99247 -36.76598 -34.48274 -33.73982 -32.77024 -29.60867 -29.15879 -27.77439 -26.19722 -24.60437 -22.31946 -21.43373 -20.77536 -19.61374 -17.49870 -17.26236 -16.96579 -16.03535 -15.36784 -15.11235 -14.62712 -14.20895 -14.07289 -13.90796 -13.55900 -13.06164 -12.72133 -12.52464 -12.16374 -11.96858 -11.85588 -11.59151 -11.41237 -11.21250 -11.13724 -11.00727 -10.84816 -10.73659 -10.39586 -9.88750 -9.58709 -9.28997 -8.99710 -8.77163 -7.55268 -6.98969 -6.74560 -4.30834 2.54473 2.98980 3.06566 3.09232 3.10737 3.30519 3.53117 3.89799 3.93040 4.61056 4.78822 4.79879 5.01507 5.12207 5.23496 5.40224 5.43712 5.62765 5.67956 5.69771 5.78528 5.95215 6.12172 6.18947 6.40359 6.77074 6.88340 7.03372 7.04177 7.18518 7.28399 7.58362 7.72259 7.89353 8.02573 8.26995 8.28986 8.58723 8.77148 8.87637 8.99536 10.17425 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.044258 B = 0.003983 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.504875 B = 7029.060299 C = 7447.619226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C 0.076 3.924 4 H 0.082 0.918 5 O -0.357 6.357 6 C 0.030 3.970 7 C 0.472 3.528 8 O -0.516 6.516 9 N -0.649 5.649 10 C -0.007 4.007 11 C -0.113 4.113 12 C -0.153 4.153 13 C 0.106 3.894 14 C -0.458 4.458 15 H 0.078 0.922 16 C 0.074 3.926 17 N -0.793 5.793 18 Si 0.910 3.090 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.262 1.262 22 C -0.215 4.215 23 C -0.076 4.076 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.039 0.961 32 H 0.393 0.607 33 H 0.090 0.910 34 H 0.122 0.878 35 H 0.281 0.719 36 H 0.095 0.905 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.414 1.478 1.393 14.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C 0.014 3.986 4 H 0.100 0.900 5 O -0.274 6.274 6 C -0.066 4.066 7 C 0.258 3.742 8 O -0.391 6.391 9 N -0.295 5.295 10 C -0.100 4.100 11 C -0.133 4.133 12 C -0.173 4.173 13 C 0.103 3.897 14 C -0.488 4.488 15 H 0.097 0.903 16 C -0.143 4.143 17 N -0.418 5.418 18 Si 0.734 3.266 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.186 1.186 22 C -0.235 4.235 23 C -0.096 4.096 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.058 0.942 32 H 0.227 0.773 33 H 0.109 0.891 34 H 0.139 0.861 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.907 1.455 0.508 13.992 hybrid contribution 0.618 -0.094 0.796 1.012 sum -13.289 1.362 1.304 13.422 Atomic orbital electron populations 1.21725 0.94653 1.01919 1.02234 1.21591 0.96960 0.93222 1.03762 1.22104 0.91482 0.96072 0.88909 0.90010 1.87960 1.88128 1.20709 1.30638 1.22829 0.99760 0.81648 1.02402 1.21279 0.90704 0.79722 0.82534 1.90709 1.64577 1.45591 1.38247 1.43059 1.07264 1.60574 1.18558 1.17162 0.81210 0.98738 1.12851 1.20226 0.94977 0.95947 1.02148 1.20901 0.91675 1.00980 1.03724 1.17664 0.93290 0.90828 0.87920 1.19579 0.92076 0.93853 1.43250 0.90339 1.25928 1.00791 0.94792 0.92835 1.69846 1.38476 0.99285 1.34197 0.86283 0.81340 0.79073 0.79859 1.19279 1.20316 1.18604 1.20650 0.93397 1.02491 1.07003 1.20209 0.94549 0.95579 0.99258 0.91843 0.92325 0.92846 0.90288 0.90126 0.93557 0.89440 0.94229 0.77326 0.89148 0.86071 0.90846 0.88706 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.81 37.16 0.36 -0.92 16 2 C -0.12 -1.29 5.61 -26.73 -0.15 -1.44 16 3 C 0.08 1.01 2.52 -27.89 -0.07 0.94 16 4 H 0.08 0.87 7.79 -51.93 -0.40 0.46 16 5 O -0.36 -5.21 9.42 -55.09 -0.52 -5.73 16 6 C 0.03 0.35 10.81 101.05 1.09 1.44 16 7 C 0.47 8.58 6.85 -10.98 -0.08 8.50 16 8 O -0.52 -11.88 14.23 -14.31 -0.20 -12.08 16 9 N -0.65 -11.55 5.23 -9.74 -0.05 -11.60 16 10 C -0.01 -0.17 6.27 -83.57 -0.52 -0.69 16 11 C -0.11 -2.59 9.90 -39.79 -0.39 -2.99 16 12 C -0.15 -3.95 8.63 -39.26 -0.34 -4.29 16 13 C 0.11 2.86 5.57 -106.80 -0.59 2.26 16 14 C -0.46 -12.23 9.04 -37.85 -0.34 -12.58 16 15 H 0.08 2.02 7.90 -52.49 -0.41 1.60 16 16 C 0.07 1.87 5.15 -17.34 -0.09 1.78 16 17 N -0.79 -20.53 10.94 55.55 0.61 -19.92 16 18 Si 0.91 18.64 29.59 -169.99 -5.03 13.61 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 20 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 22 C -0.22 -5.55 9.74 -39.26 -0.38 -5.93 16 23 C -0.08 -1.86 8.57 -39.79 -0.34 -2.20 16 24 H 0.06 0.59 7.82 -51.93 -0.41 0.19 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.08 0.76 7.64 -51.93 -0.40 0.37 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.87 8.14 -51.92 -0.42 0.44 16 31 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.39 5.37 8.36 -40.82 -0.34 5.02 16 33 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.12 3.19 6.18 -52.49 -0.32 2.87 16 35 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 36 H 0.09 2.32 8.06 -52.49 -0.42 1.90 16 37 H 0.10 2.38 6.47 -52.49 -0.34 2.04 16 LS Contribution 314.57 15.07 4.74 4.74 Total: -1.00 -31.54 314.57 -7.44 -38.98 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -5.14 Total: 8.13 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -1.84 Total: -16.12 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: 0.56 Total: -31.52 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.72 Total: -17.81 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.54 -7.44 -38.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067824373.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.158 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds