Wall clock time and date at job start Mon Mar 30 2020 00:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.53001 * 109.47279 * 65.00040 * 4 2 1 6 6 O 1.42900 * 109.47811 * 180.02562 * 5 4 2 7 7 C 1.35896 * 117.00128 * 179.97438 * 6 5 4 8 8 C 1.38726 * 120.05730 * 359.72975 * 7 6 5 9 9 C 1.38145 * 119.94311 * 179.74451 * 8 7 6 10 10 C 1.38271 * 120.05566 * 0.50576 * 9 8 7 11 11 C 1.38266 * 120.10974 * 359.76963 * 10 9 8 12 12 C 1.38148 * 120.05760 * 359.97438 * 11 10 9 13 13 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 14 14 O 1.21293 * 119.99770 * 120.00322 * 13 2 1 15 15 N 1.34774 * 120.00011 * 300.00244 * 13 2 1 16 16 C 1.37097 * 120.00113 * 179.97438 * 15 13 2 17 17 H 1.08000 * 119.99621 * 359.97438 * 16 15 13 18 18 C 1.38946 * 120.00026 * 180.02562 * 16 15 13 19 19 N 1.31418 * 119.99512 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00290 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47308 * 89.99890 * 20 18 16 22 22 H 1.48497 * 109.47110 * 210.00231 * 20 18 16 23 23 H 1.48499 * 109.46850 * 329.99751 * 20 18 16 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 28 28 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 29 29 H 1.09001 * 109.46924 * 300.00271 * 5 4 2 30 30 H 1.09000 * 109.47104 * 59.99686 * 5 4 2 31 31 H 1.08001 * 120.02821 * 359.97438 * 8 7 6 32 32 H 1.07996 * 119.97438 * 180.27824 * 9 8 7 33 33 H 1.07996 * 119.94379 * 179.75285 * 10 9 8 34 34 H 1.08002 * 119.97302 * 179.97438 * 11 10 9 35 35 H 1.07994 * 120.02712 * 179.97438 * 12 11 10 36 36 H 0.96998 * 120.00125 * 0.02562 * 15 13 2 37 37 H 0.97006 * 119.99355 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.6353 0.0689 -2.4953 6 8 2.1112 -0.6050 -3.6621 7 6 1.8339 -0.0311 -4.8623 8 6 1.1136 1.1533 -4.9162 9 6 0.8376 1.7375 -6.1372 10 6 1.2695 1.1372 -7.3056 11 6 1.9826 -0.0463 -7.2548 12 6 2.2658 -0.6317 -6.0359 13 6 2.0323 -0.7104 1.2306 14 8 2.7297 -1.6965 1.1193 15 7 1.7067 -0.2499 2.4546 16 6 2.1633 -0.8964 3.5741 17 1 2.7835 -1.7749 3.4750 18 6 1.8271 -0.4219 4.8360 19 7 2.2652 -1.0414 5.9090 20 14 0.7525 1.0964 5.0074 21 1 -0.6750 0.6900 5.0524 22 1 1.1033 1.8121 6.2603 23 1 0.9753 1.9940 3.8456 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 3.1263 -0.7994 -1.2055 28 1 1.6054 -1.7198 -1.2951 29 1 0.5490 0.1471 -2.5390 30 1 2.0699 1.0674 -2.4494 31 1 0.7722 1.6203 -4.0042 32 1 0.2808 2.6619 -6.1796 33 1 1.0492 1.5934 -8.2594 34 1 2.3185 -0.5135 -8.1687 35 1 2.8224 -1.5563 -5.9969 36 1 1.1487 0.5385 2.5436 37 1 2.0302 -0.7104 6.7900 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073060565.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:03 Heat of formation + Delta-G solvation = -61.252896 kcal Electronic energy + Delta-G solvation = -18824.810941 eV Core-core repulsion = 15760.074093 eV Total energy + Delta-G solvation = -3064.736848 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.23456 -38.82808 -37.54881 -34.72346 -33.91375 -31.71410 -31.22251 -30.26122 -28.56977 -25.50130 -24.60627 -22.82071 -22.23942 -20.89742 -19.18227 -18.60497 -17.91799 -16.45807 -16.22447 -15.99537 -15.51120 -14.97649 -14.65481 -14.52860 -13.85916 -13.64840 -13.35274 -13.25104 -12.95221 -12.74295 -12.31478 -12.17176 -11.99807 -11.80416 -11.39419 -11.27131 -11.10871 -10.99202 -10.71834 -10.57250 -10.43670 -9.98852 -9.60441 -9.21082 -8.51659 -8.34922 -8.20847 -6.33717 -3.85138 1.13396 1.26951 3.00117 3.04229 3.08028 3.13211 3.60369 3.70249 4.07627 4.51377 4.63237 4.70324 4.91260 4.93941 5.04961 5.10715 5.16501 5.18363 5.29434 5.36252 5.44943 5.47107 5.48298 5.79663 5.84225 5.96230 6.07907 6.12689 6.17746 6.21215 6.32198 6.43645 6.51539 6.62162 7.34280 7.54363 8.12310 8.56125 8.91984 9.40023 9.79413 10.79369 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.047406 B = 0.003287 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.501582 B = 8517.591974 C = 8984.883447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.102 4.102 3 H 0.085 0.915 4 C -0.094 4.094 5 C 0.058 3.942 6 O -0.312 6.312 7 C 0.136 3.864 8 C -0.212 4.212 9 C -0.081 4.081 10 C -0.166 4.166 11 C -0.082 4.082 12 C -0.156 4.156 13 C 0.455 3.545 14 O -0.575 6.575 15 N -0.586 5.586 16 C -0.307 4.307 17 H 0.120 0.880 18 C 0.042 3.958 19 N -0.880 5.880 20 Si 0.878 3.122 21 H -0.270 1.270 22 H -0.276 1.276 23 H -0.269 1.269 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.371 0.629 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.536 7.990 -22.137 24.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 H 0.103 0.897 4 C -0.132 4.132 5 C -0.016 4.016 6 O -0.225 6.225 7 C 0.090 3.910 8 C -0.231 4.231 9 C -0.099 4.099 10 C -0.184 4.184 11 C -0.100 4.100 12 C -0.175 4.175 13 C 0.241 3.759 14 O -0.459 6.459 15 N -0.225 5.225 16 C -0.435 4.435 17 H 0.137 0.863 18 C -0.161 4.161 19 N -0.520 5.520 20 Si 0.704 3.296 21 H -0.195 1.195 22 H -0.201 1.201 23 H -0.195 1.195 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.204 0.796 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.945 7.124 -21.886 23.542 hybrid contribution -0.980 1.492 0.488 1.851 sum -5.926 8.616 -21.398 23.817 Atomic orbital electron populations 1.21886 0.93994 1.02887 1.01759 1.21073 0.96723 1.00336 0.94239 0.89661 1.21230 1.03295 0.99447 0.89220 1.23028 0.98889 0.96244 0.83475 1.86104 1.74068 1.49988 1.12331 1.19116 0.94070 0.91863 0.85951 1.21325 1.04828 0.97508 0.99391 1.20954 0.97976 0.99067 0.91920 1.21039 1.01952 0.97181 0.98254 1.20964 0.96952 0.95189 0.96904 1.20503 1.04819 1.02143 0.90021 1.19620 0.85333 0.87157 0.83795 1.90568 1.41209 1.27890 1.86185 1.42215 1.47002 1.27348 1.05888 1.19460 1.30134 1.11813 0.82123 0.86253 1.25048 0.97857 0.98106 0.95122 1.69628 1.44454 1.39956 0.97946 0.86691 0.81301 0.82964 0.78597 1.19539 1.20103 1.19458 0.91727 0.92343 0.92194 0.89902 0.90159 0.91773 0.92071 0.85385 0.85942 0.86115 0.85515 0.85164 0.79605 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.84 37.16 0.33 -1.64 16 2 C -0.10 -1.62 2.72 -91.77 -0.25 -1.87 16 3 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 4 C -0.09 -1.44 4.40 -26.73 -0.12 -1.55 16 5 C 0.06 0.72 4.50 37.16 0.17 0.88 16 6 O -0.31 -4.30 10.14 -19.41 -0.20 -4.50 16 7 C 0.14 1.67 6.69 -39.22 -0.26 1.41 16 8 C -0.21 -2.25 9.04 -39.43 -0.36 -2.61 16 9 C -0.08 -0.74 10.04 -39.60 -0.40 -1.14 16 10 C -0.17 -1.43 10.04 -39.56 -0.40 -1.83 16 11 C -0.08 -0.74 10.04 -39.60 -0.40 -1.14 16 12 C -0.16 -1.71 9.99 -39.43 -0.39 -2.10 16 13 C 0.45 10.24 7.11 -10.98 -0.08 10.16 16 14 O -0.58 -15.45 15.50 5.55 0.09 -15.37 16 15 N -0.59 -13.90 4.98 -10.96 -0.05 -13.96 16 16 C -0.31 -8.66 10.16 -14.93 -0.15 -8.82 16 17 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 18 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 19 N -0.88 -25.67 13.96 55.50 0.77 -24.89 16 20 Si 0.88 19.23 27.74 -169.99 -4.71 14.52 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.60 6.56 -51.93 -0.34 0.26 16 26 H 0.06 0.79 7.56 -51.93 -0.39 0.39 16 27 H 0.08 1.40 7.95 -51.93 -0.41 0.99 16 28 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 29 H 0.06 0.68 6.07 -51.93 -0.32 0.37 16 30 H 0.06 0.67 7.68 -51.93 -0.40 0.27 16 31 H 0.13 1.19 6.30 -52.49 -0.33 0.86 16 32 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 35 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.37 7.72 5.18 -40.82 -0.21 7.51 16 37 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 311.77 15.07 4.70 4.70 Total: -1.00 -32.69 311.77 -6.73 -39.42 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -4.92 Total: 9.28 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -2.40 Total: -9.20 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.72 Total: -38.85 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.11 Total: -19.87 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.71 Total: 14.52 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.69 -6.73 -39.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073060565.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.832 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds